Carg15519 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15519
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L18
Location	Carg_Chr06: 9764857 .. 9766395 (+)
RNA-Seq Expression	Carg15519
Synteny	Carg15519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTAGTTGGAGAGGAGAACGAAGCATTCCTTATGAGGGTGTAGAAACCTCTCCCTAGTAGACGCATTTTAAAATCATGATGCTAACGGTGATACGTAACGGGCCAAAGTGGACGATATTTGTTAGTAGTGGGCTTGAGCTGTTACAAAAACTCTACATATCCTTGACCTGACACTTTGGGAAGGTGACATTTTCAATTTTTGCTATAGGATCTGTCTCCAACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAGAAAGATCTCGCTTTATCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATAAGCCACAGGGTATGGTCAATGAGAAATCTGGGAGATTGACTCCCTTTGGAACAGCACTGAGTTCAAAATTATTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCCTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGTGAGTTCACTGCAACTAAGAATTAATTCATTTATGTTTAGCTTTCATTCTTACCCAACATCTGTAACGGTCCAAGCTCACCGCTAGCAGATATTGTTCTCTTTGAACTTTCCCTTTTGGACTTCCTCTAATAGATATTGCCCCCTTCAAAATGTCTTTACATGGACACTGAGTTTAGTTATCGTACATGGCCTTGCTTGAAAAGATTTATTCAATAAGTTCCATCTCTATGCCCTTGAGCTCTAGTCCGACTTGTCATTCTATGTACTCTTATCTATGTACTCTTACATATGTAGCAGGCCATATCGACAGTAGAATTACAAGTTTAGAAACTAAACAGACACCATCATAATTTAGGGTCGCATCCGCACCTTCAGAAGTGAAATCTTTGTTATATGTGGATAATATATGATTGCAGGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGAATATCCCTCTTGTGTTTTTCATTGTCTTCTGTATGGTTTGCTGTAACAGTGCCATCAGATGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTTGTTTCACTTGAAATTAAGAGGGAAATTATTCATTCATTCATCATCCTTTTTCAAAAACAAAATTTACATTGAATCTATCATTTGAAAAGAAAATTACAGACGCTTTGATGTCGATCTTGAAGAAATCGTTATTAGCCTATCTTTTGAATGTATTTTCCTAGAGTGACAGAGATTTGAATATCTGACCTCTTGGTAGATGATATATGTCTTAACTAATTGAACCATTGACTTTTAAAATATT

mRNA sequence

CATTAGTTGGAGAGGAGAACGAAGCATTCCTTATGAGGGTGTAGAAACCTCTCCCTAGTAGACGCATTTTAAAATCATGATGCTAACGGTGATACGTAACGGGCCAAAGTGGACGATATTTGTTAGTAGTGGGCTTGAGCTGTTACAAAAACTCTACATATCCTTGACCTGACACTTTGGGAAGGTGACATTTTCAATTTTTGCTATAGGATCTGTCTCCAACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAGAAAGATCTCGCTTTATCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATAAGCCACAGGGTATGGTCAATGAGAAATCTGGGAGATTGACTCCCTTTGGAACAGCACTGAGTTCAAAATTATTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCCTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGAATATCCCTCTTGTGTTTTTCATTGTCTTCTGTATGGTTTGCTGTAACAGTGCCATCAGATGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTTGTTTCACTTGAAATTAAGAGGGAAATTATTCATTCATTCATCATCCTTTTTCAAAAACAAAATTTACATTGAATCTATCATTTGAAAAGAAAATTACAGACGCTTTGATGTCGATCTTGAAGAAATCGTTATTAGCCTATCTTTTGAATGTATTTTCCTAGAGTGACAGAGATTTGAATATCTGACCTCTTGGTAGATGATATATGTCTTAACTAATTGAACCATTGACTTTTAAAATATT

Coding sequence (CDS)

ATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGA

Protein sequence

MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF

Homology

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_022972054.1 (50S ribosomal protein L18, chloroplastic [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGLVF
Sbjct: 156 VEALADAAREHGLVF 170

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: KAG6597602.1 (50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGLVF
Sbjct: 156 VEALADAAREHGLVF 170

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: KAG7029046.1 (50S ribosomal protein L18, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
          MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 1  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60

Query: 61 VEALADAAREHGLVF 76
          VEALADAAREHGLVF
Sbjct: 61 VEALADAAREHGLVF 75

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGLVF
Sbjct: 156 VEALADAAREHGLVF 170

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_022935706.1 (50S ribosomal protein L18, chloroplastic [Cucurbita moschata])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLV 75
           VEALADAAREHGLV
Sbjct: 156 VEALADAAREHGLV 169

[Close]

BLAST of Carg15519 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 8.1e-32
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAA STMQK+ISE +DY++GPT+EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 92  MHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGR 151

Query: 61  VEALADAAREHGLVF 76
           V+ALADAAREHGLVF
Sbjct: 152 VKALADAAREHGLVF 166

[Close]

BLAST of Carg15519 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-30
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           +EALA AAREHGL F
Sbjct: 156 IEALAAAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-24
Identity = 52/73 (71.23%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 3   TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVE 62
           TL + STM KS+S+ L+Y++GPT+EVA+K+GE IAKSCLEKGITKV FDRGG+ YHGR++
Sbjct: 98  TLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIK 157

Query: 63  ALADAAREHGLVF 76
           ALADAARE+GL F
Sbjct: 158 ALADAARENGLDF 170

[Close]

BLAST of Carg15519 vs. ExPASy Swiss-Prot
Match: A4XLR4 (50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rplR PE=3 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-16
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 2   HTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRV 61
           HTL A S+++  I   L  TS  +IE A+ +G  IA+   EKGITKV FDRGGYPYHGRV
Sbjct: 53  HTLVAASSLEPEIKSRL--TSTKSIEAAQYIGRVIAERAKEKGITKVVFDRGGYPYHGRV 112

Query: 62  EALADAAREHGLVF 76
           +ALADAARE GL F
Sbjct: 113 KALADAAREAGLEF 124

[Close]

BLAST of Carg15519 vs. ExPASy Swiss-Prot
Match: Q5L3S3 (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-16
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 3   TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVE 62
           T+ + ST+ K    GLD T+   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+
Sbjct: 52  TIVSASTLDKEF--GLDSTN--NIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVK 111

Query: 63  ALADAAREHGLVF 76
           ALADAARE GL F
Sbjct: 112 ALADAAREAGLEF 120

[Close]

BLAST of Carg15519 vs. ExPASy TrEMBL
Match: A0A6J1IAC8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470699 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGLVF
Sbjct: 156 VEALADAAREHGLVF 170

[Close]

BLAST of Carg15519 vs. ExPASy TrEMBL
Match: A0A6J1F5G8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442526 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.6e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLV 75
           VEALADAAREHGLV
Sbjct: 156 VEALADAAREHGLV 169

[Close]

BLAST of Carg15519 vs. ExPASy TrEMBL
Match: A0A5A7UA63 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00090 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.9e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDY++GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 156 VEALADAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. ExPASy TrEMBL
Match: A0A6J1IUS1 (50S ribosomal protein L18, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479481 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.9e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYT+GPTIEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 156 VEALADAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. ExPASy TrEMBL
Match: A0A6J1GVR5 (50S ribosomal protein L18, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457603 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.9e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYT+GPTIEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 156 VEALADAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-31
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           +EALA AAREHGL F
Sbjct: 156 IEALAAAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. TAIR 10
Match: AT3G17626.1 (structural constituent of ribosome )

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 22 SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 60
          +G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 10 TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

The following BLAST results are available for this feature:

BLAST of Carg15519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972054.1	3.2e-33	100.00	50S ribosomal protein L18, chloroplastic [Cucurbita maxima]	[more]
KAG6597602.1	3.2e-33	100.00	50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAG7029046.1	3.2e-33	100.00	50S ribosomal protein L18, chloroplastic [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_023538937.1	3.2e-33	100.00	50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022935706.1	1.6e-32	100.00	50S ribosomal protein L18, chloroplastic [Cucurbita moschata]	[more]

BLAST of Carg15519 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82195	8.1e-32	85.33	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
Q9SX68	2.0e-30	86.67	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
Q8SAY0	1.6e-24	71.23	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
A4XLR4	1.6e-16	60.81	50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4...	[more]
Q5L3S3	2.8e-16	64.38	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ...	[more]

BLAST of Carg15519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAC8	1.5e-33	100.00	50S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1F5G8	7.6e-33	100.00	50S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7UA63	4.9e-32	96.00	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1IUS1	4.9e-32	96.00	50S ribosomal protein L18, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GVR5	4.9e-32	96.00	50S ribosomal protein L18, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Carg15519 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48350.1	1.4e-31	86.67	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	6.8e-10	73.68	structural constituent of ribosome	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 2..75 e-value: 3.0E-23 score: 82.4
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..75
None	No IPR available	GENE3D	3.30.420.100		coord: 1..75 e-value: 3.3E-27 score: 97.1
None	No IPR available	PANTHER	PTHR12899:SF3	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..75
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 2..73 e-value: 2.30962E-27 score: 92.9883
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 2..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15519-RA	Carg15519-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome