Carg15464 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15464
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein of unknown function (DUF 3339)
Location	Carg_Chr06: 10114836 .. 10115482 (-)
RNA-Seq Expression	Carg15464
Synteny	Carg15464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAAACAATGGAGCATGTTGGTGATCGAATGGAAAGGACGTTCGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAGGTAAAGGCAATAGCTAAACGGGATCCCGAGCTTACAAGTACTTGCTTGTGGATGCTATAAAAAATGGGATCCCTATTTTTCGTTCTTACCCCATTTTAAGTAGGTACTTGTAAGGTCGGGTCGTTGCAAGTTAAATAGATATGAATTATTTATATAAATGATTGTGATTATTTATATAATTAGTTGAAGTAACGTATATGCTAATATGAAAGCGAATAGAGTCGTTGTCCAATGAAAGTGGTATAATTAAATACATCTCTAATCACCTTTAATTTGTCATGTTTTGAAGAACGCCCAATTATAAAAACAGCATAAACCGGAGGCAGATGGGCAGTAGCAAAAGCAAAGAGAAAGAAGAAGAATGGCGGATTGGGGCCCTGTTCTTGTGGCAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

mRNA sequence

AATCAAACAATGGAGCATGTTGGTGATCGAATGGAAAGGACGTTCGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

Coding sequence (CDS)

ATGGAGCATGTTGGTGATCGAATGGAAAGGACGTTCGATGTTGATCGAGTGAGAGAAAGCCAAGCTGAAGTGATTCTGTTCATTCTGCTATCGCCGGGGCTTCTGTTCCAAGTCCACGGCGCCGACAAGTTCATCCAATTCGGCAACTTTGAGACCAGCGCTACCTCCATTTTTCTTCATTCCCTCATCTTCTTTGCTCTCTTTTGCCTCTTCACTCTCGTCCTCCATCTTCATATCTACGTCTGA

Protein sequence

MEHVGDRMERTFDVDRVRESQAEVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV

Homology

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: KAG7029100.1 (hypothetical protein SDJN02_10284 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 8.1e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MEHVGDRMERTFDVDRVRESQAEVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLH 60
          MEHVGDRMERTFDVDRVRESQAEVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLH
Sbjct: 1  MEHVGDRMERTFDVDRVRESQAEVILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLH 60

Query: 61 SLIFFALFCLFTLVLHLHIYV 82
          SLIFFALFCLFTLVLHLHIYV
Sbjct: 61 SLIFFALFCLFTLVLHLHIYV 81

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_022972134.1 (uncharacterized protein LOC111470766 [Cucurbita maxima])

HSP 1 Score: 110.9 bits (276), Expect = 5.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV
Sbjct: 22 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 79

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_022932695.1 (uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 uncharacterized protein LOC111799840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 5.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV
Sbjct: 11 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 68

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: XP_038907108.1 (uncharacterized protein LOC120092931 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-20
Identity = 54/58 (93.10%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQVHGA+KFI+FGNFETSATSIFLHSLIFFALFCLFTLV+HLHIY+
Sbjct: 11 VILFILLSPGLLFQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTLVIHLHIYI 68

[Close]

BLAST of Carg15464 vs. NCBI nr
Match: KAG7018460.1 (hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 8.2e-19
Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LFILLSPGL+ QVHGA+KFI+FGNFETSATSIFLHSLIFFALFCLFTLVLHLHIY+
Sbjct: 11 VVLFILLSPGLVVQVHGAEKFIEFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYI 68

[Close]

BLAST of Carg15464 vs. ExPASy TrEMBL
Match: A0A6J1IAL9 (uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV
Sbjct: 22 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 79

[Close]

BLAST of Carg15464 vs. ExPASy TrEMBL
Match: A0A6J1F2V4 (uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC111439164 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV
Sbjct: 11 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 68

[Close]

BLAST of Carg15464 vs. ExPASy TrEMBL
Match: A0A6J1I7P7 (uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LF+LLSPGLLFQV G   FIQFGNF+TS  SIF+HSLIFFAL CLFT VL LHIY+
Sbjct: 11 VVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTFVLQLHIYL 68

[Close]

BLAST of Carg15464 vs. ExPASy TrEMBL
Match: A0A6J1EXQ9 (uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC111439163 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LF+LLSPGLLFQV G   FIQFGNF+TS  SIF+HSLIFFAL CLFT VL LHIY+
Sbjct: 11 VVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTFVLQLHIYL 68

[Close]

BLAST of Carg15464 vs. ExPASy TrEMBL
Match: A0A6J1CVS1 (uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014687 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.5e-13
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V+LF+LLSPGLLFQV G  +F++FGNF TS  SIF+HSLIFFAL CLFT V+ LHIY+
Sbjct: 11 VVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTFVVQLHIYI 68

[Close]

BLAST of Carg15464 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-14
Identity = 33/58 (56.90%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          VILF++L+PGLLFQ+ G  K+++FGNF+TSA S+ +HSL++F+L C+F L L +HIY+
Sbjct: 11 VILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLLALKIHIYI 68

[Close]

BLAST of Carg15464 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-11
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIY 81
          VILF+LL+PGLLFQ+    + ++FGN +TS  SI +H++IFF L  +FT+ + LHIY
Sbjct: 11 VILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIAIRLHIY 67

[Close]

BLAST of Carg15464 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-11
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIY 81
          VILF++LSPGLLFQ+    + ++FGN +TS  SI +H++IFF L  +FT+ +++HIY
Sbjct: 11 VILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIAINVHIY 67

[Close]

BLAST of Carg15464 vs. TAIR 10
Match: AT3G01950.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-10
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIY 81
          VI FI+LSPG+LFQ+ G  K ++FG F+TS  SI +H+L+FFA   +  + LH+HIY
Sbjct: 12 VIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIALHIHIY 68

[Close]

BLAST of Carg15464 vs. TAIR 10
Match: AT5G14110.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-10
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 24 VILFILLSPGLLFQVHGADKFIQFGNFETSATSIFLHSLIFFALFCLFTLVLHLHIYV 82
          V LFI+L+PG+LFQ+ G  K ++FG F+TS  +I +H+LIFFA   +  + LH+HIYV
Sbjct: 12 VFLFIVLTPGVLFQLPGKTKVVEFGGFQTSGAAIVIHTLIFFACITVSIIALHIHIYV 69

The following BLAST results are available for this feature:

BLAST of Carg15464 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029100.1	8.1e-35	100.00	hypothetical protein SDJN02_10284 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022972134.1	5.1e-21	100.00	uncharacterized protein LOC111470766 [Cucurbita maxima]	[more]
XP_022932695.1	5.1e-21	100.00	uncharacterized protein LOC111439164 [Cucurbita moschata] >XP_023539088.1 unchar...	[more]
XP_038907108.1	7.4e-20	93.10	uncharacterized protein LOC120092931 [Benincasa hispida]	[more]
KAG7018460.1	8.2e-19	89.66	hypothetical protein SDJN02_20328, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg15464 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAL9	2.5e-21	100.00	uncharacterized protein LOC111470766 OS=Cucurbita maxima OX=3661 GN=LOC111470766...	[more]
A0A6J1F2V4	2.5e-21	100.00	uncharacterized protein LOC111439164 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1I7P7	1.5e-13	75.86	uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767...	[more]
A0A6J1EXQ9	1.5e-13	75.86	uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVS1	5.5e-13	70.69	uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Carg15464 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	4.9e-14	56.90	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	3.9e-11	52.63	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	5.1e-11	50.88	Protein of unknown function (DUF 3339)	[more]
AT3G01950.1	1.9e-10	52.63	Protein of unknown function (DUF 3339)	[more]
AT5G14110.1	3.3e-10	51.72	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 24..80 e-value: 1.1E-21 score: 76.8
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 24..81
None	No IPR available	PANTHER	PTHR33128:SF55	PROTEIN, PUTATIVE (DUF 3339)-RELATED	coord: 24..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15464-RA	Carg15464-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane