Carg15539 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15539
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 10700152 .. 10702919 (+)
RNA-Seq ExpressionCarg15539
SyntenyCarg15539
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGTGCGGATTCGCCAAGTTTCTTGTGTCAGCTGCTCTTGCTGGTGCTCCTGCATGGGATTTCAGACGTACTCTTTATGAAAAAAAAGTAACCCAAATTGAAGCAAAACTCTCTGTTTGAGAGTCGAGACAAGCTTGGGAGATTTACTGTTGATCACTTCCAAGGATTGCGTAGTGTATCAGCTGCAACATTGACAAACCAATTATTAATTGAATATTGGTTGATGGGGTTAGATCTTCTTTTCCCTATGAACCATTTACTAATTTGAATTCTCTCTTTCATCTTGTTCAAGATTATTGCCTTGAAAGTTGTGGGAAATGCCATTACTTGCTGCTTTAAATAGATGTGCATTCACATGGAAAATACCAGAGCCTCGCGTACTTGCTAATGAATTCTTCTGAAATTGACATGACAGGTCCACTTCAGGAGCTTGCGCACCAGAACTTACAGGTTTTATTTCTTTACATCTTCATCTGTCTTCTTCAATGTTGTGGCGTGCAGAATTTTATCATCGTTTTAATAAGATCATCATCTCTTCAAAGATTCTAAAACCTCTGCTGCAAGAAACCAACTTTTGCTTACCCATTCAACTATTTCTCTTTAGACTTCCACTTTACTGTTCTGCTGCTTAGGGAATCTGACGTCGTTTTTGCTTGTCTTTGCCGTAAAAAACATTCAATTTCTTGAAATATTGAAGCACAACAAAATTCGAAAGGGCATAAGGAAATTTCATTTTTTTAGTTTCTGGATATTTGTGTTTTCTCTGGTCTTCTACTAGTAGACAAAAGGAATCTCATACTCGTAGCTCACCGTGGGGATGCGTTGTGCTGCCCCAAGCTTGGAAGTTCTTCCCTCCCTCCCAATAAAAAACATTATACTTTTATTTTAAAAGAGTACTCAGCCATCTCATTAAGACAGGCGCCATTCTTTAGGAGAAAACACATCCAACCTATATCTAATAATTTAAACTACTACGGCCATTGAAGAAGACGAGGGAATCTCTCTCTTTAAACAATCAATAAAAATCTATAATAACAACAAAGTCTTGGAGATTCGAGGATTTGAGAAGACATTAAATTTACTAATGGGGCATCGAGTTCATTTGTCAATGGATGCCATTAAGAACAGCCCCACTTGAAGGTTCTGCTCTAGCCGGTTGAATTGGATTGAATACCAAAATAAAAAACACTTCGCTTGCTGTAATGGATGCTAAGTTTGTTTTGTTTTTGTTAAGAATCACGGATCTCTATGGTATGATATTGTCCACTTTGAATAAAGCTCTCGTGGCTTTACTTTGGGCTTCTCCAAAAAACCTCATGCCAATTGTGGTGTATTCCTTACTTATATACCCATGATTATTCCATAAATTAGTCAATGTAGGACTCACTCCCGACGATCCTCTACAATGTATGAATTGCAAATTGTTTCATTTTCCCCTGGTTTGGACTTAGCTTCTAGTTTTTGATATGGAAACACCTAAAATACCCAAAAAAAAAATTAAAAAAGTTCCCCACTTTCCTCCTCCCTTCCTTCAGCCCCATGATTACTCGGTAGGATTGGATTACAGAAGCATGGCACACAAAAAGTTGAAACTCAAATCGCATTGAAAAGGTGGAAATTAAAAAGACATCTTTCTTTCTTTTTTTCTTTCCTCTGTGGAAGAGTAGAGTAGTGTAGTAGTAGTAGTAGTTAAATTTGCCCTTTTTTCTTCTCTTTTTGACTCAATCTCGTTGCTTAAACAGAGCCCAAAGTAACCCAAAAACGAAACAAATTCAACTTTTTTTCAGCCATTAGAGAGTGGGGAAGCTCTCACAATTCACACCCCTCTCACGTGAGCTTCATAATATGAAGAAGAAAAGCCTAAGCCTAAGCCTAAACCTAAGCCTAAGTCACTACTGCTCTCTTCCTGATCTGTACTTTCCGTACCATTTGAAGAGACTTGAGTGACTCCACTTGAACACGAAGAACAAGGCTGAGAAAATTCCCCACCATTCTCCTCCACCCTCAACAAACCCATTACACTTCCCTGCGCCACTTTCCTTCCCTCTTTCTTTTTAGGCCTTCTTCTCTTCTGAAACAAAGAATACACAGCCCAATCCTCCATTTCCAGCTGCATTTTAGGAACAAAACAAAACAAAACAAAACAAAGTAGGAAATGAATCAGTTCTTTTGATGGAAAGAAGGGCAGTGTTGTAATTTGGCACGAGTACGTCCATGGTCAAACTTGTCTGTTACCTGTGTTGAGTTGGGAGTTGTTGTTGCAGAGACAGAGCCAGAGCGTGGCAGTCGATATTCATGCATGACCCACCGAGTCTTTGCTGTTCTTTCAGACACTTTTGACTCATAAAAAACCAGAGATTTCCTCAGCCCAACCACCTTGTTAATGCCCTGGTTAACAATCAACTTCTCTTTCCCAGTGGACTTCCATATCCCACACCCAGTATTTCTCCTCAACAAGCTCCTCTGTTTGCTAAAAAAGAATCTTTTTTCCTTAAAATCCCCTAAAACCCAACAACAAGAACATCAAGAACAACACGGAATCCAATCAATTCATAGAAATTAAGAAACTGAAACTCAGTAATGAGCTGAATTTGAATTTGAATTTGAATTTGAATTGTTATAGTTGTGTTACCAGGAAAGGCCGATGGATCTGTGAGGAAGACATCAAAGTCAGGAATGACCGAAGCAGGGAGAGGCAAATCAAACGCCTTCCTCTTCAAGTAGTGCTCGACCAGCTCCTCATCTGTGGGGCAAAATCGATACCCAAC

mRNA sequence

ACGTGCGGATTCGCCAAGTTTCTTGTGTCAGCTGCTCTTGCTGGTGCTCCTGCATGGGATTTCAGACGTACTCTTTATGAAAAAAAAGTCCACTTCAGGAGCTTGCGCACCAGAACTTACAGGAAAGGCCGATGGATCTGTGAGGAAGACATCAAAGTCAGGAATGACCGAAGCAGGGAGAGGCAAATCAAACGCCTTCCTCTTCAAGTAGTGCTCGACCAGCTCCTCATCTGTGGGGCAAAATCGATACCCAAC

Coding sequence (CDS)

ACGTGCGGATTCGCCAAGTTTCTTGTGTCAGCTGCTCTTGCTGGTGCTCCTGCATGGGATTTCAGACGTACTCTTTATGAAAAAAAAGTCCACTTCAGGAGCTTGCGCACCAGAACTTACAGGAAAGGCCGATGGATCTGTGAGGAAGACATCAAAGTCAGGAATGACCGAAGCAGGGAGAGGCAAATCAAACGCCTTCCTCTTCAAGTAGTGCTCGACCAGCTCCTCATCTGTGGGGCAAAATCGATACCCAAC

Protein sequence

TCGFAKFLVSAALAGAPAWDFRRTLYEKKVHFRSLRTRTYRKGRWICEEDIKVRNDRSRERQIKRLPLQVVLDQLLICGAKSIPN
Homology
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BLAST of Carg15539 vs. NCBI nr
Match: KAG7022642.1 (hypothetical protein SDJN02_16376, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  TCGFAKFLVSAALAGAPAWDFRRTLYEKKVHFRSLRTRTYRKGRWICEEDIKVRNDRSRE 60
          TCGFAKFLVSAALAGAPAWDFRRTLYEKKVHFRSLRTRTYRKGRWICEEDIKVRNDRSRE
Sbjct: 1  TCGFAKFLVSAALAGAPAWDFRRTLYEKKVHFRSLRTRTYRKGRWICEEDIKVRNDRSRE 60

Query: 61 RQIKRLPLQVVLDQLLICGAKSIPN 86
          RQIKRLPLQVVLDQLLICGAKSIPN
Sbjct: 61 RQIKRLPLQVVLDQLLICGAKSIPN 85

The following BLAST results are available for this feature:
BLAST of Carg15539 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022642.11.8e-40100.00hypothetical protein SDJN02_16376, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15539 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15539 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15539 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15539-RACarg15539-RAmRNA