Carg15557 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15557
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 10816009 .. 10816411 (+)
RNA-Seq ExpressionCarg15557
SyntenyCarg15557
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACGGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAGCCTGTATGGAATTGTCGCCGATGAAGGTATCGATGTAAAGGCTGCAAACTATATTTCCTCCACTCTAGCACGGTTCAAAAGTTTGAATGAGTTAACTCCGATAGAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAATGACTTGTTGAGTACTCGTCTTTGTATGTTTGTATTGTTATTCTTAGTTAATAATTTAGTTGACTTGAGCATAGCTCACGAATGGCAGATT

mRNA sequence

ATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACGGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAGCCTGTATGGAATTGTCGCCGATGAAGGTATCGATAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAATGACTTGTTGAGTACTCGTCTTTGTATGTTTGTATTGTTATTCTTAGTTAATAATTTAGTTGACTTGAGCATAGCTCACGAATGGCAGATT

Coding sequence (CDS)

ATGCCTTTCTACAAGCAATACAAAGGGACCAAAACAAAGCCAACTGGTTTGGTTGGCTATGTCTTCCACCGGGACTATGCTATTTCTCCACACAACGTTGCTTTGTTGGTGCACGAGAACCCCGGCCCCGACACGGCGGTGACTCGGGACTCCTTGACTCAGTTCGATAGCCTGTATGGAATTGTCGCCGATGAAGGTATCGATAAATACTGTCTCCTCCGTTGGCTCGTCGTGAGATTTAATGACTTGTTGAGTACTCGTCTTTGTATGTTTGTATTGTTATTCTTAGTTAATAATTTAGTTGACTTGAGCATAGCTCACGAATGGCAGATT

Protein sequence

MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDSLYGIVADEGIDKYCLLRWLVVRFNDLLSTRLCMFVLLFLVNNLVDLSIAHEWQI
Homology
BLAST of Carg15557 vs. NCBI nr
Match: KAG7022660.1 (hypothetical protein SDJN02_16394, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.1 bits (588), Expect = 4.6e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDSLYG 60
           MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDSLYG
Sbjct: 1   MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDSLYG 60

Query: 61  IVADEGIDKYCLLRWLVVRFNDLLSTRLCMFVLLFLVNNLVDLSIAHEWQI 112
           IVADEGIDKYCLLRWLVVRFNDLLSTRLCMFVLLFLVNNLVDLSIAHEWQI
Sbjct: 61  IVADEGIDKYCLLRWLVVRFNDLLSTRLCMFVLLFLVNNLVDLSIAHEWQI 111

BLAST of Carg15557 vs. NCBI nr
Match: KAG6588895.1 (hypothetical protein SDJN03_17460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDSLYG 60
          MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFD+LYG
Sbjct: 1  MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDNLYG 60

Query: 61 IVADEGID 69
          IVADEGID
Sbjct: 61 IVADEGID 68

BLAST of Carg15557 vs. NCBI nr
Match: KAA0042928.1 (hypothetical protein E6C27_scaffold44G004520 [Cucumis melo var. makuwa] >TYK05327.1 hypothetical protein E5676_scaffold108G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.0e-17
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1  MPFYKQYKGTKTKPTGLVGYVFHRD---YAISPHNVALLVHENPGPDTAVTRDSLTQFDS 60
          MPFYKQY G+KTK TGLVGYVFHR+      S HN+ALLV +NP  DT  TR SL+Q D 
Sbjct: 17 MPFYKQYNGSKTKQTGLVGYVFHRECYSSVSSQHNIALLVQDNPSRDTTATRGSLSQSDH 76

Query: 61 LYGIVADEGID 69
           YGIVADEG+D
Sbjct: 77 SYGIVADEGVD 87

BLAST of Carg15557 vs. NCBI nr
Match: KAE8650773.1 (hypothetical protein Csa_017653 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-07
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 0

Query: 1   MPFYKQYKGTKTKPTGLVGYVFHRDYAISPHNVALLVHENPGPDTAVTRDSLTQFDSLYG 60
           MPFYKQY G+KTK TGL                     ++PG DT  TRDSL+QFD  YG
Sbjct: 17  MPFYKQYNGSKTKQTGL---------------------DDPGRDTTATRDSLSQFDRSYG 76

Query: 61  IVADEGIDKYCLLRWLVVRFNDLLSTRLCMFVLLFLVNNLVDLS 105
           I+ADEG+D         V+  + +S+ L  F  L  + + ++LS
Sbjct: 77  IIADEGVD---------VKAANYISSTLARFKSLNELPHPIELS 90

BLAST of Carg15557 vs. ExPASy TrEMBL
Match: A0A0A0LVE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097750 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 0

Query: 1   MPFYKQYKGTKTKPTGLVGYVFHRD--YAISPHNVALLVHENPGPDTAVTRDSLTQFDSL 60
           MPFYKQY G+KTK TGLVGYVFHR+   ++S HN+ LLV ++PG DT  TRDSL+QFD  
Sbjct: 17  MPFYKQYNGSKTKQTGLVGYVFHRECYSSVSQHNIGLLVQDDPGRDTTATRDSLSQFDRS 76

Query: 61  YGIVADEGIDKYCLLRWLVVRFNDLLSTRLCMFVLLFLVNNLVDLS 105
           YGI+ADEG+D         V+  + +S+ L  F  L  + + ++LS
Sbjct: 77  YGIIADEGVD---------VKAANYISSTLARFKSLNELPHPIELS 113

BLAST of Carg15557 vs. ExPASy TrEMBL
Match: A0A5D3C0J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001540 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.9e-17
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1  MPFYKQYKGTKTKPTGLVGYVFHRD---YAISPHNVALLVHENPGPDTAVTRDSLTQFDS 60
          MPFYKQY G+KTK TGLVGYVFHR+      S HN+ALLV +NP  DT  TR SL+Q D 
Sbjct: 17 MPFYKQYNGSKTKQTGLVGYVFHRECYSSVSSQHNIALLVQDNPSRDTTATRGSLSQSDH 76

Query: 61 LYGIVADEGID 69
           YGIVADEG+D
Sbjct: 77 SYGIVADEGVD 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7022660.14.6e-57100.00hypothetical protein SDJN02_16394, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588895.12.6e-3198.53hypothetical protein SDJN03_17460, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0042928.18.0e-1766.20hypothetical protein E6C27_scaffold44G004520 [Cucumis melo var. makuwa] >TYK0532... [more]
KAE8650773.13.4e-0739.42hypothetical protein Csa_017653 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LVE71.6e-1850.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097750 PE=4 SV=1[more]
A0A5D3C0J63.9e-1766.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15557-RACarg15557-RAmRNA