Carg15352 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15352
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-CH-type domain-containing protein
Location	Carg_Chr03: 9405167 .. 9406623 (+)
RNA-Seq Expression	Carg15352
Synteny	Carg15352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGAGAAGAAACAGAGGGTCCTAAACCCATTGTTGATTTGGTTAATGGCGATAGGATCGAGGCCACCATTGTGGTAATCCCAGAAGGCGCCGCCTCTGCTGGCGGCACGCCGGGGACTGAACTGGTTAATCGAGAGACAAGAGAGGGTTCGAATATGAACCCATCAGAAACTGTAGTGGTTATTGATTCAGATAGAACAGCATGTGGGGTTGAAGATGGAGAATCGATTGAGAAGAAGAATGGAATGGGGTTGAGGAAGGATTTTGAAAAGAGGAATGTAAAATCGAATAAGGAGAATCCGGTGTTGATAAATGTAAGGCAAAAAGGGGGTAAAGGGTTTAATGAAGAGTGGAATGGAGAAAGGGTGTGTAGGATCTGCCATTTGGCTTCCGACCAAGCTTCAGGGGCTAAGACTGGGACCAGTACTTCAGAATTGATTCAACTTGGCTGTGACTGCAAAGATGAGCTGGGAATTTCGCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGGTTCTTCTCTCTCTCTCTCTTCTGGTTTAATGCCTTTTGCTTTAAAGCCATCGCTGCTACACCTACTTGGTTGTGAAATACCAAGTAGTCTACCCGTGAGGGTTTCCAATTCAGTTGTTCGTTGTAGCCTTGACGAACTTTAACTGGTTTTTTGGGTAGTATCCACGGTTGATAAATTGATTGTTGATTGTGAGAGAGGAATGAGTGCGAGGAAGATATGGAGCCCCAAAGGGAGTGGACACCGGATAGTGTGTCTGAGAGAACGCTGGGCACCGAAAAAGGTGGATTTTGAGATTTCACATCGATCAGAGAGAAGAATGAGTCGCTGACCCCGGTGAATTGTGATATCCCACATCAGTTGGAGAGGAACGAGGGTCAACGAGGATGCTAAGCCTCGAAGGGAGAGTGAATTGTGAGATCCCACCGGAAACAAAACATTCGGTTTATAAGTATGTAAAACTTTGTCCAGGCGTTCCTTCAACCTCTTAAGTTGAATACTAACTGTTGAGTTGAGAATGATATTTGATGGCTGATTGTGTTTGTGATATATTCAAGGATACGTTCCTGTTTCAGAGCTTTTGGCATGTCAGTTACAAAGTGCCAAAACTACGGCATGCCGATTGGAAACTCCTGCTTTTAAACTACATTGTCTTTCATATTGTGAAATGAGCTGATGGTTATCTAATCACAATGCTTATTGCTTGGCACAGAATGTGCGAAATTTGTGGCGAGACCGCAAAGAACGTCGAAGGAGTCGGGGACAACCGATTTATGGAAGAGTGGAACGAGGGAAGATCAGTAGATAGCAATGGAAACATATCAAACAGGGGTGGGAGATGTTGGAGGGGACAGCCATTCTGTAACTTCTTGATGGCATGTCTGGTAATAGCTTTTGTTCTTCCATGGTTTTTTCGTATAAACATTTTCTAG

mRNA sequence

ATGGATCGAGAAGAAACAGAGGGTCCTAAACCCATTGTTGATTTGGTTAATGGCGATAGGATCGAGGCCACCATTGTGGTAATCCCAGAAGGCGCCGCCTCTGCTGGCGGCACGCCGGGGACTGAACTGGTTAATCGAGAGACAAGAGAGGGTTCGAATATGAACCCATCAGAAACTGTAGTGGTTATTGATTCAGATAGAACAGCATGTGGGGTTGAAGATGGAGAATCGATTGAGAAGAAGAATGGAATGGGGTTGAGGAAGGATTTTGAAAAGAGGAATGTAAAATCGAATAAGGAGAATCCGGTGTTGATAAATGTAAGGCAAAAAGGGGGTAAAGGGTTTAATGAAGAGTGGAATGGAGAAAGGGTGTGTAGGATCTGCCATTTGGCTTCCGACCAAGCTTCAGGGGCTAAGACTGGGACCAGTACTTCAGAATTGATTCAACTTGGCTGTGACTGCAAAGATGAGCTGGGAATTTCGCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGAATGTGCGAAATTTGTGGCGAGACCGCAAAGAACGTCGAAGGAGTCGGGGACAACCGATTTATGGAAGAGTGGAACGAGGGAAGATCAGTAGATAGCAATGGAAACATATCAAACAGGGGTGGGAGATGTTGGAGGGGACAGCCATTCTGTAACTTCTTGATGGCATGTCTGGTAATAGCTTTTGTTCTTCCATGGTTTTTTCGTATAAACATTTTCTAG

Coding sequence (CDS)

ATGGATCGAGAAGAAACAGAGGGTCCTAAACCCATTGTTGATTTGGTTAATGGCGATAGGATCGAGGCCACCATTGTGGTAATCCCAGAAGGCGCCGCCTCTGCTGGCGGCACGCCGGGGACTGAACTGGTTAATCGAGAGACAAGAGAGGGTTCGAATATGAACCCATCAGAAACTGTAGTGGTTATTGATTCAGATAGAACAGCATGTGGGGTTGAAGATGGAGAATCGATTGAGAAGAAGAATGGAATGGGGTTGAGGAAGGATTTTGAAAAGAGGAATGTAAAATCGAATAAGGAGAATCCGGTGTTGATAAATGTAAGGCAAAAAGGGGGTAAAGGGTTTAATGAAGAGTGGAATGGAGAAAGGGTGTGTAGGATCTGCCATTTGGCTTCCGACCAAGCTTCAGGGGCTAAGACTGGGACCAGTACTTCAGAATTGATTCAACTTGGCTGTGACTGCAAAGATGAGCTGGGAATTTCGCATACTCACTGTGCTGAGGCATGGTTCAAGCTCAAAGGAAACAGAATGTGCGAAATTTGTGGCGAGACCGCAAAGAACGTCGAAGGAGTCGGGGACAACCGATTTATGGAAGAGTGGAACGAGGGAAGATCAGTAGATAGCAATGGAAACATATCAAACAGGGGTGGGAGATGTTGGAGGGGACAGCCATTCTGTAACTTCTTGATGGCATGTCTGGTAATAGCTTTTGTTCTTCCATGGTTTTTTCGTATAAACATTTTCTAG

Protein sequence

MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETVVVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWNGERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLPWFFRINIF

Homology

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BLAST of Carg15352 vs. NCBI nr
Match: KAG7034652.1 (hypothetical protein SDJN02_04382, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 510.4 bits (1313), Expect = 8.9e-141
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60
           MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV
Sbjct: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60

Query: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120
           VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN
Sbjct: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120

Query: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180
           GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI
Sbjct: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180

Query: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240
           CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP
Sbjct: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240

Query: 241 WFFRINIF 249
           WFFRINIF
Sbjct: 241 WFFRINIF 248

[Close]

BLAST of Carg15352 vs. NCBI nr
Match: XP_022926134.1 (uncharacterized protein LOC111433334 [Cucurbita moschata] >XP_022926135.1 uncharacterized protein LOC111433334 [Cucurbita moschata])

HSP 1 Score: 506.9 bits (1304), Expect = 9.8e-140
Identity = 246/248 (99.19%), Postives = 247/248 (99.60%), Query Frame = 0


Query: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60
           MDREETEGPKPIVDLVN DRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV
Sbjct: 1   MDREETEGPKPIVDLVNSDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60

Query: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120
           VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN
Sbjct: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120

Query: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180
           GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGI+HTHCAEAWFKLKGNRMCEI
Sbjct: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGITHTHCAEAWFKLKGNRMCEI 180

Query: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240
           CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP
Sbjct: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240

Query: 241 WFFRINIF 249
           WFFRINIF
Sbjct: 241 WFFRINIF 248

[Close]

BLAST of Carg15352 vs. NCBI nr
Match: XP_023544524.1 (uncharacterized protein LOC111804074 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500.4 bits (1287), Expect = 9.2e-138
Identity = 243/248 (97.98%), Postives = 245/248 (98.79%), Query Frame = 0


Query: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60
           MDREE EGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV
Sbjct: 1   MDREEPEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60

Query: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120
           VVIDSDRTACGV DGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN
Sbjct: 61  VVIDSDRTACGVVDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120

Query: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180
           GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGI+HTHCAEAWFKLKGNRMCEI
Sbjct: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGIAHTHCAEAWFKLKGNRMCEI 180

Query: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240
           CGETAKNVEGVGDN+FMEEWNEGRSVDSNGNISNRGGRCWRGQP CNFLMACLVIAFVLP
Sbjct: 181 CGETAKNVEGVGDNQFMEEWNEGRSVDSNGNISNRGGRCWRGQPLCNFLMACLVIAFVLP 240

Query: 241 WFFRINIF 249
           WFFRINIF
Sbjct: 241 WFFRINIF 248

[Close]

BLAST of Carg15352 vs. NCBI nr
Match: XP_022978751.1 (uncharacterized protein LOC111478615 [Cucurbita maxima])

HSP 1 Score: 493.0 bits (1268), Expect = 1.5e-135
Identity = 240/248 (96.77%), Postives = 242/248 (97.58%), Query Frame = 0


Query: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60
           MDREETEGPKPIVDLV+GDRIEATIVVIPEGAASAGGTP TELVNRETREGSNMNPSETV
Sbjct: 1   MDREETEGPKPIVDLVSGDRIEATIVVIPEGAASAGGTPATELVNRETREGSNMNPSETV 60

Query: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120
           VVIDSDRTACGVEDGESIEKKNGMG RKDFEKRNVKSNKENPVLINVRQKGGK FNEEWN
Sbjct: 61  VVIDSDRTACGVEDGESIEKKNGMGFRKDFEKRNVKSNKENPVLINVRQKGGKRFNEEWN 120

Query: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180
           GERVCRICHLASDQAS  KTG STSELIQLGCDCKDELGI+HTHCAEAWFKLKGNRMCEI
Sbjct: 121 GERVCRICHLASDQASEPKTGISTSELIQLGCDCKDELGIAHTHCAEAWFKLKGNRMCEI 180

Query: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240
           CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP
Sbjct: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240

Query: 241 WFFRINIF 249
           WFFRINIF
Sbjct: 241 WFFRINIF 248

[Close]

BLAST of Carg15352 vs. NCBI nr
Match: KAG6581364.1 (hypothetical protein SDJN03_21366, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 481.9 bits (1239), Expect = 3.4e-132
Identity = 233/235 (99.15%), Postives = 234/235 (99.57%), Query Frame = 0


Query: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60
           MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV
Sbjct: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60

Query: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120
           VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN
Sbjct: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120

Query: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180
           GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI
Sbjct: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180

Query: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVI 236
           CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACL +
Sbjct: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLFL 235

[Close]

BLAST of Carg15352 vs. ExPASy TrEMBL
Match: A0A6J1EK57 (uncharacterized protein LOC111433334 OS=Cucurbita moschata OX=3662 GN=LOC111433334 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 4.7e-140
Identity = 246/248 (99.19%), Postives = 247/248 (99.60%), Query Frame = 0


Query: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60
           MDREETEGPKPIVDLVN DRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV
Sbjct: 1   MDREETEGPKPIVDLVNSDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60

Query: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120
           VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN
Sbjct: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120

Query: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180
           GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGI+HTHCAEAWFKLKGNRMCEI
Sbjct: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGITHTHCAEAWFKLKGNRMCEI 180

Query: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240
           CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP
Sbjct: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240

Query: 241 WFFRINIF 249
           WFFRINIF
Sbjct: 241 WFFRINIF 248

[Close]

BLAST of Carg15352 vs. ExPASy TrEMBL
Match: A0A6J1INW7 (uncharacterized protein LOC111478615 OS=Cucurbita maxima OX=3661 GN=LOC111478615 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.1e-136
Identity = 240/248 (96.77%), Postives = 242/248 (97.58%), Query Frame = 0


Query: 1   MDREETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTPGTELVNRETREGSNMNPSETV 60
           MDREETEGPKPIVDLV+GDRIEATIVVIPEGAASAGGTP TELVNRETREGSNMNPSETV
Sbjct: 1   MDREETEGPKPIVDLVSGDRIEATIVVIPEGAASAGGTPATELVNRETREGSNMNPSETV 60

Query: 61  VVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNEEWN 120
           VVIDSDRTACGVEDGESIEKKNGMG RKDFEKRNVKSNKENPVLINVRQKGGK FNEEWN
Sbjct: 61  VVIDSDRTACGVEDGESIEKKNGMGFRKDFEKRNVKSNKENPVLINVRQKGGKRFNEEWN 120

Query: 121 GERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEI 180
           GERVCRICHLASDQAS  KTG STSELIQLGCDCKDELGI+HTHCAEAWFKLKGNRMCEI
Sbjct: 121 GERVCRICHLASDQASEPKTGISTSELIQLGCDCKDELGIAHTHCAEAWFKLKGNRMCEI 180

Query: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240
           CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP
Sbjct: 181 CGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAFVLP 240

Query: 241 WFFRINIF 249
           WFFRINIF
Sbjct: 241 WFFRINIF 248

[Close]

BLAST of Carg15352 vs. ExPASy TrEMBL
Match: A0A1S3B025 (uncharacterized protein LOC103484442 OS=Cucumis melo OX=3656 GN=LOC103484442 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.2e-106
Identity = 204/258 (79.07%), Postives = 217/258 (84.11%), Query Frame = 0


Query: 3   REETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTP-----GTEL---VNRETREGSNM 62
           R ET  PKP  DLVNGDRIEATIV+IPE AASA G       G E    VN +TREGSN+
Sbjct: 17  RVETVVPKPTNDLVNGDRIEATIVIIPESAASACGDKEAHGFGGEAIPNVNIDTREGSNL 76

Query: 63  NPSETVVVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKS----NKENPVLINVRQK 122
           NPSETV+VIDSD  A   EDGES+ K + MGLRKD EK NVKS     K+NP+LINV+ K
Sbjct: 77  NPSETVLVIDSDGAASRGEDGESLMKNSEMGLRKDLEKLNVKSKMSETKDNPMLINVKPK 136

Query: 123 GGKGFNEEWNGERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWF 182
           GGKGF ++WNGERVCRICHLAS+QAS AKTGTSTSELIQLGCDCKDELGI+H HCAEAWF
Sbjct: 137 GGKGFIDDWNGERVCRICHLASNQASEAKTGTSTSELIQLGCDCKDELGIAHGHCAEAWF 196

Query: 183 KLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLM 242
           KLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGN SNRGG CWRGQPFCNFLM
Sbjct: 197 KLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNTSNRGGGCWRGQPFCNFLM 256

Query: 243 ACLVIAFVLPWFFRINIF 249
           ACLVIAFVLPWFFRINIF
Sbjct: 257 ACLVIAFVLPWFFRINIF 274

[Close]

BLAST of Carg15352 vs. ExPASy TrEMBL
Match: A0A0A0KHW6 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519670 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.0e-106
Identity = 203/258 (78.68%), Postives = 215/258 (83.33%), Query Frame = 0


Query: 3   REETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGTP-----GTEL---VNRETREGSNM 62
           R ET  PKP  DLVNGDRIEATIV+IPE  ASAGG       G E    VN ETREGSN+
Sbjct: 17  RVETAVPKPTNDLVNGDRIEATIVIIPESLASAGGDKEAHGFGGEAIPNVNIETREGSNL 76

Query: 63  NPSETVVVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSN----KENPVLINVRQK 122
           NPSETV+VIDSD  A   EDGES+ K NGMGL KD EK NVKS     K+NP+LINV+ K
Sbjct: 77  NPSETVLVIDSDGAASRGEDGESLVKNNGMGLGKDLEKLNVKSKMSEAKDNPMLINVKPK 136

Query: 123 GGKGFNEEWNGERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWF 182
           GGKGF ++WNGERVCRICHLAS+Q S AKTGTSTSELIQLGCDCKDELGI+H HCAEAWF
Sbjct: 137 GGKGFIDDWNGERVCRICHLASNQTSEAKTGTSTSELIQLGCDCKDELGIAHGHCAEAWF 196

Query: 183 KLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLM 242
           KLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDS+GN SN GG CWRGQPFCNFLM
Sbjct: 197 KLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSSGNTSNGGGGCWRGQPFCNFLM 256

Query: 243 ACLVIAFVLPWFFRINIF 249
           ACLVIAFVLPWFFRINIF
Sbjct: 257 ACLVIAFVLPWFFRINIF 274

[Close]

BLAST of Carg15352 vs. ExPASy TrEMBL
Match: A0A6J1CL24 (uncharacterized protein LOC111012278 OS=Momordica charantia OX=3673 GN=LOC111012278 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.7e-100
Identity = 195/265 (73.58%), Postives = 207/265 (78.11%), Query Frame = 0


Query: 3   REETEGPKPIVDLVNGDRIEATIVVIPEGAASAGGT------------PGTEL---VNRE 62
           R E E PK   DLVNG++IE TIV+IPEG ASAGG              G E    V+RE
Sbjct: 17  RVEAEEPKTAADLVNGEKIETTIVIIPEGDASAGGDREAHGGTATGFGSGGEAVANVDRE 76

Query: 63  TREGSNMNPSETVVVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSN----KENPV 122
           T E  N+NPSETV+VIDSD  A G EDGES+ K NG GLRKD EK N+KS     K NP+
Sbjct: 77  TSECLNLNPSETVLVIDSDGVASGGEDGESLAKNNGTGLRKDSEKMNIKSKMSEAKYNPL 136

Query: 123 LINVRQKGGKGFNEEWNGERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHT 182
           L NV+ KGGK F E+WN ERVCRICHLASDQAS  KTGTSTSELIQLGCDCKDELGISH+
Sbjct: 137 LTNVKPKGGKAFVEDWNRERVCRICHLASDQASEPKTGTSTSELIQLGCDCKDELGISHS 196

Query: 183 HCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQ 242
           HCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRS DSNGN SNR   CWR Q
Sbjct: 197 HCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSADSNGNSSNRVEGCWRRQ 256

Query: 243 PFCNFLMACLVIAFVLPWFFRINIF 249
           PFCNFLMACLVIAFVLPWFFRINIF
Sbjct: 257 PFCNFLMACLVIAFVLPWFFRINIF 281

[Close]

BLAST of Carg15352 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.5e-26
Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 121 GERVCRICHLASDQ---ASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRM 180
           GER+CRICH  SDQ   ASG     S  ELI++GC CK+ELG++H HCAEAWFKL+GN +
Sbjct: 98  GERICRICHFGSDQSPEASGDDKSVS-PELIEIGCKCKNELGLAHFHCAEAWFKLRGNSV 157

Query: 181 CEICGETAKNVEGVGDNRFMEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACLVIAF 240
           CEICG TAKNV      R ME+W+  R    +G    RG    RGQ  C F++  L I  
Sbjct: 158 CEICGCTAKNV----TVRLMEDWSGERDNTLDGR-RRRG----RGQSCCIFMVFLLTI-L 213

Query: 241 VLPWFFR 245
           +L WFF+
Sbjct: 218 LLHWFFK 213

[Close]

BLAST of Carg15352 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-25
Identity = 69/199 (34.67%), Postives = 104/199 (52.26%), Query Frame = 0


Query: 58  ETVVVIDSDRTACGVEDGESIEKKNGMGLRKDFEKRNVKSNKENPVLINVRQKGGKGFNE 117
           ET V +    ++ G  DG+   +++   + K+ E    +  + N  + +V      G  E
Sbjct: 9   ETFVSVKVINSSSGC-DGDGEPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLELGLPE 68

Query: 118 E----WNGERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLK 177
           +       ER CRICH++ D A+  ++G      I+LGC CK +L  +H HCAE WFK+K
Sbjct: 69  KVVHLSQSERDCRICHMSLD-AANLESGVP----IELGCSCKADLAAAHKHCAETWFKIK 128

Query: 178 GNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVD-----SNGNISNRGGRCWRGQPFCNF 237
           GN++CE+CG  A NV G  +    E  NE   V+     ++G     G   W+G  F NF
Sbjct: 129 GNKICEVCGSIAGNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNF 188

Query: 238 LMACLVIAFVLPWFFRINI 248
           L+AC+V AFV+ W F  N+
Sbjct: 189 LLACMVFAFVISWLFHFNV 201

[Close]

BLAST of Carg15352 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 8.3e-20
Identity = 50/134 (37.31%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 122 ERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEIC 181
           E+ CRICHL  + +          + + LGC CKD+LG  H  CA+ WFK+KGN+ CEIC
Sbjct: 75  EKDCRICHLGLESSR-----HECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEIC 134

Query: 182 GETAKNVEGVGDNRF--------MEEWNEGRSVDSNGNISNRGGRCWRGQPFCNFLMACL 241
              A+N   V DN          +++   G +        +   R  RG  F NFL+ C+
Sbjct: 135 RSIAQNFFKV-DNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLTCM 194

Query: 242 VIAFVLPWFFRINI 248
           V AFV+ WFF  N+
Sbjct: 195 VCAFVISWFFHFNL 202

[Close]

BLAST of Carg15352 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-19
Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 122 ERVCRICHLASDQASGAKTGTSTSELIQLGCDCKDELGISHTHCAEAWFKLKGNRMCEIC 181
           E+ CRICHL  + + G          I+LGC CKD+L ++H  CAE WFK+KG++ CEIC
Sbjct: 81  EKDCRICHLGVETSGGG--------AIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEIC 140

Query: 182 GETAKNVEGVG-------DNRFMEEWNEGRSVDSNGN--ISNRGGRCWRGQPFCNFLMAC 241
              A+NV G         + R +    E  + +  G   + NR    W+ Q   N ++AC
Sbjct: 141 QSVARNVGGANEMVGSTMEERELRNGEETAAGEGGGATVVENR----WQPQRVVNLVLAC 200

Query: 242 LVIAFVLPWFFRINI 248
           +V  F + W F  ++
Sbjct: 201 MVFGFFISWIFHFHV 203

[Close]

BLAST of Carg15352 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-19
Identity = 41/100 (41.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 148 IQLGCDCKDELGISHTHCAEAWFKLKGNRMCEICGETAKNVEGVGDNRFMEEWNEGRSVD 207
           +QLGC CK +LG++H+ CAE WFK+KGN  CEICG  A NV G   N         ++  
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAA 189

Query: 208 SNGNISNRGGRCWRGQPFCNFLMACLVIAFVLPWFFRINI 248
                       W G+P  NFL+A +V AFV+ W F   +
Sbjct: 190 GQSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

The following BLAST results are available for this feature:

BLAST of Carg15352 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034652.1	8.9e-141	100.00	hypothetical protein SDJN02_04382, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022926134.1	9.8e-140	99.19	uncharacterized protein LOC111433334 [Cucurbita moschata] >XP_022926135.1 unchar...	[more]
XP_023544524.1	9.2e-138	97.98	uncharacterized protein LOC111804074 [Cucurbita pepo subsp. pepo]	[more]
XP_022978751.1	1.5e-135	96.77	uncharacterized protein LOC111478615 [Cucurbita maxima]	[more]
KAG6581364.1	3.4e-132	99.15	hypothetical protein SDJN03_21366, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg15352 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EK57	4.7e-140	99.19	uncharacterized protein LOC111433334 OS=Cucurbita moschata OX=3662 GN=LOC1114333...	[more]
A0A6J1INW7	7.1e-136	96.77	uncharacterized protein LOC111478615 OS=Cucurbita maxima OX=3661 GN=LOC111478615...	[more]
A0A1S3B025	1.2e-106	79.07	uncharacterized protein LOC103484442 OS=Cucumis melo OX=3656 GN=LOC103484442 PE=...	[more]
A0A0A0KHW6	2.0e-106	78.68	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51967...	[more]
A0A6J1CL24	3.7e-100	73.58	uncharacterized protein LOC111012278 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of Carg15352 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34200.1	3.5e-26	51.97	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	1.7e-25	34.67	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	8.3e-20	37.31	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	1.4e-19	34.81	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	5.4e-19	41.00	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 124..182 e-value: 2.0E-12 score: 57.3
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 125..181 e-value: 7.3E-7 score: 29.2
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 117..188 score: 17.199425
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 110..192 e-value: 4.1E-15 score: 57.1
None	No IPR available	PANTHER	PTHR46214:SF8	OS01G0731800 PROTEIN	coord: 46..248
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 46..248
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 121..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15352-RA	Carg15352-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding