Carg15621 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15621
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 11184152 .. 11186666 (-)
RNA-Seq ExpressionCarg15621
SyntenyCarg15621
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATTATAGTGAGAGGAATATCTTGAAACTCATACAGTCAGTGAGACGGCGTCGTTTTGGTTTGAAAGTGATTCCGTCCTGCTACTCAATTATTCATTGGTCACAGAAGGAAGTCGGACGTGACGCCACCATCCACCCCAATGACGCCACGTGTCAATTTGTCTTTAACCACGGACGTCAAAACTGACCGTTAACTCCATTTGACCAAACTAGCAGCGTCCGCTCTGTCAGTTGCGAAGGAAAGAAAGAAAAGGAACAAGGAAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGGATAGAGACGGAATCTCGAGTGGTCAAAGAAAAACTGCAAATACTGCAGAATCCTCTTTCAGCTCTCTTTGCCAGGGGGAAGATTCGTAGCTGTTTTCTTTCTGCTTGGATTTGAAGGTTTTTGCGAAATGATCTGCTTGCTTCAGGTATTTGGATTTCAAAGTTCGAATGGTTTTTGTTTTCTACTGTTTTGGTGGATTTTTCCGTTTGAAAAACTGGAAGAAATCGATAGGAACTTTGTGATTGTTGTACTGGTTTTAGATCTTGTCTGTATTGCATTTTGAGTGATTTGGAGATTTGGACTTAGATTTCGGGATTTTTTCCTTTGTTTTCGGCTTTTTGGATTTGATTATTGAAATGCTTAGAGGAACCTTGTGCTGATGTTTATCTGGCTTGATTTCTTGGCCTTTTGAAATGGTAGTGTGTGGGAAACTGGCTGAAGGTGAAGCGGTATGAATATCGAAGATTATGAGTCATGAGGGGAAAACCTTTATAAACTTAAAATTTCCTTTCAGTTTGTTTAGTTGAGATTTTTTAAATGTATACATGTATGATTATGGTGTCTTGGGCTTACTTCTTGCTCTGTGCTGATGGCTCACCCAACTAGTTTTGAGCAGCTTCATCCGTCCCAATAGAACAAAGTTTTTAAGAGATTTAAGTTCTCAACTAGAGGTTTGGACTAGGAACAGCCTTGGAGGGTGTGTCTAAATATCCCATGTCCTTATCTTATCGTTAAGTATTTGATGACTGATGGCTAAGAATGATTGTACTTCAATGTGATTTGTGGTTGAGATTTATCAGATGAGTGGGGTGCTCTAATGAACCGAAGTTAATTTATATCACAGCAAGCTTTGAATGTAGCTAAGAGTGGATATCTTAGTGACTATTTGAGAAGGGTTCGGTGTTCATTTGTAAGAATGGATAGGAATTTGAATATAATTCCATTTAGATTAGAACTTAGAAGTGGAGAAGATGTTTAGGGACAAGATCTCCATCTGTAGGAACGTTTTAGGGTGAAACCTAAAGAAAAATCATGCAGGCTTCAGCTTGAAATGAACAATACTGATATGTCGTGGAAATATGGTGTAACAGCCCAAATGTTGTCCTTTTTGGGCTTTCCCTTCAAAGTTTTAAAACATCGATATGTCGTGGAAATATGGTGTAACAGCTCAGATGTTGTCCGTCGTGGAAATATGGTGTAACAGCTCAGATGTTGTCCTTTTTGGGCTTTCCCTTCAAAGTTTTAAAACGTGTCTGCTAGGAAGGAGGTTCCACACTCTTATAAGGAATGGTTTGCTCCCCTCTCCAACCGACATGGGATCTCACAATCCACCCCTCTTGGGGGCCAGCGTCCTTGCTGGCACACTACCCAGTGATTGGCTCTAATACCATATGTAACAGCCCAAGTCCTCGCTAGTCGATATTGTCCTTTTTGAGCTTTCCGTTTTGGTATCTCCCTCAAAGTTTTAAACACATCTGCCACTCTCCCTCAAGGTTTTAAACACATCTGCCACCGTAGGTTTCCACACCTTTATAAGGAATGACCTGTTTGAAACCAAGTCTTGACTATGAAGTTTTCCATTCAATTCTTGCCTCTTTTCTTTGTAAACTTCTCGAAGGTCCATATAGGGACATTGTAAAGATCCCCTTGATGCAATCTCCCAAGCAATGTATTGAAGCCCATTGTATAGAGTGACGCCTTCAAAGTAATAGAGAACTCTTAATATCTGTAAGGGATGTCTCGTCTATCTTGCAAATCTAAAACATGGCTTGAGGCATCCAACTTCAATGAATGGCCAGATCTCTAGATCTTGACCGAGATTTAGACAACTCAATCCTTGATTGAACAGAGGTTAGATTATTGTTAAAATTTAAAAGTTTGTATGGATAATACTAAGAACTCCTTTCACCCCCTTCACTTTTCTTCCTTGCCCTCTCCTTTCACATTCCATCTCAAGATTTTCATAACAACCTCGAATCCCTATCCAAACTCTCCATGTCAAAACCTAGACAGTTTTACTAAAAGAGAAGATTTTTGAGTTTTTTGATTGCTTCATTCCATCTCTTTTACGGCCAGTCCTTTGTTTTGGATTTTTCTCGGAAATTCTATCAAGATGCCTATTAGGTGGTGAAGTGCTGGAGCATTGCTCCAGTCACATGGGTTGGTCAAGAAGCGAGCCAACAAGAGGAGTCTGCAAAAGGGAGCAAGTTACAATAA

mRNA sequence

ATGGACAATTATAGTGAGAGGAATATCTTGAAACTCATACAGTCAGTGAGACGGCGTCGTTTTGGTTTGAAAGTGATTCCGTCCTGCTACTCAATTATTCATTGGTCACAGAAGGAAGTCGGACGTGACGCCACCATCCACCCCAATGACGCCACCGTCCGCTCTGTCAGTTGCGAAGGAAAGAAAGAAAAGGAACAAGGAAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGGATAGAGACGGAATCTCGAGTGGTCAAAGAAAAACTGCAAATACTGCAGAATCCTCTTTCAGCTCTCTTTGCCAGGGGGAAGATTCGTTTTTGCGAAATGATCTGCTTGCTTCAGTGTGTGGGAAACTGGCTGAAGGTGAAGCGGTGGTGAAGTGCTGGAGCATTGCTCCAGTCACATGGGTTGGTCAAGAAGCGAGCCAACAAGAGGAGTCTGCAAAAGGGAGCAAGTTACAATAA

Coding sequence (CDS)

ATGGACAATTATAGTGAGAGGAATATCTTGAAACTCATACAGTCAGTGAGACGGCGTCGTTTTGGTTTGAAAGTGATTCCGTCCTGCTACTCAATTATTCATTGGTCACAGAAGGAAGTCGGACGTGACGCCACCATCCACCCCAATGACGCCACCGTCCGCTCTGTCAGTTGCGAAGGAAAGAAAGAAAAGGAACAAGGAAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGGATAGAGACGGAATCTCGAGTGGTCAAAGAAAAACTGCAAATACTGCAGAATCCTCTTTCAGCTCTCTTTGCCAGGGGGAAGATTCGTTTTTGCGAAATGATCTGCTTGCTTCAGTGTGTGGGAAACTGGCTGAAGGTGAAGCGGTGGTGAAGTGCTGGAGCATTGCTCCAGTCACATGGGTTGGTCAAGAAGCGAGCCAACAAGAGGAGTCTGCAAAAGGGAGCAAGTTACAATAA

Protein sequence

MDNYSERNILKLIQSVRRRRFGLKVIPSCYSIIHWSQKEVGRDATIHPNDATVRSVSCEGKKEKEQGRREEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDSFLRNDLLASVCGKLAEGEAVVKCWSIAPVTWVGQEASQQEESAKGSKLQ
Homology
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BLAST of Carg15621 vs. NCBI nr
Match: KAG7022723.1 (hypothetical protein SDJN02_16457, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MDNYSERNILKLIQSVRRRRFGLKVIPSCYSIIHWSQKEVGRDATIHPNDATVRSVSCEG 60
           MDNYSERNILKLIQSVRRRRFGLKVIPSCYSIIHWSQKEVGRDATIHPNDATVRSVSCEG
Sbjct: 1   MDNYSERNILKLIQSVRRRRFGLKVIPSCYSIIHWSQKEVGRDATIHPNDATVRSVSCEG 60

Query: 61  KKEKEQGRREEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDSFLRNDLLASVCGKL 120
           KKEKEQGRREEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDSFLRNDLLASVCGKL
Sbjct: 61  KKEKEQGRREEKRREEKDRDGISSGQRKTANTAESSFSSLCQGEDSFLRNDLLASVCGKL 120

Query: 121 AEGEAVVKCWSIAPVTWVGQEASQQEESAKGSKLQ 156
           AEGEAVVKCWSIAPVTWVGQEASQQEESAKGSKLQ
Sbjct: 121 AEGEAVVKCWSIAPVTWVGQEASQQEESAKGSKLQ 155

The following BLAST results are available for this feature:
BLAST of Carg15621 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022723.15.1e-78100.00hypothetical protein SDJN02_16457, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15621 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15621 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15621 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15621-RACarg15621-RAmRNA