Carg15347 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15347
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	myb family transcription factor EFM-like
Location	Carg_Chr03: 9381559 .. 9382784 (-)
RNA-Seq Expression	Carg15347
Synteny	Carg15347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCCCAGAAACTTGTTGATGAATTTTCGAGACCGACGGAGACGGAGTCGGACCGATGAAGGCGGAGCGGAAGAGAAGTTGAATCCATTGACCTCATCAAGAAAGTGGTCATTGTTTGATTTGAACGAGGAGGCCAGGGTTGAAGATGGTGATCATAACATTAGTGTAGAAGTTGAGCAAAATGAAGAAAGAAAGCATGGACGAAGTTCAACAAAGCATAATAACAATGAGAATACAAATAACTCATCAAGAGAAGAAGGAAATGGAGGAAGAAGAAGAAGAAGAACAGCAGTGAGACAGTATGTTAGATCTAAAGTGCCTCGCCTGCGTTGGACTCCTGAGCTTCATCTCAACTTTGTTCATGCCGTTCAAAGGCTCGGTGGCCAAGAGAGTAATAACAATCATTATTCCTTCTTTTCAACTAAGTTATAATAAACTTCAATTTGTTATAATAATCTATGATTGTAGGAGCAACACCCAAGTTGGTTCTTCAGCTGATGAATGTAAAAGGACTTAGCATTGCCCATGTCAAAAGCCATTTACAGGTACCCATCTGCTTTTCATAATTTGATGAGTTTTTTCGCTCTCAACAACACTAACTGACCACATAGGACGCATTGAATTTTCAGATGTATAGAAGCAAGAAGCTTGACCAAACAGGGCAAGGTACAAATAAGCATAAGCAACTGTTCATAATTCAATATCATAAAGTGGTTATGCAACTTTGTTTGTTTTTGTCCGTAATAGTTATAGGAGAAGCATGGGCAGGTGGGGTGATGCAAGGAGGTGGGGGATACTACAACAACAACAACAACAATAAGAATGGCGGCAGGGTGAGCCACCATTATTCTCGTTGGCACTTCCATATCCAGTTTGGAAGTGTTGCAAAACTGTTACCCTCAAACTCACCCTATGATCCAACGAGTTGTCATGCAAAGACAAGGCAGCTGAGGAGACCAAATCATTGTCGGGAACCAGAGCTGGAGCTAGGACTGAGGCAGACGACGACAACAACAACAAAGAGTATTAGTAGTAGTAGTAGTAGTGATAAAGAGAGTTGGGGATGTGGCTTACGGATTACCACTGACCTTTCCCTTTCTTGAAGCTAAGGCCACAGGCTGATTATAGAATAATGTGGTCTCTTATTGCAAAAAATCAGTGATAATTGAGGTCTCTGGTTGTTTGAGTTTGGGGCCATTGGCATTGCCATTCATTGCATTACATAA

mRNA sequence

TATCCCAGAAACTTGTTGATGAATTTTCGAGACCGACGGAGACGGAGTCGGACCGATGAAGGCGGAGCGGAAGAGAAGTTGAATCCATTGACCTCATCAAGAAAGTGGTCATTGTTTGATTTGAACGAGGAGGCCAGGGTTGAAGATGGTGATCATAACATTAGTGTAGAAGTTGAGCAAAATGAAGAAAGAAAGCATGGACGAAGTTCAACAAAGCATAATAACAATGAGAATACAAATAACTCATCAAGAGAAGAAGGAAATGGAGGAAGAAGAAGAAGAAGAACAGCAGTGAGACAGTATGTTAGATCTAAAGTGCCTCGCCTGCGTTGGACTCCTGAGCTTCATCTCAACTTTGTTCATGCCGTTCAAAGGCTCGGTGGCCAAGAGAGAGCAACACCCAAGTTGGTTCTTCAGCTGATGAATGTAAAAGGACTTAGCATTGCCCATGTCAAAAGCCATTTACAGATGTATAGAAGCAAGAAGCTTGACCAAACAGGGCAAGTTATAGGAGAAGCATGGGCAGGTGGGGTGATGCAAGGAGGTGGGGGATACTACAACAACAACAACAACAATAAGAATGGCGGCAGGTTTGGGGCCATTGGCATTGCCATTCATTGCATTACATAA

Coding sequence (CDS)

TATCCCAGAAACTTGTTGATGAATTTTCGAGACCGACGGAGACGGAGTCGGACCGATGAAGGCGGAGCGGAAGAGAAGTTGAATCCATTGACCTCATCAAGAAAGTGGTCATTGTTTGATTTGAACGAGGAGGCCAGGGTTGAAGATGGTGATCATAACATTAGTGTAGAAGTTGAGCAAAATGAAGAAAGAAAGCATGGACGAAGTTCAACAAAGCATAATAACAATGAGAATACAAATAACTCATCAAGAGAAGAAGGAAATGGAGGAAGAAGAAGAAGAAGAACAGCAGTGAGACAGTATGTTAGATCTAAAGTGCCTCGCCTGCGTTGGACTCCTGAGCTTCATCTCAACTTTGTTCATGCCGTTCAAAGGCTCGGTGGCCAAGAGAGAGCAACACCCAAGTTGGTTCTTCAGCTGATGAATGTAAAAGGACTTAGCATTGCCCATGTCAAAAGCCATTTACAGATGTATAGAAGCAAGAAGCTTGACCAAACAGGGCAAGTTATAGGAGAAGCATGGGCAGGTGGGGTGATGCAAGGAGGTGGGGGATACTACAACAACAACAACAACAATAAGAATGGCGGCAGGTTTGGGGCCATTGGCATTGCCATTCATTGCATTACATAA

Protein sequence

YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQNEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQGGGGYYNNNNNNKNGGRFGAIGIAIHCIT

Homology

[Close]

BLAST of Carg15347 vs. NCBI nr
Match: KAG7034647.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 408.7 bits (1049), Expect = 3.1e-110
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60
           YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ
Sbjct: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60

Query: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 120
           NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV
Sbjct: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 120

Query: 121 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ 180
           HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ
Sbjct: 121 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ 180

Query: 181 GGGGYYNNNNNNKNGGRFGAIGIAIHCIT 210
           GGGGYYNNNNNNKNGGRFGAIGIAIHCIT
Sbjct: 181 GGGGYYNNNNNNKNGGRFGAIGIAIHCIT 209

[Close]

BLAST of Carg15347 vs. NCBI nr
Match: XP_022925976.1 (myb family transcription factor EFM-like [Cucurbita moschata])

HSP 1 Score: 379.0 bits (972), Expect = 2.6e-101
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60
           YPRNLL+NFRDRRRRSRTDEG AEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ
Sbjct: 2   YPRNLLLNFRDRRRRSRTDEGVAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 61

Query: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 120
           NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV
Sbjct: 62  NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 121

Query: 121 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ 180
           HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ
Sbjct: 122 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ 181

Query: 181 GGGGYYNNNNNNKNGGR 198
           GGGGYYNNNNNNKNGGR
Sbjct: 182 GGGGYYNNNNNNKNGGR 198

[Close]

BLAST of Carg15347 vs. NCBI nr
Match: XP_023543937.1 (uncharacterized protein LOC111803659 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.0 bits (881), Expect = 9.3e-91
Identity = 186/204 (91.18%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEG-GAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVE 60
           YPRNLL+NFRDRRR SRTDEG  AEEKLNPLT SRKWSLFDLNEEARVEDGDHNISVEVE
Sbjct: 39  YPRNLLLNFRDRRRWSRTDEGVAAEEKLNPLTLSRKWSLFDLNEEARVEDGDHNISVEVE 98

Query: 61  QNEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNF 120
           Q+EERKHG +STKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNF
Sbjct: 99  QSEERKHGLTSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNF 158

Query: 121 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHL------QMYRSKKLDQTGQVIGEA 180
           VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHL      QMYRSKKLDQTGQVIGEA
Sbjct: 159 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQEALNFQMYRSKKLDQTGQVIGEA 218

Query: 181 WAGGVMQGGGGYYNNNNNNKNGGR 198
           WAGGVMQGGGGY+   NNNKNGGR
Sbjct: 219 WAGGVMQGGGGYH---NNNKNGGR 239

[Close]

BLAST of Carg15347 vs. NCBI nr
Match: KAG6581360.1 (Plant cysteine oxidase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343.6 bits (880), Expect = 1.2e-90
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60
           YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ
Sbjct: 249 YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 308

Query: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 120
           NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV
Sbjct: 309 NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 368

Query: 121 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGG 178
           HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGG
Sbjct: 369 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGG 425

[Close]

BLAST of Carg15347 vs. NCBI nr
Match: XP_022978771.1 (probable transcription factor KAN3 [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 6.0e-82
Identity = 164/169 (97.04%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60
           YPRNLL+NFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDH+ISVEVEQ
Sbjct: 2   YPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVEQ 61

Query: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGG-RRRRRTAVRQYVRSKVPRLRWTPELHLNF 120
           NEERKHGR+S+KHNNNENTNNSSREEGNGG RRRRRTAVRQYVRSKVPRLRWTPELHLNF
Sbjct: 62  NEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLNF 121

Query: 121 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 169
           VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ
Sbjct: 122 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 170

[Close]

BLAST of Carg15347 vs. ExPASy Swiss-Prot
Match: A3AWH5 (Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOF1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 89  GGRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSI 148
           GG   R  AVRQY+RSKVPRLRWT ELH +FV A++ LGGQ++ATPKL+LQLM VKGL+I
Sbjct: 5   GGGCGRNGAVRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTI 64

Query: 149 AHVKSHLQMYRSKKLDQTG 168
           +HVKSHLQMYR  +L   G
Sbjct: 65  SHVKSHLQMYRCSRLGSHG 83

[Close]

BLAST of Carg15347 vs. ExPASy Swiss-Prot
Match: Q700D9 (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-22
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 98  VRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQM 157
           VR YVRS VPRLRWTPELH +FVHAV  LGGQ +ATPKLVL++M+VKGL+I+HVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 158 YRSKKLDQTGQ 169
           YR  ++   G+
Sbjct: 75  YRGSRITLLGK 85

[Close]

BLAST of Carg15347 vs. ExPASy Swiss-Prot
Match: A0A0P0X0C0 (Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN=MPH1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 89  GGRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSI 148
           GG  RR   VRQY RS+VPR+RWT E+H  FV AV+ LGGQ+ ATPK +LQLM VKG+SI
Sbjct: 2   GGFERR--GVRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSI 61

Query: 149 AHVKSHLQMYRS 161
           +H+KSHLQMYRS
Sbjct: 62  SHIKSHLQMYRS 71

[Close]

BLAST of Carg15347 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 105 KVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLD 164
           + PR+RWT  LH +FVHAVQ LGG ERATPK VL+LMNVK L++AHVKSHLQMYR+ K  
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163

Query: 165 QTGQVIGEAWAGGVMQGGGGYYNNNNNNK 194
             G   GE   G V +       +NNNN+
Sbjct: 164 DKGSP-GE---GKVEKEAEQRIEDNNNNE 188

[Close]

BLAST of Carg15347 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-16
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 105 KVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS-KKL 164
           + PR+RWT  LH  FVHAV+ LGG ERATPK VL+LM+VK L++AHVKSHLQMYR+ K  
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKST 382

Query: 165 DQTGQVIG--------EAWAGGVMQGGGGYYNNNNNNKNGGRFGAIGIAIH 207
           D+     G        E +AGG     GG  +       GG   A   A H
Sbjct: 383 DKPAASSGPADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEH 433

[Close]

BLAST of Carg15347 vs. ExPASy TrEMBL
Match: A0A6J1EDL8 (myb family transcription factor EFM-like OS=Cucurbita moschata OX=3662 GN=LOC111433231 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60
           YPRNLL+NFRDRRRRSRTDEG AEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ
Sbjct: 2   YPRNLLLNFRDRRRRSRTDEGVAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 61

Query: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 120
           NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV
Sbjct: 62  NEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFV 121

Query: 121 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ 180
           HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ
Sbjct: 122 HAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAGGVMQ 181

Query: 181 GGGGYYNNNNNNKNGGR 198
           GGGGYYNNNNNNKNGGR
Sbjct: 182 GGGGYYNNNNNNKNGGR 198

[Close]

BLAST of Carg15347 vs. ExPASy TrEMBL
Match: A0A6J1INY7 (probable transcription factor KAN3 OS=Cucurbita maxima OX=3661 GN=LOC111478632 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.9e-82
Identity = 164/169 (97.04%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVEQ 60
           YPRNLL+NFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDH+ISVEVEQ
Sbjct: 2   YPRNLLLNFRDRRRRSRTDEGGAEEKLNPLTSSRKWSLFDLNEEARVEDGDHDISVEVEQ 61

Query: 61  NEERKHGRSSTKHNNNENTNNSSREEGNGG-RRRRRTAVRQYVRSKVPRLRWTPELHLNF 120
           NEERKHGR+S+KHNNNENTNNSSREEGNGG RRRRRTAVRQYVRSKVPRLRWTPELHLNF
Sbjct: 62  NEERKHGRTSSKHNNNENTNNSSREEGNGGRRRRRRTAVRQYVRSKVPRLRWTPELHLNF 121

Query: 121 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 169
           VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ
Sbjct: 122 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 170

[Close]

BLAST of Carg15347 vs. ExPASy TrEMBL
Match: A0A1S3B068 (transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484447 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.5e-66
Identity = 148/195 (75.90%), Postives = 160/195 (82.05%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGA-EEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVE 60
           Y  NLL+NFRDRR+RSR+DE GA EEKLNPL  SRKWSLFDLNEEA VED D     E+E
Sbjct: 11  YCSNLLLNFRDRRKRSRSDENGAVEEKLNPLMPSRKWSLFDLNEEASVEDDDEMTIEEIE 70

Query: 61  QNEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNF 120
           QNEERK+  SS   NNNEN +N++    N G   RRTAVRQYVRSKVPRLRWTPELHLNF
Sbjct: 71  QNEERKYENSSA--NNNENNSNNNNNNNNNG---RRTAVRQYVRSKVPRLRWTPELHLNF 130

Query: 121 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAG--- 180
           VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQ+GQVI EA  G   
Sbjct: 131 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQSGQVIREACDGMRM 190

Query: 181 GVMQGGGGYYNNNNN 192
           G+M GGG YYN+N+N
Sbjct: 191 GLMHGGGRYYNSNSN 200

[Close]

BLAST of Carg15347 vs. ExPASy TrEMBL
Match: A0A1S3AZG9 (transcription factor stalky-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484447 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.5e-66
Identity = 148/195 (75.90%), Postives = 160/195 (82.05%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGA-EEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVE 60
           Y  NLL+NFRDRR+RSR+DE GA EEKLNPL  SRKWSLFDLNEEA VED D     E+E
Sbjct: 11  YCSNLLLNFRDRRKRSRSDENGAVEEKLNPLMPSRKWSLFDLNEEASVEDDDEMTIEEIE 70

Query: 61  QNEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNF 120
           QNEERK+  SS   NNNEN +N++    N G   RRTAVRQYVRSKVPRLRWTPELHLNF
Sbjct: 71  QNEERKYENSSA--NNNENNSNNNNNNNNNG---RRTAVRQYVRSKVPRLRWTPELHLNF 130

Query: 121 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAG--- 180
           VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQ+GQVI EA  G   
Sbjct: 131 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQSGQVIREACDGMRM 190

Query: 181 GVMQGGGGYYNNNNN 192
           G+M GGG YYN+N+N
Sbjct: 191 GLMHGGGRYYNSNSN 200

[Close]

BLAST of Carg15347 vs. ExPASy TrEMBL
Match: A0A0A0KHW1 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519620 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.5e-66
Identity = 148/195 (75.90%), Postives = 161/195 (82.56%), Query Frame = 0


Query: 1   YPRNLLMNFRDRRRRSRTDEGGA-EEKLNPLTSSRKWSLFDLNEEARVEDGDHNISVEVE 60
           Y  NLL+NFRDRR+RSR+DE GA EEKLN L  SRKWSLFDLNEEA VEDGD     E+E
Sbjct: 11  YCSNLLLNFRDRRKRSRSDESGAVEEKLNALMPSRKWSLFDLNEEASVEDGDEMTIEEIE 70

Query: 61  QNEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNF 120
           QNEERK+  SST  NNNEN ++++    N G   RRTAVRQYVRSKVPRLRWTPELHLNF
Sbjct: 71  QNEERKYENSST--NNNENNSDNNNNNNNNG---RRTAVRQYVRSKVPRLRWTPELHLNF 130

Query: 121 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQVIGEAWAG--- 180
           VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQ+GQVI EA  G   
Sbjct: 131 VHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQSGQVIREACDGIRM 190

Query: 181 GVMQGGGGYYNNNNN 192
           G+M GGG YYN+N+N
Sbjct: 191 GLMHGGGRYYNSNSN 200

[Close]

BLAST of Carg15347 vs. TAIR 10
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-30
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 50  GDHNISVEVEQNEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRL 109
           G  N   E E+ EE + G  S      + ++NS+ EE +     ++T VR YVRSKVPRL
Sbjct: 9   GKTNREEEEEEEEEEEEGEES------KVSSNSTVEESD-----KKTKVRPYVRSKVPRL 68

Query: 110 RWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQV 169
           RWTP+LHL FV AV+RLGGQERATPKLV Q+MN+KGLSIAHVKSHLQMYRSKK+D  GQ 
Sbjct: 69  RWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRSKKIDDQGQA 118

Query: 170 I 171
           I
Sbjct: 129 I 118

[Close]

BLAST of Carg15347 vs. TAIR 10
Match: AT2G40260.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26
Identity = 75/141 (53.19%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 48  EDGDHNISVEVEQNEERKHGRSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVP 107
           ED D     E E++EE + G  S   N+ E  + S   + N   ++   +VR Y RSK P
Sbjct: 27  EDKDEEDDEEGEEDEEERSGDQSPSSNSYEEESGSHHHDQN---KKNGGSVRPYNRSKTP 86

Query: 108 RLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTG 167
           RLRWTPELH+ F+ AV+RLGG +RATPKLVLQLMNVKGLSIAHVKSHLQMYRSKK D+  
Sbjct: 87  RLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKTDEP- 146

Query: 168 QVIGEAWAGGVMQGGGGYYNN 189
               E   G   + G GY  N
Sbjct: 147 ---NEGDQGFSFEHGAGYTYN 160

[Close]

BLAST of Carg15347 vs. TAIR 10
Match: AT2G42660.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-25
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 68  RSSTKHNNNENTNNSSREEGNGGRRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLG 127
           R  T   NNE  ++   E+      +    VRQY+RS +PRLRWTP+LHL+FV AVQRLG
Sbjct: 18  REETVEKNNEEESSVEDED------QITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLG 77

Query: 128 GQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDQTGQ 169
           G +RATPKLVL++MN+KGLSIAHVKSHLQMYRSKKL+ + +
Sbjct: 78  GPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRSKKLEPSSR 112

[Close]

BLAST of Carg15347 vs. TAIR 10
Match: AT1G14600.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 98  VRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQM 157
           VR YVRS VPRLRWTPELH +FVHAV  LGGQ +ATPKLVL++M+VKGL+I+HVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 158 YRSKKLDQTGQ 169
           YR  ++   G+
Sbjct: 75  YRGSRITLLGK 85

[Close]

BLAST of Carg15347 vs. TAIR 10
Match: AT2G02060.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-22
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 82  SSREEGNGG-RRRRRTAVRQYVRSKVPRLRWTPELHLNFVHAVQRLGGQERATPKLVLQL 141
           SS   GNG     +   VR YVRS VPRLRWTP+LH  FVHAV+ LGGQ RATPKLVL++
Sbjct: 4   SSGRNGNGSFNGNKFHGVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKM 63

Query: 142 MNVKGLSIAHVKSHLQMYR 160
           M+VKGL+I+HVKSHLQMYR
Sbjct: 64  MDVKGLTISHVKSHLQMYR 82

The following BLAST results are available for this feature:

BLAST of Carg15347 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034647.1	3.1e-110	100.00	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022925976.1	2.6e-101	98.98	myb family transcription factor EFM-like [Cucurbita moschata]	[more]
XP_023543937.1	9.3e-91	91.18	uncharacterized protein LOC111803659 [Cucurbita pepo subsp. pepo]	[more]
KAG6581360.1	1.2e-90	100.00	Plant cysteine oxidase 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022978771.1	6.0e-82	97.04	probable transcription factor KAN3 [Cucurbita maxima]	[more]

BLAST of Carg15347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A3AWH5	2.3e-23	68.35	Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q700D9	3.3e-22	70.42	Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=37...	[more]
A0A0P0X0C0	1.2e-19	68.06	Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9FJV5	2.4e-17	57.30	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q0J235	2.7e-16	47.75	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]

BLAST of Carg15347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDL8	1.3e-101	98.98	myb family transcription factor EFM-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1INY7	2.9e-82	97.04	probable transcription factor KAN3 OS=Cucurbita maxima OX=3661 GN=LOC111478632 P...	[more]
A0A1S3B068	6.5e-66	75.90	transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3AZG9	6.5e-66	75.90	transcription factor stalky-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A0A0KHW1	8.5e-66	75.90	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51962...	[more]

BLAST of Carg15347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38300.1	2.0e-30	61.16	myb-like HTH transcriptional regulator family protein	[more]
AT2G40260.1	1.3e-26	53.19	Homeodomain-like superfamily protein	[more]
AT2G42660.1	1.5e-25	60.40	Homeodomain-like superfamily protein	[more]
AT1G14600.1	2.3e-23	70.42	Homeodomain-like superfamily protein	[more]
AT2G02060.1	7.5e-22	68.35	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 109..159 e-value: 3.1E-8 score: 33.7
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 103..163 score: 13.824917
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 107..162 e-value: 1.9E-23 score: 80.5
None	No IPR available	GENE3D	1.10.10.60		coord: 106..163 e-value: 2.3E-26 score: 93.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..96
None	No IPR available	PANTHER	PTHR31314:SF2	MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN	coord: 55..173
IPR044848	PHR1-like	PANTHER	PTHR31314	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	coord: 55..173
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 105..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15347-RA	Carg15347-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity