Carg15600 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15600
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr11: 11038506 .. 11043424 (-)
RNA-Seq Expression	Carg15600
Synteny	Carg15600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGGGAGGGTTTTGGAGAGAAAAACCTCGCCGGAGAAACAGACTAGGCTCCATTTCTCTCCGCTCCGTCGATCGATTTCAGTACCAATGAAGCTCCTTCAATCTGTCACCAGTACTGCTTCATCTCTCTGAATTTGTTCATTCCTCAATTTCGATCCATTGTTTTAGCTTATACGCTTCTCGTTTTTCCATTTATGTTCAGGTCACAGCCGCTCGCTTGTTCGTCTTCTTGGACAGCGTCGATCCTTTGCTGTTTCTACTGAAGAGTACAGTAAAAGGAATTACGCCGACAACGTCTCCGAGTACAACACTGTAATTGGCTCCATCACTGCTCAGAGAAGGTATTGTTTCCGTTTCCTTCTTTTCTCGCCTTTTTTATTGTTCGGTTTTTTTGTTCTTGTGTATTTTAAATGATGTGTTGTGTTATGTGTATCTGGTTCAGGTATTTCTTGTTGAGGGATGTGTATGATGATATGATGTTGGATGGAGTGCAGCCTACAATGGACGTTTTCCATTCGCTGATTACTGGATCCATGAAAGGCGCTCGTTTCCAAGATGCATTTTTCTTCAGAGATGAAATGAAGGCCATGGGGTTGATTCCTGATGTAGGTACTTTTTGGAAATGAATTGAGTCTTTTTTCTCTCTCTCACGTTATGCTCTAAATCTTTCGATTCTTCATTTTCTTATTTTTGGCAACCTTTGTTTCTGTATGTGCATATATGTTTTGTAGGTTACTCTGTATAACATGCTGATCTCATTATGTGGTAAATGCAACAACTCTGAAGAGGCTGTCCGGGTAGGTTTCTGTTTGTTTTTAAAGCCCAACTTTTTGTTTTGTTTTTTTTTTTTTTATAGTCATCGAAGGAAAATTCAGAACTTTCTGTTGATTTTCAACTATTCTGTGTTTGATTGAAGATCTTAGATGAGATGAGGAGATATGAAGTGAAGCCACATTCACAGACATACATCTGCCTACTTAATGCCTGTGCAGTTGCTGGTAGATTAGATCGCGTGTATGCTACTTCTTTCACTACCTACACTCTTATTCTTTTGCCTGCAAGTATTATAATCCTGTATCCTTAATGTTGTATCTGATAAATCGATGGAAGAAAAACTATCACCACTACATTCAGTCACTTTCTATTTCCTAAGATTAATGGCCTTAGATTCATCTTCACCTTGCTCTTAGTTTTTTTTTCCAAACAATCGAGTATATCTTGGAGACTCGGTATAATAATTGACAAGGTTTTTCGTCGATATTTTAGGTATACAATTGTCAGAGATATGACTGCTGCTGGCCTTGGCTTAAACAAGTTCTGCTATACTGGACTTATAGCTGCACATATGAACAAGAAACCTGTGGCTGATGATTTTGCTACTAAAGTAACAATCACCTTAGCTGTTTTTCTTGTCCTTGTAATGTTTGGTTGGTGATTTATGAACACAATTTTACTTTTCTATGATAAGGTTGTTGAATTTGTTGAACGGTCGAAGGAATGGTTATCAGTTGATGCATCAAGTGCAACGGCTGAAAATGTGATGATGGGTGTTTCAGAAGAGGAACTGTACAATATTCCTACTGCGGAATATGTTCATAGGCGTGGAGGTTTTTTGAACAGACAATTGACTATTTATCATGTTGCTTTGCATGCCTGTGCGAATCTCAAGAATGTAGAGGTATCTGATTCTTAATTCCAGCAACATCTGGATATATATTGTTGGATAAACTTATTCAGATCAGTCCCTCTTTATTTCATTTGTGTGCAATTGCATATATGATCCTGCTATATTTAGGTCTTCTAATATGTAATATCATCATTTCTTACATAGTAGATGTCATCTATTCTCTTTTATAATCATGTTATAACTTAATTTCTATCATGCAATGTGTCTAAATGTCCTTGTTATGAATTTCTGTATAAAATACTTATGTTTCTTATCAGCTTTTTTTTTTTTTTTTTTCAAATCAAAGTAGGTGATGGAGACCATAATGGACATGTTAAAGAAGGATGGAAAAACTCCCGATGTTTTCATAGTAATACAAGTCATGAGGTGAAAGGCTCTTTCCAAAAACTAAATTGTGTTGTCTAATCCACGCAGTTTATAATTAAATGTCAAAGCATGGATCAACTCGGTTTTCATTATTGCACTAATTGCACGAGAATATTTTTTGGCTCACAATTACCTCAATTCTGCAATTTGTTCAGATTGAATTGGTTAGGTGTTCATCAGATCACTTCTTGTTTTGATGGGAATGACTGCAGCCATAAATTCTAAAGATCAAACTGTGATGTTATTATAACTATGAAGTTTGTATAGATCTAATGAAACTACAGCTTGCCCTTGTTTCTGCATTGATCCACCAAGCTTGATCTAATGTGGTTGCCAGTTGAGTGTTCTTTGGTTTACTATTAGACCAGTAGTGGAAGCATGAATTGGCTTGATTGAACTCATTTTAGCAGCTCTTTTCATAATTCTGTTTCTGTTTTTAACATACTCCGCTTGGTGGCTTTTGTATTGGTGGTTTTTTTTTCATATTCTCGTATCGTTTATACTTGACATGTAGTTTGAATGAAAGTGGTGATGATCACATATCAGTAGAATGCAAAAGTTACTTTTGTCTTGTTTTGTTATTTTTGGCATCTCATTTGTAGGATACTTGGTGGTCAAATTTCCTACCGAGTCATTTGAAGGATACCTGTTTTGTTATTTTGGCATCTCATCTCATTTGTAGGACACATGTCTGGCTAGGACTGCTAATACAGTTCTTCTGCTAAATATTTGTATGGAGTTAGAGGCTTGTTTATAAATATTGATTATACAGGACATAAGTATTGTTTATAACTAACTTCTCACAGATGCTATCTACATTCTGGAGATATTGATCGTGGTCTTAAAGCTTTTGAGGAGCACTTGAATTCTGGGGGTCTTCCAGCAGCAGAACTCTATGCAGTGAGTTTGGCCCAACTATGTTTCTGCTTTTACTGCATATTAACTGTTTCTTATCCAAAAAAAGGCAAAAAAAAAAAAAAAAAAAAAAAATCTATAGTCCTTGTTATCTTGGCTTTTTATGTTTGAGTGTCTGTCAGAGATTTCTCAGAATCGTGAGAGAGAGTGTGAGTTAACTGTTTCTAATATTTGTGTATTTTATCTCCCTTCCAAATGAGATTGCAGTAGTCTAGACACTTGAAACGAGTGATACAAGATTTTTCATTTAAGGAATTCAAGATAACTATTACCAAGATTTAGCTATTGTTTTCATGTGGTTGTAGACGCTTGTTGAGGGAGCCATGATTGGTTATACGCCAAAGGGAATGCAATTGGCTCAAGAAACACTGGTAACTTCCAATTTCTACTAAAATTACAATAGAAATTGACTTGATCTAAGGAATGTTATTTTGAATTTAATGCTTATTGCAGGTAAATATGAATTCCAGGGGCTTTTTCTTGAACCCCAAATTAGGGAGTGACCTCCTCCTTGCAGCAGCGGGAGAGAAGGTAGGTTGATGGTTTATCACATTTTTAGATCACGAGACCCTTGTGGGTAACAGCTAGCTGCTCAAAATTCTGATATTTATCACTGTAGGTTCATGTGATTAAAAAATGAGTTATTTATTTATTTATTGTATTACCATGCAGACCGGTGGGTATACGACTGCAAATTATATATGGGATCTCTTGCAAGCTCGAAAGATAACTCCTTCACTTCCAGCAGTGGAAGCTTATTACAATGGATTGAAGGTGATTCTCTTGGCTTTCACTTTAATCCTTTTATTATGGTATTTGTTATCCTCGGCATTGATATTTGATAATTAATACATACAACTCCATTCTAGTAGTAGTTAGAGTCTGGTCGAGTTGACATTCATCAGAGGTTTACCCAATTACTGGCATTCATTTCGGTGATATTTGATAGTTTCTCTTTTGAAGGCATCTTATTCTTGTGTATTCTTGCACTAAATCAAATTGAGTAGAAGTTTACTACCTAAAATGCTTGAGATTTGAAATAAACTAAAAATAACTGTAACAGTATACCTGGAAAACTATGAAAGAATGTATTTCCATTGTACGTAATATATTGAGTGTATTCCCCACATTTGACTCTAAATGATTTGGTAGTTTGAATCGAACCGAAAGTTCGATAATCAAGTTTGATGTGTCCCTGCTTGAAAGATATTACCTAAGCCTATGATAAACAGTGCTTTATTTTACTATCTACATATACTTGGTTACGTTTACTAATTCATTGAGCTCCCCAATCACGGGATATGCTTTTTTTGTCCCTGTTTTTGTAAGTCAAAAGTTCCTTTGCTAATGGAAAGCTTTTGATTTGTAGGAACGTGAGATTCCTGAAGAAGATCCTAGGCTTTTATTAGTTTCTCGAACCTACAGCAATCTTCGGGTTAGATCTGGTGGCAGTGGACCTGGCCGATCATAATTCAAATCAAAACGATGCAGGGCACAGTTGCCATCGGTTTCTCACTGCCAGTATCGATATTGGTGAGCTTTTGCAGTGACCTTATAGCTAACCATATTGAGAAAGGTTTGCAGGGACCTTATATTGATGTACCTGTTAGATGGAGAGAGGTTTGCCAAAAAGATTTTATGTATGTTACTGGTTGACATAGAATCATTCTGTGGGTTAGGAATAGCTAGATTGTTTCTTACATTTGAAATTGCCAAATCCAAATTCTTTCAGAATAATATCAACCATGATTTCAATGGATTCTTCTTTGTCAGTTGAAATTATTGTGCATTATGATGTGTTAACCGATTTTCTTAAAGTGAAAGTGGAGATTTGATAGCAATTTGTTTTGGCTTTAGTTTGGATGTTTATTTACATCTTATTGTGCTTGTGCAATTCCATTAGTTCATGAGTATTCATTTCATTCTCAGATGGTAATTAATATATATTCT

mRNA sequence

AAACGGGAGGGTTTTGGAGAGAAAAACCTCGCCGGAGAAACAGACTAGGCTCCATTTCTCTCCGCTCCGTCGATCGATTTCAGTACCAATGAAGCTCCTTCAATCTGTCACCAGTCACAGCCGCTCGCTTGTTCGTCTTCTTGGACAGCGTCGATCCTTTGCTGTTTCTACTGAAGAGTACAGTAAAAGGAATTACGCCGACAACGTCTCCGAGTACAACACTGTAATTGGCTCCATCACTGCTCAGAGAAGGTATTTCTTGTTGAGGGATGTGTATGATGATATGATGTTGGATGGAGTGCAGCCTACAATGGACGTTTTCCATTCGCTGATTACTGGATCCATGAAAGGCGCTCGTTTCCAAGATGCATTTTTCTTCAGAGATGAAATGAAGGCCATGGGGTTGATTCCTGATGTTACTCTGTATAACATGCTGATCTCATTATGTGGTAAATGCAACAACTCTGAAGAGGCTGTCCGGATCTTAGATGAGATGAGGAGATATGAAGTGAAGCCACATTCACAGACATACATCTGCCTACTTAATGCCTGTGCAGTTGCTGGTAGATTAGATCGCGTGTATACAATTGTCAGAGATATGACTGCTGCTGGCCTTGGCTTAAACAAGTTCTGCTATACTGGACTTATAGCTGCACATATGAACAAGAAACCTGTGGCTGATGATTTTGCTACTAAAGTTGTTGAATTTGTTGAACGGTCGAAGGAATGGTTATCAGTTGATGCATCAAGTGCAACGGCTGAAAATGTGATGATGGGTGTTTCAGAAGAGGAACTGTACAATATTCCTACTGCGGAATATGTTCATAGGCGTGGAGGTTTTTTGAACAGACAATTGACTATTTATCATGTTGCTTTGCATGCCTGTGCGAATCTCAAGAATGTAGAGGTGATGGAGACCATAATGGACATGTTAAAGAAGGATGGAAAAACTCCCGATGTTTTCATAGTAATACAAGTCATGAGATGCTATCTACATTCTGGAGATATTGATCGTGGTCTTAAAGCTTTTGAGGAGCACTTGAATTCTGGGGGTCTTCCAGCAGCAGAACTCTATGCAACGCTTGTTGAGGGAGCCATGATTGGTTATACGCCAAAGGGAATGCAATTGGCTCAAGAAACACTGGTAAATATGAATTCCAGGGGCTTTTTCTTGAACCCCAAATTAGGGAGTGACCTCCTCCTTGCAGCAGCGGGAGAGAAGACCGGTGGGTATACGACTGCAAATTATATATGGGATCTCTTGCAAGCTCGAAAGATAACTCCTTCACTTCCAGCAGTGGAAGCTTATTACAATGGATTGAAGGAACGTGAGATTCCTGAAGAAGATCCTAGGCTTTTATTAGTTTCTCGAACCTACAGCAATCTTCGGGTTAGATCTGGTGGCAGTGGACCTGGCCGATCATAATTCAAATCAAAACGATGCAGGGCACAGTTGCCATCGGTTTCTCACTGCCAGTATCGATATTGGTGAGCTTTTGCAGTGACCTTATAGCTAACCATATTGAGAAAGGTTTGCAGGGACCTTATATTGATGTACCTGTTAGATGGAGAGAGGTTTGCCAAAAAGATTTTATGTATGTTACTGGTTGACATAGAATCATTCTGTGGGTTAGGAATAGCTAGATTGTTTCTTACATTTGAAATTGCCAAATCCAAATTCTTTCAGAATAATATCAACCATGATTTCAATGGATTCTTCTTTGTCAGTTGAAATTATTGTGCATTATGATGTGTTAACCGATTTTCTTAAAGTGAAAGTGGAGATTTGATAGCAATTTGTTTTGGCTTTAGTTTGGATGTTTATTTACATCTTATTGTGCTTGTGCAATTCCATTAGTTCATGAGTATTCATTTCATTCTCAGATGGTAATTAATATATATTCT

Coding sequence (CDS)

ATGAAGCTCCTTCAATCTGTCACCAGTCACAGCCGCTCGCTTGTTCGTCTTCTTGGACAGCGTCGATCCTTTGCTGTTTCTACTGAAGAGTACAGTAAAAGGAATTACGCCGACAACGTCTCCGAGTACAACACTGTAATTGGCTCCATCACTGCTCAGAGAAGGTATTTCTTGTTGAGGGATGTGTATGATGATATGATGTTGGATGGAGTGCAGCCTACAATGGACGTTTTCCATTCGCTGATTACTGGATCCATGAAAGGCGCTCGTTTCCAAGATGCATTTTTCTTCAGAGATGAAATGAAGGCCATGGGGTTGATTCCTGATGTTACTCTGTATAACATGCTGATCTCATTATGTGGTAAATGCAACAACTCTGAAGAGGCTGTCCGGATCTTAGATGAGATGAGGAGATATGAAGTGAAGCCACATTCACAGACATACATCTGCCTACTTAATGCCTGTGCAGTTGCTGGTAGATTAGATCGCGTGTATACAATTGTCAGAGATATGACTGCTGCTGGCCTTGGCTTAAACAAGTTCTGCTATACTGGACTTATAGCTGCACATATGAACAAGAAACCTGTGGCTGATGATTTTGCTACTAAAGTTGTTGAATTTGTTGAACGGTCGAAGGAATGGTTATCAGTTGATGCATCAAGTGCAACGGCTGAAAATGTGATGATGGGTGTTTCAGAAGAGGAACTGTACAATATTCCTACTGCGGAATATGTTCATAGGCGTGGAGGTTTTTTGAACAGACAATTGACTATTTATCATGTTGCTTTGCATGCCTGTGCGAATCTCAAGAATGTAGAGGTGATGGAGACCATAATGGACATGTTAAAGAAGGATGGAAAAACTCCCGATGTTTTCATAGTAATACAAGTCATGAGATGCTATCTACATTCTGGAGATATTGATCGTGGTCTTAAAGCTTTTGAGGAGCACTTGAATTCTGGGGGTCTTCCAGCAGCAGAACTCTATGCAACGCTTGTTGAGGGAGCCATGATTGGTTATACGCCAAAGGGAATGCAATTGGCTCAAGAAACACTGGTAAATATGAATTCCAGGGGCTTTTTCTTGAACCCCAAATTAGGGAGTGACCTCCTCCTTGCAGCAGCGGGAGAGAAGACCGGTGGGTATACGACTGCAAATTATATATGGGATCTCTTGCAAGCTCGAAAGATAACTCCTTCACTTCCAGCAGTGGAAGCTTATTACAATGGATTGAAGGAACGTGAGATTCCTGAAGAAGATCCTAGGCTTTTATTAGTTTCTCGAACCTACAGCAATCTTCGGGTTAGATCTGGTGGCAGTGGACCTGGCCGATCATAA

Protein sequence

MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIPTAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGFFLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEEDPRLLLVSRTYSNLRVRSGGSGPGRS

Homology

[Close]

BLAST of Carg15600 vs. NCBI nr
Match: KAG7022703.1 (Pentatricopeptide repeat-containing protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 888.3 bits (2294), Expect = 2.8e-254
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR
Sbjct: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP
Sbjct: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC
Sbjct: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED
Sbjct: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVSRTYSNLRVRSGGSGPGRS
Sbjct: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 445

[Close]

BLAST of Carg15600 vs. NCBI nr
Match: XP_022928173.1 (pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Cucurbita moschata])

HSP 1 Score: 886.7 bits (2290), Expect = 8.2e-254
Identity = 444/445 (99.78%), Postives = 444/445 (99.78%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR
Sbjct: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP
Sbjct: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC
Sbjct: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPS PAVEAYYNGLKEREIPEED
Sbjct: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSFPAVEAYYNGLKEREIPEED 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVSRTYSNLRVRSGGSGPGRS
Sbjct: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 445

[Close]

BLAST of Carg15600 vs. NCBI nr
Match: KAG6588934.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 885.2 bits (2286), Expect = 2.4e-253
Identity = 443/445 (99.55%), Postives = 443/445 (99.55%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR
Sbjct: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP
Sbjct: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC
Sbjct: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRGLKAFEEHLNSGGLPAAELY TLVEGAMIGYTPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYTTLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPS PAVEAYYNGLKEREIPEED
Sbjct: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSFPAVEAYYNGLKEREIPEED 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVSRTYSNLRVRSGGSGPGRS
Sbjct: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 445

[Close]

BLAST of Carg15600 vs. NCBI nr
Match: XP_022989560.1 (pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Cucurbita maxima])

HSP 1 Score: 878.2 bits (2268), Expect = 2.9e-251
Identity = 439/445 (98.65%), Postives = 442/445 (99.33%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVT HSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR
Sbjct: 1   MKLLQSVTGHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDD+MLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDLMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP
Sbjct: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC
Sbjct: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRGLKAFEEHLNSGG PAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHSGDIDRGLKAFEEHLNSGGPPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPS PAVEAYYNGLKEREIPE+D
Sbjct: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSSPAVEAYYNGLKEREIPEDD 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVSRTY+NLRVRSGGSGPGRS
Sbjct: 421 PRLLLVSRTYNNLRVRSGGSGPGRS 445

[Close]

BLAST of Carg15600 vs. NCBI nr
Match: XP_023531734.1 (pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 873.2 bits (2255), Expect = 9.3e-250
Identity = 435/445 (97.75%), Postives = 441/445 (99.10%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVT HSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLL+
Sbjct: 1   MKLLQSVTGHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLK 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           +CYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP
Sbjct: 181 YCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETI+DMLKKDGKTPDVFIVIQVMRC
Sbjct: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETILDMLKKDGKTPDVFIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLH+GDIDRGLKAFEEHLNSGG PAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHAGDIDRGLKAFEEHLNSGGPPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPS PAVEAYYNGLKEREIPE+D
Sbjct: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSFPAVEAYYNGLKEREIPEDD 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVS+TYSNLRVRSGG GPGRS
Sbjct: 421 PRLLLVSQTYSNLRVRSGGRGPGRS 445

[Close]

BLAST of Carg15600 vs. ExPASy Swiss-Prot
Match: Q8VYR5 (Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g35850 PE=1 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 1.1e-171
Identity = 281/436 (64.45%), Postives = 358/436 (82.11%), Query Frame = 0


Query: 3   LLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLRDV 62
           L+QS++  +RSLVR L  RR FA S EE +KRNYA+++SEYNT + S+TAQRR++LLRDV
Sbjct: 4   LMQSISGRNRSLVRALVSRRYFASSPEEIAKRNYANDLSEYNTAVNSVTAQRRHYLLRDV 63

Query: 63  YDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGK 122
           YDDM LDGVQPT D+FHS + G+MKGAR  DAFFFR+EMKAMG+ PDV LYN LIS CGK
Sbjct: 64  YDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGK 123

Query: 123 CNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFC 182
           C N +EA+R+ DEM+RY+VKP+ QT++CLLNACAV+G+LD VY IVRDMTAAG+GLN+FC
Sbjct: 124 CKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQFC 183

Query: 183 YTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIPTA 242
           Y GLI AH+NK+P  D+ +TK++EFVE+SK W ++D+S  +AE+VM  +SEEELYNIPTA
Sbjct: 184 YAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIPTA 243

Query: 243 EYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYL 302
           +Y HR   FL R LT+YHVA  A A+LK+V+  E +++MLKKDGK  D + ++Q+MRCYL
Sbjct: 244 DYSHRT-RFLQRNLTVYHVAFSALADLKDVKATEALLEMLKKDGKDTDTYCMLQIMRCYL 303

Query: 303 HSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGFFL 362
           HS D + GLK F++++++  +PA ELY TL+EGAM GYT  GM++AQ+TL+ MN R FFL
Sbjct: 304 HSQDFENGLKLFQDYMSADKIPAMELYTTLIEGAMTGYTDNGMKIAQDTLIQMNERNFFL 363

Query: 363 NPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEEDPR 422
           +P+ GS+LLL AAGEKTGGYT AN IWDL+ AR I P+L AVEAYY GLKEREIPE+DPR
Sbjct: 364 DPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARNILPTLAAVEAYYKGLKEREIPEDDPR 423

Query: 423 LLLVSRTYSNLRVRSG 439
           L+LV+RTY+NLR+R G
Sbjct: 424 LMLVTRTYNNLRLREG 438

[Close]

BLAST of Carg15600 vs. ExPASy Swiss-Prot
Match: Q9FIT7 (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-21
Identity = 79/308 (25.65%), Postives = 140/308 (45.45%), Query Frame = 0


Query: 30  EYSKRNYADNVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLITGSMKGA 89
           E  KRN   +   Y TV+  + +        ++  +M+  G +P + ++ +LI   ++ +
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466

Query: 90  RFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVKPHSQTYI 149
           RF DA     EMK  G+ PD+  YN LI    K    +EA   L EM    +KP++ TY 
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 150 CLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFATKVVEFVE 209
             ++    A         V++M   G+  NK   TGLI  +  K  V +  +        
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS------AY 586

Query: 210 RSKEWLSVDASSATAENVMMGVSEEELYNIPTAEYVHR--RGGFLNRQLTIYHVALHACA 269
           RS     +   + T   +M G+ + +   +  AE + R  RG  +   +  Y V ++  +
Sbjct: 587 RSMVDQGILGDAKTYTVLMNGLFKND--KVDDAEEIFREMRGKGIAPDVFSYGVLINGFS 646

Query: 270 NLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGGLPAAE 329
            L N++   +I D + ++G TP+V I   ++  +  SG+I++  +  +E    G  P A 
Sbjct: 647 KLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 706

Query: 330 LYATLVEG 336
            Y T+++G
Sbjct: 707 TYCTIIDG 706

[Close]

BLAST of Carg15600 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.4e-19
Identity = 79/300 (26.33%), Postives = 125/300 (41.67%), Query Frame = 0


Query: 39  NVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFR 98
           N+  YN VI  +  + R   +  V  +M   G       +++LI G  K   F  A    
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333

Query: 99  DEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVA 158
            EM   GL P V  Y  LI    K  N   A+  LD+MR   + P+ +TY  L++  +  
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393

Query: 159 GRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVD 218
           G ++  Y ++R+M   G   +   Y  LI  H     + D  A  V+E  +  ++ LS D
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED--AIAVLE--DMKEKGLSPD 453

Query: 219 ASSATAENVMMGVSEEELYNIPTAEYVHR---RGGFLNRQLTIYHVALHACANLKNVEVM 278
             S +   V+ G      Y++  A  V R     G     +T   +    C   +  E  
Sbjct: 454 VVSYS--TVLSGFCRS--YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 513

Query: 279 ETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEG 336
           +   +ML+  G  PD F    ++  Y   GD+++ L+   E +  G LP    Y+ L+ G
Sbjct: 514 DLYEEMLRV-GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564

[Close]

BLAST of Carg15600 vs. ExPASy Swiss-Prot
Match: Q940A6 (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-15
Identity = 76/313 (24.28%), Postives = 126/313 (40.26%), Query Frame = 0


Query: 23  SFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLI 82
           +F +  E   +    D VS YNT+I     +++        D+M+  G++P    +  LI
Sbjct: 537 AFRIQKEILGRGCVMDRVS-YNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 596

Query: 83  TGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVK 142
            G     + ++A  F D+ K  G++PDV  Y+++I  C K   +EE     DEM    V+
Sbjct: 597 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 656

Query: 143 PHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFAT 202
           P++  Y  L+ A   +GRL     +  DM   G+  N   YT LI        +      
Sbjct: 657 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG----MSIISRVEE 716

Query: 203 KVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIPTAEYVHRRGGFLNRQLTIYHVA 262
             + F E   E L  +    TA     G   + +        +H +    N+    Y V 
Sbjct: 717 AKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK--ITYTVM 776

Query: 263 LHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGG 322
           +   A   NV     +++ +++ G  PD     + +  YL  G +    K  +E      
Sbjct: 777 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE------ 832

Query: 323 LPAAELYATLVEG 336
               E YA ++EG
Sbjct: 837 ----ENYAAIIEG 832

[Close]

BLAST of Carg15600 vs. ExPASy Swiss-Prot
Match: P0C894 (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-14
Identity = 76/315 (24.13%), Postives = 128/315 (40.63%), Query Frame = 0


Query: 40  VSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRD 99
           V  YN +I  +  +      R ++++M   G+ P    ++S+I G  K  R  D   F +
Sbjct: 262 VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFE 321

Query: 100 EMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAG 159
           EMK M   PDV  YN LI+   K       +    EM+   +KP+  +Y  L++A    G
Sbjct: 322 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEG 381

Query: 160 RLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDA 219
            + +      DM   GL  N++ YT LI A+     ++D F     E ++   EW  V  
Sbjct: 382 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG-NEMLQVGVEWNVVTY 441

Query: 220 SS---ATAENVMMGVSEEELYNIPTAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVME 279
           ++      +   M  +EE    + TA  +          L  Y+  +H     KN++   
Sbjct: 442 TALIDGLCDAERMKEAEELFGKMDTAGVI--------PNLASYNALIHGFVKAKNMDRAL 501

Query: 280 TIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGA 339
            +++ LK  G  PD+ +    +        I+       E    G    + +Y TL++  
Sbjct: 502 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 561

Query: 340 MIGYTP-KGMQLAQE 351
                P +G+ L  E
Sbjct: 562 FKSGNPTEGLHLLDE 567

[Close]

BLAST of Carg15600 vs. ExPASy TrEMBL
Match: A0A6J1EN55 (pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111435075 PE=4 SV=1)

HSP 1 Score: 886.7 bits (2290), Expect = 4.0e-254
Identity = 444/445 (99.78%), Postives = 444/445 (99.78%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR
Sbjct: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP
Sbjct: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC
Sbjct: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPS PAVEAYYNGLKEREIPEED
Sbjct: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSFPAVEAYYNGLKEREIPEED 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVSRTYSNLRVRSGGSGPGRS
Sbjct: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 445

[Close]

BLAST of Carg15600 vs. ExPASy TrEMBL
Match: A0A6J1JMQ0 (pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111486622 PE=4 SV=1)

HSP 1 Score: 878.2 bits (2268), Expect = 1.4e-251
Identity = 439/445 (98.65%), Postives = 442/445 (99.33%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVT HSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR
Sbjct: 1   MKLLQSVTGHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDD+MLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDLMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP
Sbjct: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC
Sbjct: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRGLKAFEEHLNSGG PAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHSGDIDRGLKAFEEHLNSGGPPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPS PAVEAYYNGLKEREIPE+D
Sbjct: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSSPAVEAYYNGLKEREIPEDD 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVSRTY+NLRVRSGGSGPGRS
Sbjct: 421 PRLLLVSRTYNNLRVRSGGSGPGRS 445

[Close]

BLAST of Carg15600 vs. ExPASy TrEMBL
Match: A0A6J1DFC0 (pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111019974 PE=4 SV=1)

HSP 1 Score: 838.2 bits (2164), Expect = 1.6e-239
Identity = 415/445 (93.26%), Postives = 430/445 (96.63%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSVT HSRSLVRLLGQRRSFA STEEYSKRNYADNV+EYNTVIGSITAQRRYFLLR
Sbjct: 1   MKLLQSVTGHSRSLVRLLGQRRSFAASTEEYSKRNYADNVAEYNTVIGSITAQRRYFLLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFHSLITG+MKGARFQDA FFRDEMKAMGLIPDVTLYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHSLITGTMKGARFQDAIFFRDEMKAMGLIPDVTLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKC NSEEAVRILDEMRRYEVKPHSQTYICLLNACA AGRLDRVYTIVRDMTAAGLGLNK
Sbjct: 121 GKCKNSEEAVRILDEMRRYEVKPHSQTYICLLNACAAAGRLDRVYTIVRDMTAAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSV+ASS TAENVMMGVSEEELYNIP
Sbjct: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVEASSITAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYV+RRGGFLNRQLT+YHVALHACANL+NVEVMETI++MLKKDGKTPDV+IVIQVMRC
Sbjct: 241 TAEYVNRRGGFLNRQLTVYHVALHACANLRNVEVMETILEMLKKDGKTPDVYIVIQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRGLK FEEHLNSG  P+AELYATLVEGAMIG+TPKGMQLAQETLVNMNSRGF
Sbjct: 301 YLHSGDIDRGLKTFEEHLNSGSPPSAELYATLVEGAMIGHTPKGMQLAQETLVNMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FL+PK+GSDLLLAAAGEKTGGYTTANYIWDLLQARKITP+ PAVEAYY GLKEREIPE+D
Sbjct: 361 FLSPKMGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPTFPAVEAYYKGLKEREIPEDD 420

Query: 421 PRLLLVSRTYSNLRVRSGGSGPGRS 446
           PRLLLVSRTY NLRVR GG  PGRS
Sbjct: 421 PRLLLVSRTYDNLRVRFGGGRPGRS 445

[Close]

BLAST of Carg15600 vs. ExPASy TrEMBL
Match: A0A5D3D5B2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00370 PE=4 SV=1)

HSP 1 Score: 792.3 bits (2045), Expect = 1.0e-225
Identity = 394/439 (89.75%), Postives = 413/439 (94.08%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSV   SRSLVR LGQRRSFAVSTEEY KRNYADNVSEY TVI S+T+QRRYF LR
Sbjct: 1   MKLLQSVAGQSRSLVRFLGQRRSFAVSTEEYRKRNYADNVSEYKTVIASLTSQRRYFSLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFH LITG+MKGARFQ AFFFRDEMKAMGLIPDV+LYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHLLITGTMKGARFQHAFFFRDEMKAMGLIPDVSLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKP+SQTYICLLNACA AGRLDRVYTIVRDMT+AGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPNSQTYICLLNACAAAGRLDRVYTIVRDMTSAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCY GLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASS TAENVMMGVSEEELYNIP
Sbjct: 181 FCYAGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSVTAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLN+QLTIYHVAL+ACANLKNVEVMETIMDMLKKDGKTPDV+I++QVMRC
Sbjct: 241 TAEYVHRRGGFLNKQLTIYHVALNACANLKNVEVMETIMDMLKKDGKTPDVYIIMQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRG KAFEEHLNSGG  AAELY+TLVEGAMIGYTPKGMQLAQETL NMNSRGF
Sbjct: 301 YLHSGDIDRGHKAFEEHLNSGGSVAAELYSTLVEGAMIGYTPKGMQLAQETLENMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLN +LGS+LLLAAAGEKTGGYTTANYIWDLLQAR+ITPS  AV+AYY GLK+REIPE+D
Sbjct: 361 FLNARLGSELLLAAAGEKTGGYTTANYIWDLLQARQITPSFAAVDAYYRGLKDREIPEDD 420

Query: 421 PRLLLVSRTYSNLRVRSGG 440
            RLLLVSR + NLR R GG
Sbjct: 421 ARLLLVSRIHENLRARFGG 439

[Close]

BLAST of Carg15600 vs. ExPASy TrEMBL
Match: A0A1S3CMS3 (pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502690 PE=4 SV=1)

HSP 1 Score: 792.3 bits (2045), Expect = 1.0e-225
Identity = 394/439 (89.75%), Postives = 413/439 (94.08%), Query Frame = 0


Query: 1   MKLLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLR 60
           MKLLQSV   SRSLVR LGQRRSFAVSTEEY KRNYADNVSEY TVI S+T+QRRYF LR
Sbjct: 1   MKLLQSVAGQSRSLVRFLGQRRSFAVSTEEYRKRNYADNVSEYKTVIASLTSQRRYFSLR 60

Query: 61  DVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLC 120
           DVYDDMMLDGVQPTMDVFH LITG+MKGARFQ AFFFRDEMKAMGLIPDV+LYNMLISLC
Sbjct: 61  DVYDDMMLDGVQPTMDVFHLLITGTMKGARFQHAFFFRDEMKAMGLIPDVSLYNMLISLC 120

Query: 121 GKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNK 180
           GKCNNSEEAVRILDEMRRYEVKP+SQTYICLLNACA AGRLDRVYTIVRDMT+AGLGLNK
Sbjct: 121 GKCNNSEEAVRILDEMRRYEVKPNSQTYICLLNACAAAGRLDRVYTIVRDMTSAGLGLNK 180

Query: 181 FCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIP 240
           FCY GLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASS TAENVMMGVSEEELYNIP
Sbjct: 181 FCYAGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSVTAENVMMGVSEEELYNIP 240

Query: 241 TAEYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRC 300
           TAEYVHRRGGFLN+QLTIYHVAL+ACANLKNVEVMETIMDMLKKDGKTPDV+I++QVMRC
Sbjct: 241 TAEYVHRRGGFLNKQLTIYHVALNACANLKNVEVMETIMDMLKKDGKTPDVYIIMQVMRC 300

Query: 301 YLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGF 360
           YLHSGDIDRG KAFEEHLNSGG  AAELY+TLVEGAMIGYTPKGMQLAQETL NMNSRGF
Sbjct: 301 YLHSGDIDRGHKAFEEHLNSGGSVAAELYSTLVEGAMIGYTPKGMQLAQETLENMNSRGF 360

Query: 361 FLNPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEED 420
           FLN +LGS+LLLAAAGEKTGGYTTANYIWDLLQAR+ITPS  AV+AYY GLK+REIPE+D
Sbjct: 361 FLNARLGSELLLAAAGEKTGGYTTANYIWDLLQARQITPSFAAVDAYYRGLKDREIPEDD 420

Query: 421 PRLLLVSRTYSNLRVRSGG 440
            RLLLVSR + NLR R GG
Sbjct: 421 ARLLLVSRIHENLRARFGG 439

[Close]

BLAST of Carg15600 vs. TAIR 10
Match: AT4G35850.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 604.4 bits (1557), Expect = 7.5e-173
Identity = 281/436 (64.45%), Postives = 358/436 (82.11%), Query Frame = 0


Query: 3   LLQSVTSHSRSLVRLLGQRRSFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLRDV 62
           L+QS++  +RSLVR L  RR FA S EE +KRNYA+++SEYNT + S+TAQRR++LLRDV
Sbjct: 4   LMQSISGRNRSLVRALVSRRYFASSPEEIAKRNYANDLSEYNTAVNSVTAQRRHYLLRDV 63

Query: 63  YDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGK 122
           YDDM LDGVQPT D+FHS + G+MKGAR  DAFFFR+EMKAMG+ PDV LYN LIS CGK
Sbjct: 64  YDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGK 123

Query: 123 CNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFC 182
           C N +EA+R+ DEM+RY+VKP+ QT++CLLNACAV+G+LD VY IVRDMTAAG+GLN+FC
Sbjct: 124 CKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQFC 183

Query: 183 YTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIPTA 242
           Y GLI AH+NK+P  D+ +TK++EFVE+SK W ++D+S  +AE+VM  +SEEELYNIPTA
Sbjct: 184 YAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIPTA 243

Query: 243 EYVHRRGGFLNRQLTIYHVALHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYL 302
           +Y HR   FL R LT+YHVA  A A+LK+V+  E +++MLKKDGK  D + ++Q+MRCYL
Sbjct: 244 DYSHRT-RFLQRNLTVYHVAFSALADLKDVKATEALLEMLKKDGKDTDTYCMLQIMRCYL 303

Query: 303 HSGDIDRGLKAFEEHLNSGGLPAAELYATLVEGAMIGYTPKGMQLAQETLVNMNSRGFFL 362
           HS D + GLK F++++++  +PA ELY TL+EGAM GYT  GM++AQ+TL+ MN R FFL
Sbjct: 304 HSQDFENGLKLFQDYMSADKIPAMELYTTLIEGAMTGYTDNGMKIAQDTLIQMNERNFFL 363

Query: 363 NPKLGSDLLLAAAGEKTGGYTTANYIWDLLQARKITPSLPAVEAYYNGLKEREIPEEDPR 422
           +P+ GS+LLL AAGEKTGGYT AN IWDL+ AR I P+L AVEAYY GLKEREIPE+DPR
Sbjct: 364 DPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARNILPTLAAVEAYYKGLKEREIPEDDPR 423

Query: 423 LLLVSRTYSNLRVRSG 439
           L+LV+RTY+NLR+R G
Sbjct: 424 LMLVTRTYNNLRLREG 438

[Close]

BLAST of Carg15600 vs. TAIR 10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-22
Identity = 79/308 (25.65%), Postives = 140/308 (45.45%), Query Frame = 0


Query: 30  EYSKRNYADNVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLITGSMKGA 89
           E  KRN   +   Y TV+  + +        ++  +M+  G +P + ++ +LI   ++ +
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466

Query: 90  RFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVKPHSQTYI 149
           RF DA     EMK  G+ PD+  YN LI    K    +EA   L EM    +KP++ TY 
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 150 CLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFATKVVEFVE 209
             ++    A         V++M   G+  NK   TGLI  +  K  V +  +        
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS------AY 586

Query: 210 RSKEWLSVDASSATAENVMMGVSEEELYNIPTAEYVHR--RGGFLNRQLTIYHVALHACA 269
           RS     +   + T   +M G+ + +   +  AE + R  RG  +   +  Y V ++  +
Sbjct: 587 RSMVDQGILGDAKTYTVLMNGLFKND--KVDDAEEIFREMRGKGIAPDVFSYGVLINGFS 646

Query: 270 NLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGGLPAAE 329
            L N++   +I D + ++G TP+V I   ++  +  SG+I++  +  +E    G  P A 
Sbjct: 647 KLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 706

Query: 330 LYATLVEG 336
            Y T+++G
Sbjct: 707 TYCTIIDG 706

[Close]

BLAST of Carg15600 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 6.7e-20
Identity = 79/300 (26.33%), Postives = 125/300 (41.67%), Query Frame = 0


Query: 39  NVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLITGSMKGARFQDAFFFR 98
           N+  YN VI  +  + R   +  V  +M   G       +++LI G  K   F  A    
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333

Query: 99  DEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVKPHSQTYICLLNACAVA 158
            EM   GL P V  Y  LI    K  N   A+  LD+MR   + P+ +TY  L++  +  
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393

Query: 159 GRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFATKVVEFVERSKEWLSVD 218
           G ++  Y ++R+M   G   +   Y  LI  H     + D  A  V+E  +  ++ LS D
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED--AIAVLE--DMKEKGLSPD 453

Query: 219 ASSATAENVMMGVSEEELYNIPTAEYVHR---RGGFLNRQLTIYHVALHACANLKNVEVM 278
             S +   V+ G      Y++  A  V R     G     +T   +    C   +  E  
Sbjct: 454 VVSYS--TVLSGFCRS--YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 513

Query: 279 ETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGGLPAAELYATLVEG 336
           +   +ML+  G  PD F    ++  Y   GD+++ L+   E +  G LP    Y+ L+ G
Sbjct: 514 DLYEEMLRV-GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564

[Close]

BLAST of Carg15600 vs. TAIR 10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-16
Identity = 76/313 (24.28%), Postives = 126/313 (40.26%), Query Frame = 0


Query: 23  SFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLI 82
           +F +  E   +    D VS YNT+I     +++        D+M+  G++P    +  LI
Sbjct: 524 AFRIQKEILGRGCVMDRVS-YNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 583

Query: 83  TGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVK 142
            G     + ++A  F D+ K  G++PDV  Y+++I  C K   +EE     DEM    V+
Sbjct: 584 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 643

Query: 143 PHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFAT 202
           P++  Y  L+ A   +GRL     +  DM   G+  N   YT LI        +      
Sbjct: 644 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG----MSIISRVEE 703

Query: 203 KVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIPTAEYVHRRGGFLNRQLTIYHVA 262
             + F E   E L  +    TA     G   + +        +H +    N+    Y V 
Sbjct: 704 AKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK--ITYTVM 763

Query: 263 LHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGG 322
           +   A   NV     +++ +++ G  PD     + +  YL  G +    K  +E      
Sbjct: 764 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE------ 819

Query: 323 LPAAELYATLVEG 336
               E YA ++EG
Sbjct: 824 ----ENYAAIIEG 819

[Close]

BLAST of Carg15600 vs. TAIR 10
Match: AT4G19440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-16
Identity = 76/313 (24.28%), Postives = 126/313 (40.26%), Query Frame = 0


Query: 23  SFAVSTEEYSKRNYADNVSEYNTVIGSITAQRRYFLLRDVYDDMMLDGVQPTMDVFHSLI 82
           +F +  E   +    D VS YNT+I     +++        D+M+  G++P    +  LI
Sbjct: 524 AFRIQKEILGRGCVMDRVS-YNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 583

Query: 83  TGSMKGARFQDAFFFRDEMKAMGLIPDVTLYNMLISLCGKCNNSEEAVRILDEMRRYEVK 142
            G     + ++A  F D+ K  G++PDV  Y+++I  C K   +EE     DEM    V+
Sbjct: 584 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 643

Query: 143 PHSQTYICLLNACAVAGRLDRVYTIVRDMTAAGLGLNKFCYTGLIAAHMNKKPVADDFAT 202
           P++  Y  L+ A   +GRL     +  DM   G+  N   YT LI        +      
Sbjct: 644 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG----MSIISRVEE 703

Query: 203 KVVEFVERSKEWLSVDASSATAENVMMGVSEEELYNIPTAEYVHRRGGFLNRQLTIYHVA 262
             + F E   E L  +    TA     G   + +        +H +    N+    Y V 
Sbjct: 704 AKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK--ITYTVM 763

Query: 263 LHACANLKNVEVMETIMDMLKKDGKTPDVFIVIQVMRCYLHSGDIDRGLKAFEEHLNSGG 322
           +   A   NV     +++ +++ G  PD     + +  YL  G +    K  +E      
Sbjct: 764 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE------ 819

Query: 323 LPAAELYATLVEG 336
               E YA ++EG
Sbjct: 824 ----ENYAAIIEG 819

The following BLAST results are available for this feature:

BLAST of Carg15600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022703.1	2.8e-254	100.00	Pentatricopeptide repeat-containing protein, mitochondrial [Cucurbita argyrosper...	[more]
XP_022928173.1	8.2e-254	99.78	pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Cucurbita ...	[more]
KAG6588934.1	2.4e-253	99.55	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022989560.1	2.9e-251	98.65	pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Cucurbita ...	[more]
XP_023531734.1	9.3e-250	97.75	pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Cucurbita ...	[more]

BLAST of Carg15600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYR5	1.1e-171	64.45	Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidop...	[more]
Q9FIT7	2.6e-21	25.65	Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop...	[more]
Q9FIX3	9.4e-19	26.33	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
Q940A6	2.8e-15	24.28	Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop...	[more]
P0C894	2.4e-14	24.13	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]

BLAST of Carg15600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN55	4.0e-254	99.78	pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Cucurbit...	[more]
A0A6J1JMQ0	1.4e-251	98.65	pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Cucurbit...	[more]
A0A6J1DFC0	1.6e-239	93.26	pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Momordic...	[more]
A0A5D3D5B2	1.0e-225	89.75	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CMS3	1.0e-225	89.75	pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Cucumis ...	[more]

BLAST of Carg15600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35850.1	7.5e-173	64.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G61990.1	1.9e-22	25.65	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G39710.1	6.7e-20	26.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G19440.1	2.0e-16	24.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G19440.2	2.0e-16	24.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 112..143 e-value: 3.8E-7 score: 27.9 coord: 147..178 e-value: 0.0029 score: 15.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 108..156 e-value: 2.8E-11 score: 43.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 109..143 score: 11.958836
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 28..240 e-value: 1.3E-31 score: 112.2 coord: 242..430 e-value: 1.6E-11 score: 46.1
None	No IPR available	PANTHER	PTHR47801	OS05G0145600 PROTEIN	coord: 8..440

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15600-RA	Carg15600-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding