Carg15476 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15476
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SREBP regulating gene protein
Location	Carg_Chr06: 10052284 .. 10054762 (-)
RNA-Seq Expression	Carg15476
Synteny	Carg15476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCGTTTCAGTTTATCGATCGTATTCTTCCAATTTTTCCTCTTCTTTCCTTCAAGAATTTCAGCGATCAGGTGAAAATTTCCACTGTCCGTTTTTAATTCCTTCCATTTCCATTCTGAGATTTTGGCGTTTCATACTGTTCTGCATCCATTACAATTAAAAAAAAACCCGAAGAAAGTTGCTGTTCAGATTCTTGAATCTTTGAATCCTGCTAAAATGTATTTCTCTTCAGTTTCGTTAGTTTTCTCAACGCTCCTGTGCCATTTTGTTCACTTTTTCTTGTTTTTTTATTGAAGGAATCATATAGGCTTAGCAGTAAAGAACACGTGTAGGAGCACTGTTCAGGGAAGATATTTACTGACCGATGATAATGGTAATATTTCTTTCATTATCTCGCAGTGCTACTTCAGTTCTTCATTCTTTTTTTACAGTTACCTTGAATATCCCTGAACAATATCCTGTGATTGAAGACATGCTTTTGTTAGAAATTGCTAGTAACCCACAGAACCTGATGGATATAGCTTCCATTGCAGGTCGTGTATGTGATGCTTTATCTATTGATCCACTATCTCATTGCTGCCTTGGCAAAGGGGACAAATTTCCTTGTCAGTGAGTTTTTTTTTTTTTTCTTTTTTTCTTTTTTTCTTTTTTTCCAAATAAATCTCCCTCCAATGGCCCATGAGGAGTGTAAGAGCTCTGTCAAGCTACCTTATTGTTTGTTTTTTCTTTTTACACGTTGCAGTGGGTGCAATCTTGTTTCACAATGTTGCAATTCGTATGAATATTGTGTTTCATGCTGCCTGAATCCTTCAAAGGTATGATGGGTTTCTAATTCTTCTTATGCTTCATTTTTGCTATGGAATCTAAAATCTGGTGCATTTCTGGATGATGATGGTTGCAGACAAAAGGAGAACAAATACTAAAAATCAAAATTTCCAAGCCAGCCACGGCAGGTGATCACTAACGCTCTATATATGAATGGAACAGTTCAAGCCCACCGCTAGTAGATCTTGTCTTCTTTGAGCTTTTTCTTAAAGGTTTTAAAATACGTTTGCTAGGGAGAGGTTTCCACACACTTATAAATAATGTTTTGTTCTCCTCCCCAACCGATGTGAGATCTCATAATCCACCCCCTTCAAGGCCCAATGTCCTCGTTGACACTCATTTCTTTCTCCAATCGATGCGGGACCTCAATCCACCTCCCTTTGAGACCCAACGTCCTTGCTGGCACACTGCCTCGTGTCTAATCCCCTTCGAAGATCAGCCTCCTCTCTGGTACATCGCCCGATGTCTGGCTCTGATACCATTTGTAATGGCCCAAACCCACTACTAGCACATATTATATCCTCTTTGGATTTTCTCAGGCTTCCCTTCAAGGTTATTAAAACACATTTGTTAGGGATAAATTTTTAGACTCTTATAAAAAATGCTTCGTTCTCCGCCCTAACTACCGTGGGATCTGACCGTTAATGTTTTGGAACAGTATTTTACGATTAATATTCATGTGAAGCTTACTTTTCATTTAAGGAATCATTCCCCCTTGGAGTGGATTTGAGATCATAATTTAGTCTGAGATTAAATATATGAAACTGTGGTAAATGATGCAGGGACATATGCCAGTGTCTTTGATTTCTGTGCTGGGAGGTGTCGTCATAATTCTGAGAGTGTTGTAAGTGTCCTGCATTGTGTTATTGCATTTTATCTTTCTTTAGAGAGTTGAAATATTTGATTGAATTTCAAATTCTCAGGTGCATGAAAATGCTTATCACAGTGATTACCATCATTGCTTTTCCCTGCCATCATATTCTTCAGGTTAGCTACTGAGTTCTGAATTCAAACCAAGTAGTCATTATAGTTTCTTTAAGCATTCTGTGATGTTTATGATTCATTTCCAAAGTTTGGACTTCGTAGGAGTGAGCAGCACACAACTAGAATTCAGACTGAATGGCATCAATGTCATTGTTGGAAGGTCAGGGTAGCTAGGATTGTTTATTATATACGCTGTTTGATCTCTATCTCACTCTTCTGAACTGAATCTACGATAGACAAGGAGAATCATGTGATTCAGTTTGCAAGTCAAATGGACAATCATGCGTCTCAAACAAGATTTTGGTCCTAAATCATTGTGACATGTGAGTAATCTGCTGTTTTCTTTTCCTTCGTTTCTTATGGAGCCATTAAAACATGTTTTTTCTAATTTGGGTATGATAGAATACAAAAATACATGAGCTGCAAAGGAGGTTGCATAGAAAGTGTTGGGCCTGATCACCCTGCTGAAGTTGCTTATAATGCTCCTGAAGAACTGGTACGGTGTCCTGTTCTTTATGTATAGCACATTACATACGAGTTTTATAGCACATTTTGTTTATCCTATGAACTTCAGAATCCAGGAGCATGCTTATATAGTAGCGCACAGTCAATACTTACTTGTGATGGCTCACACCCACATACCATGAGACTTTGCCCTTGTGCGTAG

mRNA sequence

ATGCATCGTTTCAGTTTATCGATCGTATTCTTCCAATTTTTCCTCTTCTTTCCTTCAAGAATTTCAGCGATCAGGAATCATATAGGCTTAGCAGTAAAGAACACGTGTAGGAGCACTGTTCAGGGAAGATATTTACTGACCGATGATAATGGTCGTGTATGTGATGCTTTATCTATTGATCCACTATCTCATTGCTGCCTTGGCAAAGGGGACAAATTTCCTTTGGGTGCAATCTTGTTTCACAATGTTGCAATTCGGACATATGCCAGTGTCTTTGATTTCTGTGCTGGGAGGTGTCGTCATAATTCTGAGAGTGTTGTGCATGAAAATGCTTATCACAGTGATTACCATCATTGCTTTTCCCTGCCATCATATTCTTCAGGAGTGAGCAGCACACAACTAGAATTCAGACTGAATGGCATCAATGTCATTGTTGGAAGGTCAGGACAAGGAGAATCATGTGATTCAGTTTGCAAGTCAAATGGACAATCATGCGTCTCAAACAAGATTTTGGTCCTAAATCATTGTGACATAATACAAAAATACATGAGCTGCAAAGGAGGTTGCATAGAAAGTGTTGGGCCTGATCACCCTGCTGAAGTTGCTTATAATGCTCCTGAAGAACTGAATCCAGGAGCATGCTTATATAGTAGCGCACAGTCAATACTTACTTGTGATGGCTCACACCCACATACCATGAGACTTTGCCCTTGTGCGTAG

Coding sequence (CDS)

ATGCATCGTTTCAGTTTATCGATCGTATTCTTCCAATTTTTCCTCTTCTTTCCTTCAAGAATTTCAGCGATCAGGAATCATATAGGCTTAGCAGTAAAGAACACGTGTAGGAGCACTGTTCAGGGAAGATATTTACTGACCGATGATAATGGTCGTGTATGTGATGCTTTATCTATTGATCCACTATCTCATTGCTGCCTTGGCAAAGGGGACAAATTTCCTTTGGGTGCAATCTTGTTTCACAATGTTGCAATTCGGACATATGCCAGTGTCTTTGATTTCTGTGCTGGGAGGTGTCGTCATAATTCTGAGAGTGTTGTGCATGAAAATGCTTATCACAGTGATTACCATCATTGCTTTTCCCTGCCATCATATTCTTCAGGAGTGAGCAGCACACAACTAGAATTCAGACTGAATGGCATCAATGTCATTGTTGGAAGGTCAGGACAAGGAGAATCATGTGATTCAGTTTGCAAGTCAAATGGACAATCATGCGTCTCAAACAAGATTTTGGTCCTAAATCATTGTGACATAATACAAAAATACATGAGCTGCAAAGGAGGTTGCATAGAAAGTGTTGGGCCTGATCACCCTGCTGAAGTTGCTTATAATGCTCCTGAAGAACTGAATCCAGGAGCATGCTTATATAGTAGCGCACAGTCAATACTTACTTGTGATGGCTCACACCCACATACCATGAGACTTTGCCCTTGTGCGTAG

Protein sequence

MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSIDPLSHCCLGKGDKFPLGAILFHNVAIRTYASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRSGQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEELNPGACLYSSAQSILTCDGSHPHTMRLCPCA

Homology

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BLAST of Carg15476 vs. NCBI nr
Match: KAG7029089.1 (hypothetical protein SDJN02_10272, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 504.2 bits (1297), Expect = 6.1e-139
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID
Sbjct: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60

Query: 61  PLSHCCLGKGDKFPLGAILFHNVAIRTYASVFDFCAGRCRHNSESVVHENAYHSDYHHCF 120
           PLSHCCLGKGDKFPLGAILFHNVAIRTYASVFDFCAGRCRHNSESVVHENAYHSDYHHCF
Sbjct: 61  PLSHCCLGKGDKFPLGAILFHNVAIRTYASVFDFCAGRCRHNSESVVHENAYHSDYHHCF 120

Query: 121 SLPSYSSGVSSTQLEFRLNGINVIVGRSGQGESCDSVCKSNGQSCVSNKILVLNHCDIIQ 180
           SLPSYSSGVSSTQLEFRLNGINVIVGRSGQGESCDSVCKSNGQSCVSNKILVLNHCDIIQ
Sbjct: 121 SLPSYSSGVSSTQLEFRLNGINVIVGRSGQGESCDSVCKSNGQSCVSNKILVLNHCDIIQ 180

Query: 181 KYMSCKGGCIESVGPDHPAEVAYNAPEELNPGACLYSSAQSILTCDGSHPHTMRLCPCA 240
           KYMSCKGGCIESVGPDHPAEVAYNAPEELNPGACLYSSAQSILTCDGSHPHTMRLCPCA
Sbjct: 181 KYMSCKGGCIESVGPDHPAEVAYNAPEELNPGACLYSSAQSILTCDGSHPHTMRLCPCA 239

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BLAST of Carg15476 vs. NCBI nr
Match: XP_023539880.1 (uncharacterized protein LOC111800426 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.0 bits (1164), Expect = 1.6e-123
Identity = 225/271 (83.03%), Postives = 227/271 (83.76%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRST+QGRYLLTDDNGRVCDALSID
Sbjct: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTIQGRYLLTDDNGRVCDALSID 60

Query: 61  PLSHCCLGKGDKFP--------------------------------LGAILFHNVAIRTY 120
           PLSHCCLGKGDKFP                                L   +       TY
Sbjct: 61  PLSHCCLGKGDKFPCHGCNLVSQCCNSYEYCVSCCLNPSKTKGEQILKIKISKPATAGTY 120

Query: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRS 180
           ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR 
Sbjct: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR- 180

Query: 181 GQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240
            QGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE
Sbjct: 181 -QGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240

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BLAST of Carg15476 vs. NCBI nr
Match: XP_022972111.1 (uncharacterized protein LOC111470743 [Cucurbita maxima])

HSP 1 Score: 448.4 bits (1152), Expect = 4.0e-122
Identity = 223/271 (82.29%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRST+QGRYLLTDDNGRVCDALSID
Sbjct: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTIQGRYLLTDDNGRVCDALSID 60

Query: 61  PLSHCCLGKGDKFP--------------------------------LGAILFHNVAIRTY 120
           PLSHCCLGKGDKF                                 L   +       TY
Sbjct: 61  PLSHCCLGKGDKFSCHGCNLVSQCCNSYEYCVSCCLNPSKTKGEQILKIKISKPATAGTY 120

Query: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRS 180
           ASVFDFCAGRCRHNSESVVHENAYH DYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR 
Sbjct: 121 ASVFDFCAGRCRHNSESVVHENAYHGDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR- 180

Query: 181 GQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240
            QGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE
Sbjct: 181 -QGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240

[Close]

BLAST of Carg15476 vs. NCBI nr
Match: XP_022932718.1 (uncharacterized protein LOC111439182 [Cucurbita moschata])

HSP 1 Score: 448.0 bits (1151), Expect = 5.2e-122
Identity = 223/271 (82.29%), Postives = 226/271 (83.39%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRST+QGRYLLTDDNGRVCDALSID
Sbjct: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTIQGRYLLTDDNGRVCDALSID 60

Query: 61  PLSHCCLGKGDKFP--------------------------------LGAILFHNVAIRTY 120
           PLSHCCLGKGDKFP                                L   +       TY
Sbjct: 61  PLSHCCLGKGDKFPCHGCNLVSQCCNSYEYCVSCCLNPSKTKGEQILKIKISKPATAGTY 120

Query: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRS 180
           ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR 
Sbjct: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR- 180

Query: 181 GQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240
            QGESCDSVCKSN QSCVSNKILVLNHCDIIQK+MSCKGGCIESVGPDHPAEVAYNAPEE
Sbjct: 181 -QGESCDSVCKSNEQSCVSNKILVLNHCDIIQKHMSCKGGCIESVGPDHPAEVAYNAPEE 240

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BLAST of Carg15476 vs. NCBI nr
Match: XP_038899507.1 (uncharacterized protein LOC120086783 [Benincasa hispida] >XP_038899515.1 uncharacterized protein LOC120086783 [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.9e-103
Identity = 187/271 (69.00%), Postives = 210/271 (77.49%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           +HRF  S++FFQFF  FPS ISAIR++IGLAV ++CRSTVQGRYLLTDDNG VCDALS+D
Sbjct: 3   VHRFDSSLLFFQFFFLFPSTISAIRSNIGLAVNSSCRSTVQGRYLLTDDNGYVCDALSVD 62

Query: 61  PLSHCCLGKGDKFP--------------------------------LGAILFHNVAIRTY 120
           PLSHCCLGKG+KFP                                L   +       TY
Sbjct: 63  PLSHCCLGKGEKFPCHGCNLVSQCCNSYEYCVSCCQNPSRTKREQILKIKIAKPATAGTY 122

Query: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRS 180
           ASVFDFC GRCRHNSESVVHENAYHS YHHCFSLPSYSSGV+ TQLEFRLNGINV++GR 
Sbjct: 123 ASVFDFCVGRCRHNSESVVHENAYHSAYHHCFSLPSYSSGVNGTQLEFRLNGINVVIGR- 182

Query: 181 GQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240
            QGESCDSVCKSN QSCV NKILVLNHCDI++KY+SCKGGC+ S G D PAEVA++AP+E
Sbjct: 183 -QGESCDSVCKSNEQSCVPNKILVLNHCDIMKKYLSCKGGCLASAGADQPAEVAFDAPKE 242

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BLAST of Carg15476 vs. ExPASy Swiss-Prot
Match: Q6GNT2 (SREBP regulating gene protein OS=Xenopus laevis OX=8355 GN=spring1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.1e-05
Identity = 34/126 (26.98%), Postives = 53/126 (42.06%), Query Frame = 0


Query: 32  VKNTCRSTVQGRYLLTDDNGRVCD--------ALSIDPLS-------------------- 91
           + N CR++VQG+ L+TDD G +C+          +I+  S                    
Sbjct: 71  ISNQCRNSVQGKLLVTDDMGYICERKELLANGCCNINVASTKLYSCETCLPNGCCSVYEF 130

Query: 92  --HCCLGKGDKFPL------GAILFHNVAIRTYASVFDFCAGRCRHNSESVVHENAYHSD 121
              CCL    +  L       A+ F N+  +     F+ C  +CR +S+SV HEN Y + 
Sbjct: 131 CVSCCLQPNKQLQLERFLNKAAVAFQNL-FQAVEDHFELCLAKCRTSSQSVQHENTYRNP 190

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BLAST of Carg15476 vs. ExPASy Swiss-Prot
Match: Q8BTG6 (SREBP regulating gene protein OS=Mus musculus OX=10090 GN=Spring1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.6e-04
Identity = 31/115 (26.96%), Postives = 46/115 (40.00%), Query Frame = 0


Query: 34  NTCRSTVQGRYLLTDDNGRVCDALSI------------------------------DPLS 93
           N CR++VQG++LLTD+ G VC+   +                              +   
Sbjct: 73  NQCRNSVQGKHLLTDELGYVCERKDLLANGCCDVSVPSTKQYCCDGCLANGCCEAYEYCV 132

Query: 94  HCCLGKGDKFPL------GAILFHNVAIRTYASVFDFCAGRCRHNSESVVHENAY 113
            CCL    +  L       A+ F N+        F+ C  +CR +S+SV HEN Y
Sbjct: 133 SCCLQPSKQLLLERFLNRAAVAFQNL-FMAVEDHFELCLAKCRTSSQSVQHENTY 186

[Close]

BLAST of Carg15476 vs. ExPASy TrEMBL
Match: A0A6J1I525 (SREBP regulating gene protein OS=Cucurbita maxima OX=3661 GN=LOC111470743 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.9e-122
Identity = 223/271 (82.29%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRST+QGRYLLTDDNGRVCDALSID
Sbjct: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTIQGRYLLTDDNGRVCDALSID 60

Query: 61  PLSHCCLGKGDKFP--------------------------------LGAILFHNVAIRTY 120
           PLSHCCLGKGDKF                                 L   +       TY
Sbjct: 61  PLSHCCLGKGDKFSCHGCNLVSQCCNSYEYCVSCCLNPSKTKGEQILKIKISKPATAGTY 120

Query: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRS 180
           ASVFDFCAGRCRHNSESVVHENAYH DYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR 
Sbjct: 121 ASVFDFCAGRCRHNSESVVHENAYHGDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR- 180

Query: 181 GQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240
            QGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE
Sbjct: 181 -QGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240

[Close]

BLAST of Carg15476 vs. ExPASy TrEMBL
Match: A0A6J1F2J3 (SREBP regulating gene protein OS=Cucurbita moschata OX=3662 GN=LOC111439182 PE=3 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.5e-122
Identity = 223/271 (82.29%), Postives = 226/271 (83.39%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRST+QGRYLLTDDNGRVCDALSID
Sbjct: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTIQGRYLLTDDNGRVCDALSID 60

Query: 61  PLSHCCLGKGDKFP--------------------------------LGAILFHNVAIRTY 120
           PLSHCCLGKGDKFP                                L   +       TY
Sbjct: 61  PLSHCCLGKGDKFPCHGCNLVSQCCNSYEYCVSCCLNPSKTKGEQILKIKISKPATAGTY 120

Query: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRS 180
           ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR 
Sbjct: 121 ASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGR- 180

Query: 181 GQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEE 240
            QGESCDSVCKSN QSCVSNKILVLNHCDIIQK+MSCKGGCIESVGPDHPAEVAYNAPEE
Sbjct: 181 -QGESCDSVCKSNEQSCVSNKILVLNHCDIIQKHMSCKGGCIESVGPDHPAEVAYNAPEE 240

[Close]

BLAST of Carg15476 vs. ExPASy TrEMBL
Match: A0A1S4DZY1 (SREBP regulating gene protein OS=Cucumis melo OX=3656 GN=LOC103494541 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.5e-103
Identity = 185/269 (68.77%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSID 60
           +HRF L+ +FFQFF  FPS ISAIR +IGLAV ++CRSTVQGRYLL+DDNG VCDALS+D
Sbjct: 3   IHRFDLTFLFFQFFFLFPSTISAIRTNIGLAVNSSCRSTVQGRYLLSDDNGYVCDALSVD 62

Query: 61  PLSHCCLGKGDKFPLGAILFHNVAIR------------------------------TYAS 120
           PLS CC GKG+KFP   +  +   +                               TYAS
Sbjct: 63  PLSRCCHGKGEKFPCHFLFPYEFELESKNWRLSGCCMQTKREQILKIKIAKPATAGTYAS 122

Query: 121 VFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRSGQ 180
           +FDFC GRCRHNSESVVHENAYHS +HHCFSLPSYSSG +STQLEFRL+GINVI+GR  Q
Sbjct: 123 IFDFCVGRCRHNSESVVHENAYHSAFHHCFSLPSYSSGDNSTQLEFRLSGINVIIGR--Q 182

Query: 181 GESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEELN 240
           GESCDSVCKSNGQSCV NKILVLNHCDI+QKY+SCKGGC+ SVG D PAEVAY+AP+ELN
Sbjct: 183 GESCDSVCKSNGQSCVPNKILVLNHCDIMQKYLSCKGGCLASVGTDQPAEVAYDAPKELN 242

[Close]

BLAST of Carg15476 vs. ExPASy TrEMBL
Match: A0A6J1IXW2 (SREBP regulating gene protein OS=Cucurbita maxima OX=3661 GN=LOC111479456 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.7e-102
Identity = 186/269 (69.14%), Postives = 208/269 (77.32%), Query Frame = 0


Query: 3   RFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSIDPL 62
           R SLS++FFQFFL FPS ISAIRN+IGL V  +CRSTVQGRYLLTDD+G VCDA S DPL
Sbjct: 5   RISLSLLFFQFFLLFPSIISAIRNNIGLVVNRSCRSTVQGRYLLTDDSGYVCDASSFDPL 64

Query: 63  SHCCLGKGDKFPLGA----------------------------ILFHNVA----IRTYAS 122
           S CCLGKG+KFP                               IL   +A      TYA 
Sbjct: 65  SRCCLGKGEKFPCHGCNLVSQCCNSYEYCVSCCQDPSRTKREQILKIKIAKPSTAGTYAG 124

Query: 123 VFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRSGQ 182
           VFDFC GRCRHNSESVVHENAY SDYHHCFSLPSYSSGV+ T+LEF+LNG+NVI+GR  Q
Sbjct: 125 VFDFCVGRCRHNSESVVHENAYRSDYHHCFSLPSYSSGVNGTELEFKLNGVNVIIGR--Q 184

Query: 183 GESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEELN 240
           GESCDSVCK+NGQSC+ NKI+VLNHCDI+QKY+SCKGGC+ SVGPD PAEVAYN+P+ELN
Sbjct: 185 GESCDSVCKTNGQSCIPNKIMVLNHCDIMQKYLSCKGGCLSSVGPDQPAEVAYNSPKELN 244

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BLAST of Carg15476 vs. ExPASy TrEMBL
Match: A0A6J1CVD9 (SREBP regulating gene protein OS=Momordica charantia OX=3673 GN=LOC111014633 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.7e-102
Identity = 188/270 (69.63%), Postives = 205/270 (75.93%), Query Frame = 0


Query: 2   HRFSLSIVFFQFFLFFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDALSIDP 61
           HR SLS+ FF F L F SRISAIRN+IGL + +TCRSTVQGRY LTDD G VC+ALSIDP
Sbjct: 5   HRLSLSLTFFHFLLLFSSRISAIRNNIGLEITSTCRSTVQGRYFLTDDKGYVCNALSIDP 64

Query: 62  LSHCCLGKGDKFP--------------------------------LGAILFHNVAIRTYA 121
           LSHCCLG G+KFP                                L   +    +  TYA
Sbjct: 65  LSHCCLGNGEKFPCHGCNLVSQCCNSYEYCVSCCQGPSRTKREQILKIKIAKPASAGTYA 124

Query: 122 SVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVIVGRSG 181
           SVFDFC GRCRHNSESVVHENAYHSDYHHCFSLPSYSSGV+STQLEFRLNGINV+VGR  
Sbjct: 125 SVFDFCVGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVNSTQLEFRLNGINVVVGR-- 184

Query: 182 QGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYNAPEEL 240
           QGESCDSVCKSNGQSCV NKI VLN CDI+QKY+SCKGGC+ SVG D PAEVAY+AP+EL
Sbjct: 185 QGESCDSVCKSNGQSCVPNKIAVLNQCDIMQKYLSCKGGCLASVGSDQPAEVAYSAPKEL 244

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BLAST of Carg15476 vs. TAIR 10
Match: AT3G59390.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2054 (InterPro:IPR019352); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 285.4 bits (729), Expect = 4.2e-77
Identity = 143/275 (52.00%), Postives = 181/275 (65.82%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFL----FFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDA 60
           M +   S++F    L     FP R+SAIR  IG   + +CR+TVQGRYL++DD G VCDA
Sbjct: 1   MSKSGFSLLFLVLLLIMGFLFPLRVSAIRKDIGFLEERSCRTTVQGRYLISDDEGNVCDA 60

Query: 61  LSIDPLSHCCLGKGDKF------------------------PLGAILFHNVAIR------ 120
           LS++  + CC  KG++F                        P   +L   V ++      
Sbjct: 61  LSLESRTRCCPWKGERFSCHGCNILSQCCNSYEFCVSCCLNPSQTLLEKVVKVKVAKPAT 120

Query: 121 --TYASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVI 180
             TY SVFDFCAGRCRHNSESVVHENAYHS++HHCFSL S +SG + TQ+E RL GI+VI
Sbjct: 121 SGTYKSVFDFCAGRCRHNSESVVHENAYHSEFHHCFSLTSNASGANLTQVETRLLGIDVI 180

Query: 181 VGRSGQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYN 240
           VG   QG+SCD+VCKS GQ CV NK+ +LN CD++++YM+CKG C+ S G D PAEV  +
Sbjct: 181 VG--SQGDSCDAVCKSRGQLCVMNKLSLLNQCDVMKRYMNCKGSCLASAGADQPAEVVED 240

[Close]

BLAST of Carg15476 vs. TAIR 10
Match: AT3G59390.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2054 (InterPro:IPR019352); Has 184 Blast hits to 184 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). )

HSP 1 Score: 285.4 bits (729), Expect = 4.2e-77
Identity = 143/275 (52.00%), Postives = 181/275 (65.82%), Query Frame = 0


Query: 1   MHRFSLSIVFFQFFL----FFPSRISAIRNHIGLAVKNTCRSTVQGRYLLTDDNGRVCDA 60
           M +   S++F    L     FP R+SAIR  IG   + +CR+TVQGRYL++DD G VCDA
Sbjct: 1   MSKSGFSLLFLVLLLIMGFLFPLRVSAIRKDIGFLEERSCRTTVQGRYLISDDEGNVCDA 60

Query: 61  LSIDPLSHCCLGKGDKF------------------------PLGAILFHNVAIR------ 120
           LS++  + CC  KG++F                        P   +L   V ++      
Sbjct: 61  LSLESRTRCCPWKGERFSCHGCNILSQCCNSYEFCVSCCLNPSQTLLEKVVKVKVAKPAT 120

Query: 121 --TYASVFDFCAGRCRHNSESVVHENAYHSDYHHCFSLPSYSSGVSSTQLEFRLNGINVI 180
             TY SVFDFCAGRCRHNSESVVHENAYHS++HHCFSL S +SG + TQ+E RL GI+VI
Sbjct: 121 SGTYKSVFDFCAGRCRHNSESVVHENAYHSEFHHCFSLTSNASGANLTQVETRLLGIDVI 180

Query: 181 VGRSGQGESCDSVCKSNGQSCVSNKILVLNHCDIIQKYMSCKGGCIESVGPDHPAEVAYN 240
           VG   QG+SCD+VCKS GQ CV NK+ +LN CD++++YM+CKG C+ S G D PAEV  +
Sbjct: 181 VG--SQGDSCDAVCKSRGQLCVMNKLSLLNQCDVMKRYMNCKGSCLASAGADQPAEVVED 240

The following BLAST results are available for this feature:

BLAST of Carg15476 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029089.1	6.1e-139	100.00	hypothetical protein SDJN02_10272, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023539880.1	1.6e-123	83.03	uncharacterized protein LOC111800426 [Cucurbita pepo subsp. pepo]	[more]
XP_022972111.1	4.0e-122	82.29	uncharacterized protein LOC111470743 [Cucurbita maxima]	[more]
XP_022932718.1	5.2e-122	82.29	uncharacterized protein LOC111439182 [Cucurbita moschata]	[more]
XP_038899507.1	1.9e-103	69.00	uncharacterized protein LOC120086783 [Benincasa hispida] >XP_038899515.1 unchara...	[more]

BLAST of Carg15476 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6GNT2	7.1e-05	26.98	SREBP regulating gene protein OS=Xenopus laevis OX=8355 GN=spring1 PE=2 SV=1	[more]
Q8BTG6	4.6e-04	26.96	SREBP regulating gene protein OS=Mus musculus OX=10090 GN=Spring1 PE=2 SV=1	[more]

BLAST of Carg15476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I525	1.9e-122	82.29	SREBP regulating gene protein OS=Cucurbita maxima OX=3661 GN=LOC111470743 PE=3 S...	[more]
A0A6J1F2J3	2.5e-122	82.29	SREBP regulating gene protein OS=Cucurbita moschata OX=3662 GN=LOC111439182 PE=3...	[more]
A0A1S4DZY1	4.5e-103	68.77	SREBP regulating gene protein OS=Cucumis melo OX=3656 GN=LOC103494541 PE=3 SV=1	[more]
A0A6J1IXW2	1.7e-102	69.14	SREBP regulating gene protein OS=Cucurbita maxima OX=3661 GN=LOC111479456 PE=3 S...	[more]
A0A6J1CVD9	1.7e-102	69.63	SREBP regulating gene protein OS=Momordica charantia OX=3673 GN=LOC111014633 PE=...	[more]

BLAST of Carg15476 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59390.2	4.2e-77	52.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G59390.1	4.2e-77	52.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019352	SREBP regulating gene protein	PFAM	PF10218	DUF2054	coord: 83..120 e-value: 4.7E-9 score: 36.4 coord: 33..67 e-value: 2.0E-6 score: 27.9
IPR019352	SREBP regulating gene protein	PANTHER	PTHR13481	UNCHARACTERIZED	coord: 83..210 coord: 5..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15476-RA	Carg15476-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000640	positive regulation of SREBP signaling pathway
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016758	hexosyltransferase activity