Carg15443 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15443
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	stress-associated endoplasmic reticulum protein 2-like
Location	Carg_Chr06: 10205418 .. 10205781 (+)
RNA-Seq Expression	Carg15443
Synteny	Carg15443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTTTCCTTTCTTCTTTAATCCATTCTTCTTCCTTACCTTCGATTATTTTCTCCTCTAGGGTTTTGTGTTGCAGATTTGATCTGTGGTTTGATTTTTGGATTTTGTTTCCGGATTTGATGTGATTTTCGTTTTCGATTTATGATTTTGATTTTATGGAAATTTCAGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGGCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTTTTTCCTTGCTCGCTCTTCGAGATTCTGA

mRNA sequence

ATGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGGCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTTTTTCCTTGCTCGCTCTTCGAGATTCTGA

Coding sequence (CDS)

ATGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGGCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTTTTTCCTTGCTCGCTCTTCGAGATTCTGA

Protein sequence

MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSRF

Homology

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: KAG7029119.1 (Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 6.4e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR
Sbjct: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60

Query: 61 SSRF 65
          SSRF
Sbjct: 61 SSRF 64

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_022932563.1 (stress-associated endoplasmic reticulum protein 2-like isoform X2 [Cucurbita moschata] >XP_022972333.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita maxima] >XP_023538872.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pepo] >KAG6597676.1 Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-21
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_022932562.1 (stress-associated endoplasmic reticulum protein 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 2  TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARS 61
          TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS  F + R+
Sbjct: 10 TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRT 69

Query: 62 S 63
          +
Sbjct: 70 A 70

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_038900855.1 (stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPETATKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_004152134.1 (stress-associated endoplasmic reticulum protein 2 [Cucumis sativus] >KGN53016.1 hypothetical protein Csa_015278 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPETATKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. ExPASy Swiss-Prot
Match: Q3T073 (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 13 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSR 64
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS  F + +S R
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIR 62

[Close]

BLAST of Carg15443 vs. ExPASy Swiss-Prot
Match: Q8N6R1 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 13 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSR 64
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS  F + +S R
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIR 62

[Close]

BLAST of Carg15443 vs. ExPASy Swiss-Prot
Match: Q6TAW2 (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 13 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSR 64
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS  F + +S R
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIR 62

[Close]

BLAST of Carg15443 vs. ExPASy TrEMBL
Match: A0A6J1I9M5 (stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111470902 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. ExPASy TrEMBL
Match: A0A6J1F232 (stress-associated endoplasmic reticulum protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439082 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. ExPASy TrEMBL
Match: A0A6J1EX45 (stress-associated endoplasmic reticulum protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439082 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 2  TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARS 61
          TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS  F + R+
Sbjct: 10 TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRT 69

Query: 62 S 63
          +
Sbjct: 70 A 70

[Close]

BLAST of Carg15443 vs. ExPASy TrEMBL
Match: A0A0A0KYW0 (Stress associated endoplasmic reticulum protein OS=Cucumis sativus OX=3659 GN=Csa_4G011630 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPETATKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. ExPASy TrEMBL
Match: A0A6J1IQU2 (stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111479167 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPET TKKGKDYPVGPLLLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-22
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTS+R ADRK+E+F+KNILKRG VPET TKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-22
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTS+R ADRK+E+F+KNILKRG VPET TKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

The following BLAST results are available for this feature:

BLAST of Carg15443 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029119.1	6.4e-27	100.00	Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosper...	[more]
XP_022932563.1	4.0e-21	88.71	stress-associated endoplasmic reticulum protein 2-like isoform X2 [Cucurbita mos...	[more]
XP_022932562.1	1.5e-20	88.52	stress-associated endoplasmic reticulum protein 2-like isoform X1 [Cucurbita mos...	[more]
XP_038900855.1	3.4e-20	85.48	stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida]	[more]
XP_004152134.1	3.4e-20	85.48	stress-associated endoplasmic reticulum protein 2 [Cucumis sativus] >KGN53016.1 ...	[more]

BLAST of Carg15443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T073	1.9e-05	49.02	Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2...	[more]
Q8N6R1	1.9e-05	49.02	Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER...	[more]
Q6TAW2	1.9e-05	49.02	Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se...	[more]

BLAST of Carg15443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9M5	2.0e-21	88.71	stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1F232	2.0e-21	88.71	stress-associated endoplasmic reticulum protein 2-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1EX45	7.4e-21	88.52	stress-associated endoplasmic reticulum protein 2-like isoform X1 OS=Cucurbita m...	[more]
A0A0A0KYW0	1.7e-20	85.48	Stress associated endoplasmic reticulum protein OS=Cucumis sativus OX=3659 GN=Cs...	[more]
A0A6J1IQU2	2.8e-20	85.48	stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=36...	[more]

BLAST of Carg15443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27350.1	6.6e-22	75.81	Ribosome associated membrane protein RAMP4	[more]
AT1G27330.1	6.6e-22	75.81	Ribosome associated membrane protein RAMP4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 5..56 e-value: 8.0E-20 score: 70.6
IPR010580	Stress-associated endoplasmic reticulum protein	PANTHER	PTHR15601	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4	coord: 1..62
None	No IPR available	PANTHER	PTHR15601:SF23	OS11G0637501 PROTEIN	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15443-RA	Carg15443-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane