Carg15626 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15626
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 11229151 .. 11231892 (-)
RNA-Seq ExpressionCarg15626
SyntenyCarg15626
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGAACCGACGCCTGATTTCTTAGTTTTCATTTCTTTCGGCCTCGTCTCTCAGCCCTTTTTCACTCTTTCAACTTGGACGTCGGCCGTCGCATCTCCCTCTCCCGGCGTCCGCACCCGCCGCTTGGATCTCTGCAGTCACCGTGAGCTCGTAAGGAATTTCTTTACGGATTTTTAGAAGAATTTGATTAGGTTTTAGCTTTTATGCGTTTTACTTACTGATTGGTTCTTTGATTTGTTTTCCATGTTTTTCTATCTGGGTTTCTTGGATTATTTTTAGACTTGCCTTTAAGGTGTTTGTTAATTTGCTTGACTGAAAAGTGATTTGGGATCTCTGTGAATGAGTTTGATTGAAAGTCTAGTTTGTTTATGAGAGAAAAGCTCATTTTCTTAGCTTTGATAATGGGAAGTTTGTCATTTAAAGGATAAGTACATGCATTCTTTTTGTGTTCTAGGTAGAATTCTGTATGATTCTTAGTTGATAGAATGGAAACTTGAGATTCTGTTCGTGTGTATTGGAAGTTGAAACCATCATATTATACTGCACTACCATCCCTAGTAGGGTTGCTGTTAATTTTAGTTTGTCTAGATCTCAGTTCGTTGTCAGTTCGTTGGTTGGGAGGAGAACAAAGCATTTTTTATAAGGTGTGGAAACCTCTCCCTAGCAAATGCGTTTTAAAAACCATGAGAGGAAGCTTGAAAAGGAAAGCCCAAAGAGGACAATATCTACCGGCAGTGGGCTAGGCCTTTCCTATCGGGCTCAAGCCCACCGCTAGTAGATATTGATGTCAAAACGTGCTACTAGGGAGAGGTTTCCACACCCTTATAAGAAATGCTTCGTCGTCCTCTCCAACCAATGTGGGATCTCACAATCCACCCCCCTTGGGGGCTCAATGTCCTCGCTGACACACCGCCCAATGTTTGGCTTTGATACCATTTGCAACGTTGGAGAGGAGAACCTTGTGAATTGTGAGATCCCACATCAGTTGGAGAGGAAAACGAAGCATTCCTTAGAAAGGACGTAGAAACCTCTCCCTAACAGATGCGTTTTAAAACCTTAAGAGAAACCCCGAAAGGAAAAATCCAAAGAGGACAATATCTACTAATGGTGGGCTTGAGTTGGCTTTAATACCATTTGTAACGTTGGGCCCCCAAGAGGGATAAATTGTGAGATCCCATATCGGTTGGAGAGGAGAACAAAGCATTCCTTAGAAAGGGTGTGGAAACCTCTCCCTCATAGACGCGTTTTAAAACTTTAAGAGAAAGCCCGAAAGGAAAAGTCCAAAGAGGACAATATCTACTAACGGTCGGTGGGCTTGCCTCACATAGACTGAATCCTCTGAGAATACACTAAATTTCATCCCTGATCTTCTGTCACACAAACATGGTTTCATTGTTCATATTCTTCCTTTGCAGATGTTATGCTTAAAGGATCTTCAGGGTTTTTTACACAAGAATTTTTCTGAATTGGAGATATCATTTTCAGGTCTGAACTAAAATCTTAGTACACCTCCAAGTTTTCGTGTCGTAGCCAAATACTTTCGAATTCGTTTTTCGGTTTGTGAAAAAACCTTAGCTGATATCTTTGGTGGACAAAAAAATGACAGAAATTTTCAGTTACACAGCATGCAGACAATTGTCTCAGATGATCTTTGCAATTATCTTCTTTCATTGTTCCGAATACATCTTAGCCGTTGGAATTCATGGGAGACAAAATGTTACTCTAAAGTCCCTTTTGATAAGCAAAAACTACCTCTTAGCCATGATCTTATCCTTCATAGAGTACTTTCTTGAAGTTTTCTTGTGTCCCAGTCTTAAGGAATACTGGTGGGTTAGTCATATAGGCCTAGCCATGGTTGTCGTCGGAGAAATCGTACGTAAACTGGCGATCATAACCGCAGGTCGGTCTTTTACGCATCTGATTAAGGTCTATCATGAGGACCATCACAAGCTGGTCACTCATGGAGTTTATAGATTTGTTCGTCATCCTGGATACAACGGTTTTCTCGTGTGGGCGGTGGGAACTCAAATCATGCTCTGTAATCCCATATCGACCGTTGCATTTGCCATTGTTGTTTGGCACTTCTTTGCTGAACGAATTCCGTATGAAGAGTACTTCTTGAGACAGTTTTTTGGCCACGAGTACGAGGAGTATGCGAGACGGGTACCGTCTGGAGTGCCATTTGTGAAATGAAGGTCCAAGAATGCTTCATGAACATGTTTCATGGTTTCTGTTCATGTCTTGTGTAGTTTCTGATTGATGATTTGTGCGATTGGATCTTTGTGACAAGTTTGAGGTTCTTACTTGTAACTTTTTTTTGTTGAATATGTGTATGTGACATTTCATAACAAATGTACTAACAACTGTTATGCGTTGAGTTTGGTTCGGTTGGGTTGTCGGGTGGTTCAATACTTTAGATCGGAGAGAATGACGACAGAGAGTAACAAGTACATGATGGTGATGATCGTGAGCAGCTACGATAGCAACCAACACTTGAGAGAGAGAGAGAGATGGTTGTGCAGCTTGCGACAAATTGCATATAATGATCAGCAATGACAGTGATAACAAGTATTAGAGAGCGACGATGATGAAGTTCACAAAGGCGGAGAGACAAGAGGTGCATGTGAACTACAAACTCGGGGGTTATAAACCAATCTCAGTTAGCAAACGAGTAAGAGAAAGAGCATCGTTCCCTGCTGAACATCCTTTACTAAAATCTCGAAAAAAACGAAACCCATTAGT

mRNA sequence

CTCGAACCGACGCCTGATTTCTTAGTTTTCATTTCTTTCGGCCTCGTCTCTCAGCCCTTTTTCACTCTTTCAACTTGGACGTCGGCCGTCGCATCTCCCTCTCCCGGCGTCCGCACCCGCCGCTTGGATCTCTGCAGTCACCGTGAGCTCATGTTATGCTTAAAGGATCTTCAGGGTTTTTTACACAAGAATTTTTCTGAATTGGAGATATCATTTTCAGGTCTGAACTAAAATCTTAGTACACCTCCAAGTTTTCGTGTCGTAGCCAAATACTTTCGAATTCGTTTTTCGGTTTGTGAAAAAACCTTAGCTGATATCTTTGGTGGACAAAAAAATGACAGAAATTTTCAGTTACACAGCATGCAGACAATTGTCTCAGATGATCTTTGCAATTATCTTCTTTCATTGTTCCGAATACATCTTAGCCGTTGGAATTCATGGGAGACAAAATGTTACTCTAAAGTCCCTTTTGATAAGCAAAAACTACCTCTTAGCCATGATCTTATCCTTCATAGAGTACTTTCTTGAAGTTTTCTTGTGTCCCAGTCTTAAGGAATACTGGTGGGTTAGTCATATAGGCCTAGCCATGGTTGTCGTCGGAGAAATCGTACGTAAACTGGCGATCATAACCGCAGGTCGGTCTTTTACGCATCTGATTAAGGTCTATCATGAGGACCATCACAAGCTGGTCACTCATGGAGTTTATAGATTTGTTCGTCATCCTGGATACAACGGTTTTCTCGTGTGGGCGGTGGGAACTCAAATCATGCTCTGTAATCCCATATCGACCGTTGCATTTGCCATTGTTGTTTGGCACTTCTTTGCTGAACGAATTCCGTATGAAGAGTACTTCTTGAGACAGTTTTTTGGCCACGAGTACGAGGAGTATGCGAGACGGGTACCGTCTGGAGTGCCATTTGTGAAATGAAGGTCCAAGAATGCTTCATGAACATGTTTCATGGTTTCTGTTCATGTCTTGTGTAGTTTCTGATTGATGATTTGTGCGATTGGATCTTTGTGACAAGTTTGAGGTTCTTACTTGTAACTTTTTTTTGTTGAATATGTGTATGTGACATTTCATAACAAATGTACTAACAACTGTTATGCGTTGAGTTTGGTTCGGTTGGGTTGTCGGGTGGTTCAATACTTTAGATCGGAGAGAATGACGACAGAGAGTAACAAGTACATGATGGTGATGATCGTGAGCAGCTACGATAGCAACCAACACTTGAGAGAGAGAGAGAGATGGTTGTGCAGCTTGCGACAAATTGCATATAATGATCAGCAATGACAGTGATAACAAGTATTAGAGAGCGACGATGATGAAGTTCACAAAGGCGGAGAGACAAGAGGTGCATGTGAACTACAAACTCGGGGGTTATAAACCAATCTCAGTTAGCAAACGAGTAAGAGAAAGAGCATCGTTCCCTGCTGAACATCCTTTACTAAAATCTCGAAAAAAACGAAACCCATTAGT

Coding sequence (CDS)

CTCGAACCGACGCCTGATTTCTTAGTTTTCATTTCTTTCGGCCTCGTCTCTCAGCCCTTTTTCACTCTTTCAACTTGGACGTCGGCCGTCGCATCTCCCTCTCCCGGCGTCCGCACCCGCCGCTTGGATCTCTGCAGTCACCGTGAGCTCATGTTATGCTTAAAGGATCTTCAGGGTTTTTTACACAAGAATTTTTCTGAATTGGAGATATCATTTTCAGGTCTGAACTAA

Protein sequence

LEPTPDFLVFISFGLVSQPFFTLSTWTSAVASPSPGVRTRRLDLCSHRELMLCLKDLQGFLHKNFSELEISFSGLN
Homology
[Close]
BLAST of Carg15626 vs. NCBI nr
Match: KAG7022727.1 (hypothetical protein SDJN02_16462, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 5.8e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  LEPTPDFLVFISFGLVSQPFFTLSTWTSAVASPSPGVRTRRLDLCSHRELMLCLKDLQGF 60
          LEPTPDFLVFISFGLVSQPFFTLSTWTSAVASPSPGVRTRRLDLCSHRELMLCLKDLQGF
Sbjct: 1  LEPTPDFLVFISFGLVSQPFFTLSTWTSAVASPSPGVRTRRLDLCSHRELMLCLKDLQGF 60

Query: 61 LHKNFSELEISFSGLN 77
          LHKNFSELEISFSGLN
Sbjct: 61 LHKNFSELEISFSGLN 76

[Close]
BLAST of Carg15626 vs. NCBI nr
Match: KAG6588959.1 (Protein-S-isoprenylcysteine O-methyltransferase B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 19 PFFTLSTWTSAVASPSPGVRTRRLDLCSHRELMLCLKDLQGFLHKNFSELEISFS 74
          PFFTLSTWTSAVASPSPGVRTRRLDLCSHRELMLCLKDLQGFLHKNFSELEISFS
Sbjct: 18 PFFTLSTWTSAVASPSPGVRTRRLDLCSHRELMLCLKDLQGFLHKNFSELEISFS 72

The following BLAST results are available for this feature:
BLAST of Carg15626 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022727.15.8e-35100.00hypothetical protein SDJN02_16462, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588959.11.5e-22100.00Protein-S-isoprenylcysteine O-methyltransferase B, partial [Cucurbita argyrosper... [more]
BLAST of Carg15626 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15626 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15626 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15626-RACarg15626-RAmRNA