Carg15339 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15339
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L34, chloroplastic
Location	Carg_Chr03: 9357548 .. 9358464 (+)
RNA-Seq Expression	Carg15339
Synteny	Carg15339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATACGCGTTCCCTCAGCTTCTCTTGTATTCTCCGCCGCTTCTACGGGTTGCTGCTCCGTATCTCTTAATACCGCCAACTACACTGCCGCCCGTTCTGGACTGCTCCATTCTTCATTTCTTACATCTTCCTCCCTTTCGTGCTCTTCATCTTTTGCAGGTGAGGACTTTATACTCTCAAATTTCTGTATCATTCGAGTAACTTTATGATTTCCCATTATTGCTTGCTCATTTGCCAATGTGATGGAGTCTACAGCAGTTCACTGAAGTATTTATTTGCTGTCGTGTGCGTTTATCATTTTCTAGGCCCTTGCATTTCGAATTCTATACATTCAAGCTCGTTTGATTTAATAATTTCTCGGTTGGTAATGGCATAATTTGTCGGTGGTCGATTTCTGCTTACATTTGATTTGTTATGACTACTCTCTTATTTTTCTTTCCGTGATTTCCAGTAATCGAATTGTTAGTGAAAAAGTTGCTGGTGGCTGCATATCTCCATTTTTTATATTACTAATAATCCATTGCGTTTCACATGTTGAGGGGAATATAAAAGAACATGCACCCTCTACTGCAACATTGCGGAGCTTCTCTTACGATACTTAGTTCTATCCACCAAGATTTTGTAATATTTATTTTATGGGAATGCACACATTTGCAGGCTCATCTTTGTGTTTGGATTGGAGCTCTAAGATTGGGGTCGGCAAGGGAAGCGTCGGAGCTTAGTGGTGAGGGCTGGCAAGGCTGCAATATGTCAGACGAAACAAAACAGATCACGTAAATCCTTAGCTTGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGTAGAGCTGTCCTAAAGTGCAGACGTGCCAAGGATAGGAAGGTCCTCTGCACGAAATCCAACCCAAGCAGTGGAAAGGGTGCTTAA

mRNA sequence

ATGCCCATACGCGTTCCCTCAGCTTCTCTTGTATTCTCCGCCGCTTCTACGGGTTGCTGCTCCGTATCTCTTAATACCGCCAACTACACTGCCGCCCGTTCTGGACTGCTCCATTCTTCATTTCTTACATCTTCCTCCCTTTCGTGCTCTTCATCTTTTGCAGATTGGGGTCGGCAAGGGAAGCGTCGGAGCTTAGTGGTGAGGGCTGGCAAGGCTGCAATATGTCAGACGAAACAAAACAGATCACGTAAATCCTTAGCTTGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGTAGAGCTGTCCTAAAGTGCAGACGTGCCAAGGATAGGAAGGTCCTCTGCACGAAATCCAACCCAAGCAGTGGAAAGGGTGCTTAA

Coding sequence (CDS)

ATGCCCATACGCGTTCCCTCAGCTTCTCTTGTATTCTCCGCCGCTTCTACGGGTTGCTGCTCCGTATCTCTTAATACCGCCAACTACACTGCCGCCCGTTCTGGACTGCTCCATTCTTCATTTCTTACATCTTCCTCCCTTTCGTGCTCTTCATCTTTTGCAGATTGGGGTCGGCAAGGGAAGCGTCGGAGCTTAGTGGTGAGGGCTGGCAAGGCTGCAATATGTCAGACGAAACAAAACAGATCACGTAAATCCTTAGCTTGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGTAGAGCTGTCCTAAAGTGCAGACGTGCCAAGGATAGGAAGGTCCTCTGCACGAAATCCAACCCAAGCAGTGGAAAGGGTGCTTAA

Protein sequence

MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

Homology

[Close]

BLAST of Carg15339 vs. NCBI nr
Match: KAG7034639.1 (50S ribosomal protein L34, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQG 60
           MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQG
Sbjct: 1   MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQG 60

Query: 61  KRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAKDRKVLCTKS 120
           KRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAKDRKVLCTKS
Sbjct: 61  KRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAKDRKVLCTKS 120

Query: 121 NPSSGKGA 129
           NPSSGKGA
Sbjct: 121 NPSSGKGA 128

[Close]

BLAST of Carg15339 vs. NCBI nr
Match: XP_038883793.1 (50S ribosomal protein L34, chloroplastic [Benincasa hispida])

HSP 1 Score: 181.0 bits (458), Expect = 6.4e-42
Identity = 106/137 (77.37%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DW 62
           +RVPSASLV S    GCCSVSLNTAN T+ARSGLLH SFL+SSSLSCSSSF+      DW
Sbjct: 19  VRVPSASLVISTGFRGCCSVSLNTANNTSARSGLLHCSFLSSSSLSCSSSFSGLSLGLDW 78

Query: 63  GR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
                  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTTNGRAVLK RRAK
Sbjct: 79  SSKIGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKSNPSSGK A
Sbjct: 139 GRKVLCTKSNPSSGKRA 155

[Close]

BLAST of Carg15339 vs. NCBI nr
Match: XP_008439748.1 (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 50S ribosomal protein L34 [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-41
Identity = 106/137 (77.37%), Postives = 111/137 (81.02%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DW 62
           +RVPSASLV S  S G CSVSLNTAN T+ARSGLLH SFL SSSLSCSSSF+      DW
Sbjct: 19  VRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDW 78

Query: 63  GR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
                  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTTNGRAVLK RRAK
Sbjct: 79  SSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKSNPSSGK A
Sbjct: 139 GRKVLCTKSNPSSGKRA 155

[Close]

BLAST of Carg15339 vs. NCBI nr
Match: XP_004134668.1 (50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypothetical protein Csa_003653 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 104/137 (75.91%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DW 62
           +RVPSASLVFS  S G CSVSLNT N  +ARSGLLH SFL SSSLSCSSSF+      DW
Sbjct: 19  VRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDW 78

Query: 63  GR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
                  QGK R LVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTTNGRAVLK RRAK
Sbjct: 79  SSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKSNPSSGK A
Sbjct: 139 GRKVLCTKSNPSSGKRA 155

[Close]

BLAST of Carg15339 vs. NCBI nr
Match: XP_022142342.1 (50S ribosomal protein L34, chloroplastic [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 103/137 (75.18%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFAD------- 62
           +RVPSASLV S  S  CCSVSLNTAN T+ARSGLL  SFL SSSLSCSSSF+        
Sbjct: 19  VRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDW 78

Query: 63  ----WGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
               W  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTT+GRAVLK RRAK
Sbjct: 79  NSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKS PSSGKGA
Sbjct: 139 GRKVLCTKSYPSSGKGA 155

[Close]

BLAST of Carg15339 vs. ExPASy Swiss-Prot
Match: Q9LP37 (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-22
Identity = 79/138 (57.25%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADW------ 62
           I VPSASL   +  TGC   S +    ++A S LLH SFL SS +S +S F+        
Sbjct: 26  ICVPSASL---SLRTGCRRSSSSLT--SSASSQLLHCSFL-SSPVSLASPFSGLSIAFDL 85

Query: 63  -----GRQG-KRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRA 122
                G  G +RR LVVRAGKAA+CQTK++RSRKSLA THGFRRRMRTT+GRA +K RRA
Sbjct: 86  SSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRA 145

Query: 123 KDRKVLCTKSNPSSGKGA 129
           K R  LC KSNPSSGK A
Sbjct: 146 KGRWNLCPKSNPSSGKRA 157

[Close]

BLAST of Carg15339 vs. ExPASy Swiss-Prot
Match: P82244 (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-22
Identity = 78/136 (57.35%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 4   RVPSASLVFSAAS-TGCCSVSLNTANYTAARSGLLHSSFLT-SSSLSCSSSFADWG---- 63
           R PSASL F   S T    VS N     +ARSG LH SFL  SSSLS + S    G    
Sbjct: 18  RTPSASLTFITGSRTTNKRVSFNGG---SARSGSLHCSFLAPSSSLSSNFSGLSLGLDLT 77

Query: 64  -----RQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAKD 123
                   + R  VVRAGKAA+C TK++RSRKSLA THGFR RM TT+GRA+LK RRAK 
Sbjct: 78  SNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKG 137

Query: 124 RKVLCTKSNPSSGKGA 129
           RK+LCTK+NPSSGK A
Sbjct: 138 RKILCTKTNPSSGKRA 150

[Close]

BLAST of Carg15339 vs. ExPASy TrEMBL
Match: A0A5D3CSJ7 (50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008120 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 106/137 (77.37%), Postives = 111/137 (81.02%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DW 62
           +RVPSASLV S  S G CSVSLNTAN T+ARSGLLH SFL SSSLSCSSSF+      DW
Sbjct: 19  VRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDW 78

Query: 63  GR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
                  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTTNGRAVLK RRAK
Sbjct: 79  SSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKSNPSSGK A
Sbjct: 139 GRKVLCTKSNPSSGKRA 155

[Close]

BLAST of Carg15339 vs. ExPASy TrEMBL
Match: A0A1S3AZG6 (50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 106/137 (77.37%), Postives = 111/137 (81.02%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DW 62
           +RVPSASLV S  S G CSVSLNTAN T+ARSGLLH SFL SSSLSCSSSF+      DW
Sbjct: 19  VRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDW 78

Query: 63  GR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
                  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTTNGRAVLK RRAK
Sbjct: 79  SSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKSNPSSGK A
Sbjct: 139 GRKVLCTKSNPSSGKRA 155

[Close]

BLAST of Carg15339 vs. ExPASy TrEMBL
Match: A0A0A0KI92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 104/137 (75.91%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DW 62
           +RVPSASLVFS  S G CSVSLNT N  +ARSGLLH SFL SSSLSCSSSF+      DW
Sbjct: 19  VRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDW 78

Query: 63  GR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
                  QGK R LVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTTNGRAVLK RRAK
Sbjct: 79  SSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKSNPSSGK A
Sbjct: 139 GRKVLCTKSNPSSGKRA 155

[Close]

BLAST of Carg15339 vs. ExPASy TrEMBL
Match: A0A6J1CMH5 (50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012484 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 103/137 (75.18%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFAD------- 62
           +RVPSASLV S  S  CCSVSLNTAN T+ARSGLL  SFL SSSLSCSSSF+        
Sbjct: 19  VRVPSASLVISTGSRSCCSVSLNTANNTSARSGLLRCSFLPSSSLSCSSSFSGFSLGLDW 78

Query: 63  ----WGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
               W  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTT+GRAVLK RRAK
Sbjct: 79  NSRIWVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAK 138

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKS PSSGKGA
Sbjct: 139 GRKVLCTKSYPSSGKGA 155

[Close]

BLAST of Carg15339 vs. ExPASy TrEMBL
Match: A0A6J1KNU0 (50S ribosomal protein L34, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496954 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38
Identity = 103/137 (75.18%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DW 62
           +RVPSASLVFS  S    S+SLNTAN  +AR GLLH SFL SSSLSCSSSF+      DW
Sbjct: 15  VRVPSASLVFSTGSR-TSSISLNTANNASARPGLLHCSFLPSSSLSCSSSFSGLSLGLDW 74

Query: 63  G-----RQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRAK 122
                  QGKRRSLVVRAGKAA+CQTK+NRSRKSLA THGFRRRMRTTNGRAVLK RRAK
Sbjct: 75  SPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 134

Query: 123 DRKVLCTKSNPSSGKGA 129
            RKVLCTKSNPSSGK A
Sbjct: 135 GRKVLCTKSNPSSGKRA 150

[Close]

BLAST of Carg15339 vs. TAIR 10
Match: AT1G29070.1 (Ribosomal protein L34 )

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-23
Identity = 79/138 (57.25%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 3   IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADW------ 62
           I VPSASL   +  TGC   S +    ++A S LLH SFL SS +S +S F+        
Sbjct: 26  ICVPSASL---SLRTGCRRSSSSLT--SSASSQLLHCSFL-SSPVSLASPFSGLSIAFDL 85

Query: 63  -----GRQG-KRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRA 122
                G  G +RR LVVRAGKAA+CQTK++RSRKSLA THGFRRRMRTT+GRA +K RRA
Sbjct: 86  SSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRA 145

Query: 123 KDRKVLCTKSNPSSGKGA 129
           K R  LC KSNPSSGK A
Sbjct: 146 KGRWNLCPKSNPSSGKRA 157

The following BLAST results are available for this feature:

BLAST of Carg15339 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034639.1	1.0e-60	100.00	50S ribosomal protein L34, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_038883793.1	6.4e-42	77.37	50S ribosomal protein L34, chloroplastic [Benincasa hispida]	[more]
XP_008439748.1	3.2e-41	77.37	PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo] >TYK13199.1 5...	[more]
XP_004134668.1	2.7e-40	75.91	50S ribosomal protein L34, chloroplastic [Cucumis sativus] >KGN49298.1 hypotheti...	[more]
XP_022142342.1	3.5e-40	75.18	50S ribosomal protein L34, chloroplastic [Momordica charantia]	[more]

BLAST of Carg15339 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LP37	5.8e-22	57.25	50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
P82244	5.8e-22	57.35	50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 P...	[more]

BLAST of Carg15339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSJ7	1.5e-41	77.37	50S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AZG6	1.5e-41	77.37	50S ribosomal protein L34, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484452...	[more]
A0A0A0KI92	1.3e-40	75.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519510 PE=3 SV=1	[more]
A0A6J1CMH5	1.7e-40	75.18	50S ribosomal protein L34, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1KNU0	2.1e-38	75.18	50S ribosomal protein L34, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Carg15339 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29070.1	4.1e-23	57.25	Ribosomal protein L34	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 81..117 e-value: 3.4E-11 score: 42.9
IPR000271	Ribosomal protein L34	TIGRFAM	TIGR01030	TIGR01030	coord: 87..116 e-value: 2.5E-11 score: 41.6
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBER	coord: 3..127
None	No IPR available	GENE3D	1.10.287.3980		coord: 70..128 e-value: 3.3E-22 score: 79.9
None	No IPR available	PANTHER	PTHR14503:SF9	BNAC06G17900D PROTEIN	coord: 3..127
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15339-RA	Carg15339-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome