Carg15592 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15592
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Location	Carg_Chr11: 10997161 .. 11001798 (+)
RNA-Seq Expression	Carg15592
Synteny	Carg15592

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCACTCTTCCTTCTTCCTACTCCTGATAGGTTCTCTGTTTCTCTCTCTCTCTCCATTTCTCTCTCTTCGAGGCACAACAATGGCGACTGGAATCCTGAGGAGGGCAATATCTAGGGTTTCTGCAACTCCACCTTCAAGATTCCTTCGAATTCGAGCTCACGCTTCCGAAGCCGGAGCACAGAAAGTGGAGCAAAAAGCAGCCGTCTCTTCAACGCTCAAGACGTTCGCTATCTACCGATGGAACCCCGACAGCCCTTCCAAACCAGAGCTTAAGGAGTACAAGATCGATCTAAAAGAATGCGGTCCTATGGTGCTCGATGCTCTAATCAAAATCAAGAACGAGATCGATCCGACTCTGACCTTCCGCCGCTCGTGCCGAGAGGGGATCTGCGGGTCCTGTGCGATGAACATCGATGGATGTAATGGTTTGGCTTGCTTGACGAAGATTCCATCCGATGCTTCTTCGACGATTACGCCGCTGCCTCATATGTTCGTGATCAAGGATCTGGTGGTGGATATGACGAATTTTTATAACCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAGCGAGCCGTCTGTGCCGGGGAAGGAGATTCTTCAGAGTAAGCAAGATAGGGCTAAGTTGGATGGGATGTATGAATGTATTTTGTGTGCATGTTGTAGTACATCGTGCCCCAGCTATTGGTGGAACCCGGAGTCATATCTTGGACCAGCTGCTTTGCTCCATGCCAATAGGTAATTTCCCCACTTTTGTTCTTCGTTTATTCTTTGATTCTCTGTTTGTTAGAAATGAATAGAAAACAGGGTCTGTTTAGAGGGATTAAGAAGCTACTTTTGAAGGATGTATATGGGTGTTCATGCTTATTCCTGAACTTTTGGAAGATTCAGAGTCGTATTCATTAAGTTTCATTTTTGTTGGATTGAAAGTTGGCAGCAATAGTTTGGTAATTTAGGTACTCTATTCGAGGGCTTAAGTGCGTTTTGAGGAGCTAGAAAACGTGTTAATCAAAATCATTTAAATGGTCTTTTATTGAAGACTTCAAAGGGAAAGAAACTTAACAACGAATGAAGAGAGCTTATCAAAAGAAGGGAAATTTTGTATATGGAAATGAGAGGAGGAAGAACAGTCATGTGGGTATCAAAAGGAATTGAAGAAACTGGAGAACTTATTGAGGTGTGTTCAGATCCCATTTGTGGGCCTGGAGGTTGGGCACAGTATATGTCGAGGTGTGTGTAGGTCGGGGATCGTTCTTAGTACGGTCCTACAATTAGCATATTTGAACAGCCCTTCCGGTACTAAGAAACCCAGTAGTTTCCTATTTCACACAACTCGTGCCTCATCAAGGATTAGTCTGGTTATGTCCTCTCAGTTCTTGGAAGGTGCTTCCCTTCTCCTGCTTGGAAAATAAGCCCTTGCGTGGTAGGATGTTTATGATTTGATCGGTTGTCTATTGTATAGAGAATCAAGTAATTTTATTTGGTTGTTTTATCTATGTTCAGCAAAGACTTGGATTCCTTGGTAGACTTAATCTGAAACTCATTTGTTTGCTTTTAGTTTCTTGGTGGGTTTGAACAGGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGTATATGTGTTTAAAACCTTGGGGGAAGCCTCTCTAGCATACATGTTTTAAAACCTTGAGGCTGTATATGTGTTTAAAACCTTGGGGGAAGCCTCCCTAGCATACATGTTTTAAAACCTTGAGGGGAAGCCTGGAAGGGTAAGCCCAAAAAAGACAATTTCTACTAGTGGTGGGCTTGAGTTGTTTTATTAGTACTTACGTTTTAACAGTTCAATTAGTAGAGTGTGGAGGATGTCTGAAAAGTTTTTGCTGATATCACATAAAAGAGTTGTTGATCCACAACAATTACGCTAGAACATGATAGTAAGCTTTATTCGTGACGTCTGGAAGCCAAATTTTGAATATGATATGCTTCCTACAACAATCAAGGGCGCAGCTTTTTACAGATGACAACTCAAGAGACTTTTCTTTGACAACGTCCTACTATTGAGGATTGTTGGGAGAGGAGTCCCACATCGGTTAATTAAGAGGTTGATCATGGGTTTATAAGTAAGGAATACATCTCCGTTGGTATGAGTCTTTTTGGAGAAATCTGAAGTAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCACGAGAGCTTAATGGTGAAGTTTTACGGTTGCCTAAAATATCTTTGTTCTCATATATAATTCATCCCTTCATAATTTTTGTTTGTTTTTCTCAAGATTTCACAAGTTCATGTGGTGTCTTATGTAATTGCATGATTTATTTGTTCCTTTCTTTCACCTCACAACTTCCTATCTATAACCATTGCATTGCAAAAAGATTGACACAGATGACTAATGGCTATGATTAAATTGATTACAAACTCAGTTTACCGTTAATTTTTTTCCTCTTTTTTAAATTTTTATCAAGGACACAATTTTTTAATTACAAAACTGTCCCCATTTCTCCCCTTTGTACATGCAGGTGGATAAGTGATAGCCGTGACGAATTCACCAAGGAGCGACTCGAGGCAATAAACGATGAATTCAAGCTCTATCGGTGTCATACCATACTCAACTGCGCCCGTGCCTGTCCGAAGGGTTTGAACCCTGGAAAACAGATTCAAAATATCAAACGCCTCCAGCTCGTGGGCTGAGCCGAAGTTTCGAGGTACACGAAACACAATAATGTTCTTTTTCATTCAGTTATGGAATATCTTGTGAGAACTCATGAGCAATGTGATTTTGATCGAATAACTTGTGGATCATTGACTTTCCACACATTCTGTACTTAAGATTTGATCTTTAGTATTTATCTGTCTCCAAATAAATGTTGACAGAAACCTCCTGGCTTCTCGAGTTGTCGTACCACGATCATCCTATATTCTTTTTATTTGATAAAAAAACTATGCTCCGATTTCCTGGTTCGTTCGATCACCTTCCTTTGTCTTAACTGCTATAGTTTAACCATCCATCTTGTAACGGCCCAGGCCCACTACTAGCAGATATTATCCTCTTTCGGCTTTTCCTTTCAACCGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTATCCTCCCCAATCGATGTGGGATCTCACAATCCACCCCCCTTTAGGGTCCAACGTCCTCGTTGACACTTGTTTCTTTTTCAAATTGATGTGGGACCCCCCTCCACCCCCTTCGAGGCTATGCGTCCTTGCTAACACACCGCCTCGTGTCTACCCCCCTTCGGGGAACAGCCTCCTTGCTGGCACATCGATCGGTTTTGACTGATACCAATTGTAACGGCTCAAGCCCACTGTTCTCTGATATTGTCCTCTTTTGGGCTTTCTTTTCCAGGCTTTCCCTCGAGGCTTGGGCTTTCCTTTCCAGGCTTTCCCTCGAGGCTTTTTAGACGCATCTGTTAGAGAGAGGTTTCCACACCCTTATAAAGGGTGTTTCGTTTTCCTCCCCAATCGACGTGGGATCTCACACATCTGTTCATTTTTCTTTTATATCCGATCTTTTATACATATGAAGAGTATCACTGTTTCTACATGGTATTAGAGAATTATTCAACCAAAAATTTCGTCTTTTCTTTTACCTCTTTCATTCGTTCCAGCAAAAAAGCTTGCTCTGTTTCAATGGGCGCACCACTATGTCTTCTTCCATTTCATCCTCTCTATTCCCGTTGTCTATTATTTGTAATATCTATTCCCGTTGTCTAATATTTGTAATCTTGTGCTGCTTTACTTGGATTCAACAAATTATGTGTTGTGGAAGTTCCCGATTTGTTCGTTCACTCTATCAAGCTCTCGTGACTTTGATCAAGAGCTGAAAATTGGTTAAAATTGATCCAACCCGACCAACCCAAGATCGAATGGTTCGGTTTTGAACCGATTAACGACTCTTGTCTCAAAGAGGAAAAAAGTTTCAATGTTAACACTCGTGGAATTTGACTCTAAAATGGTCCGAACCCAAAAATGAAAGTGTTCAAGTTTCGTAACAACTTTTTTGGACGAGTTAACAACCTAAAATTTGACTCCAAAATGACTAAAAATGAGAGTGTTTAAGTTTCGTATTTTAACCTAGAAAATGTTTAAGTTTCGAATTTTAACAGAACATATGTGTCAAATTCATCAAACTTGAGCGTTCCTTACAGTTTTGTTGAATTAACCCAACCCACCCAACTCATTACAGTTTCGTTGAATTAACCCAACTCAAAATTAACCCAACTCATTACCCAACTCAAAATTAACCCAACTCATTACGTTGAATTAACCCAAAGGTTGAGTTTGATTCATAATTTAATTAGGGTTGTCTCGTTTGAAAAAAATTATACTCAAATTAATGACAATTATTTTTTAAAAGTGTTAAACAAGTATTAATTTCTCGTTTTGTAGCAATAATTATAACAATATTGGTATTATTAATTTAAATATAAATGGAAAAAGGCGTGTGAATGGAATATTACCTCTAAAGCATTTATATAATAGAGCATTATTGATTCTGAAAGCGAATCGAGACTGCCACGTCATCACATACGTCGCCCATCATGAACGGTCCAGATTCAACGAGGTTGA

mRNA sequence

AAGCCACTCTTCCTTCTTCCTACTCCTGATAGGTTCTCTGTTTCTCTCTCTCTCTCCATTTCTCTCTCTTCGAGGCACAACAATGGCGACTGGAATCCTGAGGAGGGCAATATCTAGGGTTTCTGCAACTCCACCTTCAAGATTCCTTCGAATTCGAGCTCACGCTTCCGAAGCCGGAGCACAGAAAGTGGAGCAAAAAGCAGCCGTCTCTTCAACGCTCAAGACGTTCGCTATCTACCGATGGAACCCCGACAGCCCTTCCAAACCAGAGCTTAAGGAGTACAAGATCGATCTAAAAGAATGCGGTCCTATGGTGCTCGATGCTCTAATCAAAATCAAGAACGAGATCGATCCGACTCTGACCTTCCGCCGCTCGTGCCGAGAGGGGATCTGCGGGTCCTGTGCGATGAACATCGATGGATGTAATGGTTTGGCTTGCTTGACGAAGATTCCATCCGATGCTTCTTCGACGATTACGCCGCTGCCTCATATGTTCGTGATCAAGGATCTGGTGGTGGATATGACGAATTTTTATAACCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAGCGAGCCGTCTGTGCCGGGGAAGGAGATTCTTCAGAGTAAGCAAGATAGGGCTAAGTTGGATGGGATGTATGAATGTATTTTGTGTGCATGTTGTAGTACATCGTGCCCCAGCTATTGGTGGAACCCGGAGTCATATCTTGGACCAGCTGCTTTGCTCCATGCCAATAGGTGGATAAGTGATAGCCGTGACGAATTCACCAAGGAGCGACTCGAGGCAATAAACGATGAATTCAAGCTCTATCGGTGTCATACCATACTCAACTGCGCCCGTGCCTGTCCGAAGGGTTTGAACCCTGGAAAACAGATTCAAAATATCAAACGCCTCCAGCTCATTCAACGAGGTTGA

Coding sequence (CDS)

ATGGCGACTGGAATCCTGAGGAGGGCAATATCTAGGGTTTCTGCAACTCCACCTTCAAGATTCCTTCGAATTCGAGCTCACGCTTCCGAAGCCGGAGCACAGAAAGTGGAGCAAAAAGCAGCCGTCTCTTCAACGCTCAAGACGTTCGCTATCTACCGATGGAACCCCGACAGCCCTTCCAAACCAGAGCTTAAGGAGTACAAGATCGATCTAAAAGAATGCGGTCCTATGGTGCTCGATGCTCTAATCAAAATCAAGAACGAGATCGATCCGACTCTGACCTTCCGCCGCTCGTGCCGAGAGGGGATCTGCGGGTCCTGTGCGATGAACATCGATGGATGTAATGGTTTGGCTTGCTTGACGAAGATTCCATCCGATGCTTCTTCGACGATTACGCCGCTGCCTCATATGTTCGTGATCAAGGATCTGGTGGTGGATATGACGAATTTTTATAACCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAGCGAGCCGTCTGTGCCGGGGAAGGAGATTCTTCAGAGTAAGCAAGATAGGGCTAAGTTGGATGGGATGTATGAATGTATTTTGTGTGCATGTTGTAGTACATCGTGCCCCAGCTATTGGTGGAACCCGGAGTCATATCTTGGACCAGCTGCTTTGCTCCATGCCAATAGGTGGATAAGTGATAGCCGTGACGAATTCACCAAGGAGCGACTCGAGGCAATAAACGATGAATTCAAGCTCTATCGGTGTCATACCATACTCAACTGCGCCCGTGCCTGTCCGAAGGGTTTGAACCCTGGAAAACAGATTCAAAATATCAAACGCCTCCAGCTCATTCAACGAGGTTGA

Protein sequence

MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPSKPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLIQRG

Homology

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BLAST of Carg15592 vs. NCBI nr
Match: KAG7022695.1 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 577.8 bits (1488), Expect = 5.1e-161
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD
Sbjct: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLIQRG 280
           EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLIQRG
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLIQRG 279

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BLAST of Carg15592 vs. NCBI nr
Match: KAG6588927.1 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 571.6 bits (1472), Expect = 3.6e-159
Identity = 275/276 (99.64%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD
Sbjct: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLV 276

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BLAST of Carg15592 vs. NCBI nr
Match: XP_023530873.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 570.5 bits (1469), Expect = 8.1e-159
Identity = 274/276 (99.28%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPELKEYKIDLK+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELKEYKIDLKDCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD
Sbjct: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLV 276

[Close]

BLAST of Carg15592 vs. NCBI nr
Match: XP_022928182.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 568.2 bits (1463), Expect = 4.0e-158
Identity = 273/276 (98.91%), Postives = 275/276 (99.64%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPSD SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD
Sbjct: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLV 276

[Close]

BLAST of Carg15592 vs. NCBI nr
Match: XP_022989559.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 565.5 bits (1456), Expect = 2.6e-157
Identity = 272/276 (98.55%), Postives = 275/276 (99.64%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVSAT PSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRAISRVSATSPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPELKEYKIDLK+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELKEYKIDLKDCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD
Sbjct: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQ+IKRLQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQHIKRLQLV 276

[Close]

BLAST of Carg15592 vs. ExPASy Swiss-Prot
Match: Q8LB02 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 451.8 bits (1161), Expect = 5.5e-126
Identity = 216/277 (77.98%), Postives = 242/277 (87.36%), Query Frame = 0


Query: 1   MATGILRRAISRVSA--TPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDS 60
           MA G++ R +   S+  +  +R +  R  ++ + AQ         ++LKTF IYRWNPD+
Sbjct: 1   MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60

Query: 61  PSKPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLA 120
           P KPEL++YKIDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGLA
Sbjct: 61  PGKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLA 120

Query: 121 CLTKIPSDA-SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQS 180
           CLTKI S +  +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVPGKEILQS
Sbjct: 121 CLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQS 180

Query: 181 KQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEA 240
           K+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEA
Sbjct: 181 KKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEA 240

Query: 241 INDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           I+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ
Sbjct: 241 IDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 277

[Close]

BLAST of Carg15592 vs. ExPASy Swiss-Prot
Match: Q8LBZ7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 448.7 bits (1153), Expect = 4.7e-125
Identity = 216/278 (77.70%), Postives = 238/278 (85.61%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQ---KVEQKAAVSSTLKTFAIYRWNPD 60
           MA+G++ R +    +   +    I A  +  GA+   K        S LKTF IYRWNPD
Sbjct: 1   MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60

Query: 61  SPSKPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGL 120
           +P KPEL+ Y+IDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGL
Sbjct: 61  NPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query: 121 ACLTKIPSDAS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 180
           ACLTKI  +AS +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVP KEILQ
Sbjct: 121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query: 181 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 240
           SK+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           AI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ
Sbjct: 241 AIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278

[Close]

BLAST of Carg15592 vs. ExPASy Swiss-Prot
Match: Q9S827 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH2-1 PE=1 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 6.8e-116
Identity = 204/279 (73.12%), Postives = 227/279 (81.36%), Query Frame = 0


Query: 2   ATGILRR---AISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDS 61
           A  +LRR   A + +S    SR +  + H+S         KA  ++  KTF+IYRW+PDS
Sbjct: 3   AAALLRRSPAARALLSPALSSRLVASKPHSSSPAPPPPPSKAGANT--KTFSIYRWDPDS 62

Query: 62  PS-KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGL 121
           PS KP LK+YK+DL +CGPMVLD L+KIKNE DP+LTFRRSCREGICGSCAMNIDG NGL
Sbjct: 63  PSTKPHLKDYKVDLSDCGPMVLDVLLKIKNEQDPSLTFRRSCREGICGSCAMNIDGDNGL 122

Query: 122 ACLTKIPSDAS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 181
           ACLTKI S +S STI+PLPHMFVIKDLVVDMTNFYNQYKS+EPWLKRK  P  PGKEI Q
Sbjct: 123 ACLTKISSASSASTISPLPHMFVIKDLVVDMTNFYNQYKSVEPWLKRKDAPPQPGKEIPQ 182

Query: 182 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 241
           +K DRAKLDGMYECILCACCSTSCPSYWWNPE YLGPAALLHANRWI DSRD+FTKERL+
Sbjct: 183 TKADRAKLDGMYECILCACCSTSCPSYWWNPEEYLGPAALLHANRWIQDSRDQFTKERLD 242

Query: 242 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQL 276
           +INDEFKLYRCHTI NC  ACPKGLNP K I  IK+LQL
Sbjct: 243 SINDEFKLYRCHTIKNCTHACPKGLNPAKHIDTIKKLQL 279

[Close]

BLAST of Carg15592 vs. ExPASy Swiss-Prot
Match: Q9YHT2 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus OX=9031 GN=SDHB PE=1 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 7.3e-94
Identity = 167/268 (62.31%), Postives = 198/268 (73.88%), Query Frame = 0


Query: 18  PSRFLRI---------RAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSP-SKPELKEY 77
           P+RFLR            H    GAQ     AA +S +K F+IYRW+PD P  KP ++ Y
Sbjct: 15  PARFLRAGLRPVRGLEAVHGICRGAQTA---AAATSRIKKFSIYRWDPDKPGDKPRMQTY 74

Query: 78  KIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSDA 137
           ++DL +CGPMVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G N LAC  KI  D 
Sbjct: 75  EVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDL 134

Query: 138 SST--ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQDRAKLD 197
           S T  I PLPHM+V+KDLV D++NFY QYKSIEP+LK+K E     ++ LQS +DR KLD
Sbjct: 135 SKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLD 194

Query: 198 GMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAINDEFKLY 257
           G+YECILCACCSTSCPSYWWN + YLGPA L+ A RW+ DSRD++T+ERL  + D F LY
Sbjct: 195 GLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLY 254

Query: 258 RCHTILNCARACPKGLNPGKQIQNIKRL 274
           RCHTI+NC R CPKGLNPGK I  IK++
Sbjct: 255 RCHTIMNCTRTCPKGLNPGKAIAEIKKM 279

[Close]

BLAST of Carg15592 vs. ExPASy Swiss-Prot
Match: P21913 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhb PE=2 SV=2)

HSP 1 Score: 345.1 bits (884), Expect = 7.3e-94
Identity = 160/243 (65.84%), Postives = 192/243 (79.01%), Query Frame = 0


Query: 34  QKVEQKAAVSSTLKTFAIYRWNPD-SPSKPELKEYKIDLKECGPMVLDALIKIKNEIDPT 93
           ++ +  AA +  +KTFAIYRW+PD +  KP ++ YK+DL +CGPMVLDALIKIKNEID T
Sbjct: 29  REAQTAAAAAPRIKTFAIYRWDPDKAGDKPRMQTYKVDLNKCGPMVLDALIKIKNEIDST 88

Query: 94  LTFRRSCREGICGSCAMNIDGCNGLACLTKIPSDAS--STITPLPHMFVIKDLVVDMTNF 153
           LTFRRSCREGICGSCAMNI+G N LAC  +I +D    S I PLPHM+VIKDLV D++NF
Sbjct: 89  LTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLGKVSKIYPLPHMYVIKDLVPDLSNF 148

Query: 154 YNQYKSIEPWLKRKSEPSVPGKEILQSKQDRAKLDGMYECILCACCSTSCPSYWWNPESY 213
           Y QYKSIEP+LK+K E     ++ LQS +DR KLDG+YECILCACCSTSCPSYWWN + Y
Sbjct: 149 YAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKY 208

Query: 214 LGPAALLHANRWISDSRDEFTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNI 273
           LGPA L+ A RW+ DSRDEFT+ERL  + D F LYRCHTI+NC + CPKGLNPGK I  I
Sbjct: 209 LGPAVLMQAYRWMIDSRDEFTEERLAKLQDPFSLYRCHTIMNCTQTCPKGLNPGKAIAEI 268

[Close]

BLAST of Carg15592 vs. ExPASy TrEMBL
Match: A0A6J1EJ68 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111435079 PE=3 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.0e-158
Identity = 273/276 (98.91%), Postives = 275/276 (99.64%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELEEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPSD SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD
Sbjct: 121 TKIPSDPSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLV 276

[Close]

BLAST of Carg15592 vs. ExPASy TrEMBL
Match: A0A6J1JPN7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111486619 PE=3 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.3e-157
Identity = 272/276 (98.55%), Postives = 275/276 (99.64%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATGILRRAISRVSAT PSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS
Sbjct: 1   MATGILRRAISRVSATSPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPELKEYKIDLK+CGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELKEYKIDLKDCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD
Sbjct: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQ+IKRLQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQHIKRLQLV 276

[Close]

BLAST of Carg15592 vs. ExPASy TrEMBL
Match: A0A6J1J748 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111481863 PE=3 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.0e-151
Identity = 258/276 (93.48%), Postives = 270/276 (97.83%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MA+GILRRAI+RVSATPPSRF+RIRAHA+ A AQ+VEQKAA S+ LKTFAIYRWNPDSPS
Sbjct: 1   MASGILRRAIARVSATPPSRFVRIRAHAAAAEAQQVEQKAAASTNLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQEYKIDLKECGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS ASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEP VPGKEILQSK+D
Sbjct: 121 TKIPSGASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPPVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQNIK+LQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKQLQLV 276

[Close]

BLAST of Carg15592 vs. ExPASy TrEMBL
Match: A0A6J1F9C7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111441997 PE=3 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.1e-150
Identity = 258/276 (93.48%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MA+GILRRAI+RVSAT PSRF+RIRAHAS A AQ+VEQKAA S+ LKTFAIYRWNPDSPS
Sbjct: 1   MASGILRRAIARVSATSPSRFVRIRAHASAAEAQQVEQKAAASTNLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQEYKIDLKECGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS ASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEP VPGKEILQSK+D
Sbjct: 121 TKIPSGASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPPVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQNIK+LQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKQLQLV 276

[Close]

BLAST of Carg15592 vs. ExPASy TrEMBL
Match: A0A6J1DJI7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021478 PE=3 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.0e-150
Identity = 259/276 (93.84%), Postives = 268/276 (97.10%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDSPS 60
           MATG+LRR ISRVSATP SRF+RIRAHASEA AQ+VEQKAA +S LKTFAIYRWNPDSPS
Sbjct: 1   MATGMLRRTISRVSATPFSRFVRIRAHASEAQAQQVEQKAAAASNLKTFAIYRWNPDSPS 60

Query: 61  KPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACL 120
           KPEL+EYKIDLKECGPMVLDALIKIKNEIDP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61  KPELQEYKIDLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 121 TKIPSDASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQSKQD 180
           TKIPS ASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKS PSVPGKEILQSK+D
Sbjct: 121 TKIPSGASSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSAPSVPGKEILQSKKD 180

Query: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEAIND 240
           RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEAIND
Sbjct: 181 RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIND 240

Query: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQLI 277
           EFKLYRCHTILNCARACPKGLNPGKQIQNIK LQL+
Sbjct: 241 EFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLV 276

[Close]

BLAST of Carg15592 vs. TAIR 10
Match: AT5G40650.1 (succinate dehydrogenase 2-2 )

HSP 1 Score: 451.8 bits (1161), Expect = 3.9e-127
Identity = 216/277 (77.98%), Postives = 242/277 (87.36%), Query Frame = 0


Query: 1   MATGILRRAISRVSA--TPPSRFLRIRAHASEAGAQKVEQKAAVSSTLKTFAIYRWNPDS 60
           MA G++ R +   S+  +  +R +  R  ++ + AQ         ++LKTF IYRWNPD+
Sbjct: 1   MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60

Query: 61  PSKPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLA 120
           P KPEL++YKIDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGLA
Sbjct: 61  PGKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLA 120

Query: 121 CLTKIPSDA-SSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQS 180
           CLTKI S +  +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVPGKEILQS
Sbjct: 121 CLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQS 180

Query: 181 KQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLEA 240
           K+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLEA
Sbjct: 181 KKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEA 240

Query: 241 INDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           I+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ
Sbjct: 241 IDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 277

[Close]

BLAST of Carg15592 vs. TAIR 10
Match: AT3G27380.1 (succinate dehydrogenase 2-1 )

HSP 1 Score: 448.7 bits (1153), Expect = 3.3e-126
Identity = 216/278 (77.70%), Postives = 238/278 (85.61%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQ---KVEQKAAVSSTLKTFAIYRWNPD 60
           MA+G++ R +    +   +    I A  +  GA+   K        S LKTF IYRWNPD
Sbjct: 1   MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60

Query: 61  SPSKPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGL 120
           +P KPEL+ Y+IDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGL
Sbjct: 61  NPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query: 121 ACLTKIPSDAS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 180
           ACLTKI  +AS +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVP KEILQ
Sbjct: 121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query: 181 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 240
           SK+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           AI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ
Sbjct: 241 AIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278

[Close]

BLAST of Carg15592 vs. TAIR 10
Match: AT3G27380.2 (succinate dehydrogenase 2-1 )

HSP 1 Score: 448.7 bits (1153), Expect = 3.3e-126
Identity = 216/278 (77.70%), Postives = 238/278 (85.61%), Query Frame = 0


Query: 1   MATGILRRAISRVSATPPSRFLRIRAHASEAGAQ---KVEQKAAVSSTLKTFAIYRWNPD 60
           MA+G++ R +    +   +    I A  +  GA+   K        S LKTF IYRWNPD
Sbjct: 1   MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60

Query: 61  SPSKPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGL 120
           +P KPEL+ Y+IDLK+CGPMVLDALIKIKNE+DP+LTFRRSCREGICGSCAMNIDGCNGL
Sbjct: 61  NPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query: 121 ACLTKIPSDAS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPSVPGKEILQ 180
           ACLTKI  +AS +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+  SVP KEILQ
Sbjct: 121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query: 181 SKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEFTKERLE 240
           SK+DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDE+TKERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query: 241 AINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKRLQ 275
           AI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ
Sbjct: 241 AIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278

[Close]

BLAST of Carg15592 vs. TAIR 10
Match: AT5G65165.1 (succinate dehydrogenase 2-3 )

HSP 1 Score: 315.5 bits (807), Expect = 4.4e-86
Identity = 152/244 (62.30%), Postives = 180/244 (73.77%), Query Frame = 0


Query: 37  EQKAAVSSTLKTFAIYRWNPDSP-SKPELKEYKIDLKECGPMVLDALIKIKNEIDPTLTF 96
           E++       K F IYRWNPD P SKP L+ + +DL  CGPMVLD L KIK E D +L++
Sbjct: 57  EKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVDLSSCGPMVLDVLQKIKAEDDASLSY 116

Query: 97  RRSCREGICGSCAMNIDGCNGLACLTKIPSDAS--STITPLPHMFVIKDLVVDMTNFYNQ 156
           RRSCREGICGSC+MNIDG N +ACL  I  + S  + ITPLPHM+VIKDLVVD+TNFY Q
Sbjct: 117 RRSCREGICGSCSMNIDGTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQ 176

Query: 157 YKSIEPWLKRKSEPSVPGKEILQSKQDRAKLDGMYECILCACCSTSCPSYWWNPESYLGP 216
           YKS+EPWLK +  P   G+E  QS +DR KLDG+YECILCACC+TSCPSYWWNPE + GP
Sbjct: 177 YKSMEPWLKTRKPPK-DGREHRQSPKDRKKLDGLYECILCACCTTSCPSYWWNPEEFPGP 236

Query: 217 AALLHANRWISDSRDEFTKERLEAIND-EFKLYRCHTILNCARACPKGLNPGKQIQNIKR 276
           AALL A RWISDSRDE+ +ERL+AI + E K+YRC  I NC   CPKGLNP   I  +K 
Sbjct: 237 AALLQAYRWISDSRDEYREERLQAITESETKVYRCRAIKNCTATCPKGLNPASAILKMKS 296

The following BLAST results are available for this feature:

BLAST of Carg15592 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022695.1	5.1e-161	100.00	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Cucur...	[more]
KAG6588927.1	3.6e-159	99.64	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial, parti...	[more]
XP_023530873.1	8.1e-159	99.28	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [...	[more]
XP_022928182.1	4.0e-158	98.91	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [...	[more]
XP_022989559.1	2.6e-157	98.55	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [...	[more]

BLAST of Carg15592 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB02	5.5e-126	77.98	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ara...	[more]
Q8LBZ7	4.7e-125	77.70	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ara...	[more]
Q9S827	6.8e-116	73.12	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ory...	[more]
Q9YHT2	7.3e-94	62.31	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallu...	[more]
P21913	7.3e-94	65.84	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattu...	[more]

BLAST of Carg15592 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ68	2.0e-158	98.91	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1JPN7	1.3e-157	98.55	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1J748	3.0e-151	93.48	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1F9C7	1.1e-150	93.48	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1DJI7	2.0e-150	93.84	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Momor...	[more]

BLAST of Carg15592 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40650.1	3.9e-127	77.98	succinate dehydrogenase 2-2	[more]
AT3G27380.1	3.3e-126	77.70	succinate dehydrogenase 2-1	[more]
AT3G27380.2	3.3e-126	77.70	succinate dehydrogenase 2-1	[more]
AT5G65165.1	4.4e-86	62.30	succinate dehydrogenase 2-3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13534	Fer4_17	coord: 189..262 e-value: 1.9E-9 score: 38.0
None	No IPR available	PANTHER	PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	coord: 9..274
None	No IPR available	PANTHER	PTHR11921:SF44	SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIAL	coord: 9..274
None	No IPR available	SUPERFAMILY	46548	alpha-helical ferredoxin	coord: 147..274
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	TIGRFAM	TIGR00384	TIGR00384	coord: 51..271 e-value: 2.2E-83 score: 277.0
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal	PFAM	PF13085	Fer2_3	coord: 48..151 e-value: 4.8E-32 score: 110.2
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 37..146 e-value: 3.9E-40 score: 138.2
IPR009051	Alpha-helical ferredoxin	GENE3D	1.10.1060.10		coord: 147..278 e-value: 1.0E-52 score: 179.4
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 99..107
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 190..201
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 60..137 score: 9.535151
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 62..112 e-value: 0.00651541 score: 33.1372
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROSITE	PS51379	4FE4S_FER_2	coord: 180..210 score: 7.894782
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 45..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15592-RA	Carg15592-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045273	respiratory chain complex II
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0051538	3 iron, 4 sulfur cluster binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity