Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGGTACTGGAAGGCGAGTTTAATTTCGTGTATTATCGATATCTTTTTTTTGGTAGATTTTGTAAATAAATAA
mRNA sequence
ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA
Coding sequence (CDS)
ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA
Protein sequence
MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRINPIKIDFVNK
Homology
BLAST of Carg15240 vs. NCBI nr
Match:
KAG7023386.1 (hypothetical protein SDJN02_14411, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 319.3 bits (817), Expect = 1.8e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query: 1 MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPV 60
MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPV
Sbjct: 1 MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPV 60
Query: 61 PVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKA 120
PVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKA
Sbjct: 61 PVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKA 120
Query: 121 KSPTPAAESPGHWRFGCRPWRINPIKIDFVNK 153
KSPTPAAESPGHWRFGCRPWRINPIKIDFVNK
Sbjct: 121 KSPTPAAESPGHWRFGCRPWRINPIKIDFVNK 152
BLAST of Carg15240 vs. NCBI nr
Match:
KAG6589706.1 (hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 261.2 bits (666), Expect = 5.7e-66
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0
Query: 23 MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQ 82
MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQ
Sbjct: 1 MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQ 60
Query: 83 NKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRI 142
NKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGC PWRI
Sbjct: 61 NKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCSPWRI 120
Query: 143 NPIKI 148
NPIKI
Sbjct: 121 NPIKI 125
BLAST of Carg15240 vs. NCBI nr
Match:
XP_004146363.1 (uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical protein Csa_019691 [Cucumis sativus])
HSP 1 Score: 170.6 bits (431), Expect = 1.0e-38
Identity = 100/167 (59.88%), Postives = 109/167 (65.27%), Query Frame = 0
Query: 1 MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVE 60
MKEE N FVLPLD+FP+RNSSM RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E
Sbjct: 1 MKEEKNSNELFVLPLDNFPSRNSSMSRSSR-FYYRRTTEGVPFQWEMQPGTPKNNPPLTE 60
Query: 61 PVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ--SKSNNNSRPLD----DHR 120
+ I PPP V+SL L KP VQNKQP F+LF PWRKQ K N PLD + R
Sbjct: 61 VILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNER 120
Query: 121 SKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI 148
+F S CK KS PA S GHWR GC PWRINPIKI
Sbjct: 121 LRFDSCGSQCELMAESSCKGKS-APAGGSSGHWRLGCGPWRINPIKI 165
BLAST of Carg15240 vs. NCBI nr
Match:
XP_023530969.1 (uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 156.4 bits (394), Expect = 2.0e-34
Identity = 90/166 (54.22%), Postives = 106/166 (63.86%), Query Frame = 0
Query: 3 EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPV 62
E+ + FVLPLD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ P E V +
Sbjct: 4 EKDDAEFVLPLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-QPYTEAVTL 63
Query: 63 RIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNN---SRPLDDHRSKFG---- 122
I PPP +SL KPA Q KQ FLLFRPWRKQSKS + S +D RS+FG
Sbjct: 64 LITPPPAALSLRPPKPARTQGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGRSRFGSCGS 123
Query: 123 ------SPCKAKSPT--------PAAESPGHWRFGCRPWRINPIKI 148
SPC+ KS + PAAES H R GC PWRINP++I
Sbjct: 124 QCEFIQSPCQPKSSSSSSSWSSLPAAESSAHRRLGCGPWRINPLRI 168
BLAST of Carg15240 vs. NCBI nr
Match:
XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima])
HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 88/165 (53.33%), Postives = 105/165 (63.64%), Query Frame = 0
Query: 3 EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPV 62
E+ + FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP E V +
Sbjct: 4 EKDDAEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTL 63
Query: 63 RIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNN---SRPLDDHRSKFG---- 122
I PPP +SL KPA KQ FLLFRPWRKQSKS + S +D R++FG
Sbjct: 64 LITPPPAALSLRPPKPARTHGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGRTRFGSCGS 123
Query: 123 ------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI 148
SPC+ KS + PAAES H R GC PWRINP++I
Sbjct: 124 QCEFIQSPCEPKSSSSSAWSSLPAAESSAHRRLGCGPWRINPLRI 167
BLAST of Carg15240 vs. ExPASy TrEMBL
Match:
A0A0A0LUL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1)
HSP 1 Score: 170.6 bits (431), Expect = 4.9e-39
Identity = 100/167 (59.88%), Postives = 109/167 (65.27%), Query Frame = 0
Query: 1 MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVE 60
MKEE N FVLPLD+FP+RNSSM RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E
Sbjct: 1 MKEEKNSNELFVLPLDNFPSRNSSMSRSSR-FYYRRTTEGVPFQWEMQPGTPKNNPPLTE 60
Query: 61 PVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ--SKSNNNSRPLD----DHR 120
+ I PPP V+SL L KP VQNKQP F+LF PWRKQ K N PLD + R
Sbjct: 61 VILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNER 120
Query: 121 SKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI 148
+F S CK KS PA S GHWR GC PWRINPIKI
Sbjct: 121 LRFDSCGSQCELMAESSCKGKS-APAGGSSGHWRLGCGPWRINPIKI 165
BLAST of Carg15240 vs. ExPASy TrEMBL
Match:
A0A6J1KZJ1 (uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 6.3e-34
Identity = 88/165 (53.33%), Postives = 105/165 (63.64%), Query Frame = 0
Query: 3 EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPV 62
E+ + FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP E V +
Sbjct: 4 EKDDAEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTL 63
Query: 63 RIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNN---SRPLDDHRSKFG---- 122
I PPP +SL KPA KQ FLLFRPWRKQSKS + S +D R++FG
Sbjct: 64 LITPPPAALSLRPPKPARTHGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGRTRFGSCGS 123
Query: 123 ------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI 148
SPC+ KS + PAAES H R GC PWRINP++I
Sbjct: 124 QCEFIQSPCEPKSSSSSAWSSLPAAESSAHRRLGCGPWRINPLRI 167
BLAST of Carg15240 vs. ExPASy TrEMBL
Match:
A0A6J1EQV3 (uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC111436686 PE=4 SV=1)
HSP 1 Score: 153.3 bits (386), Expect = 8.2e-34
Identity = 89/165 (53.94%), Postives = 105/165 (63.64%), Query Frame = 0
Query: 3 EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPV 62
E+ + FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP E V +
Sbjct: 4 EKDDAEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTL 63
Query: 63 RIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLD---DHRSKFG---- 122
I PPP +SL KPA KQ FLLFRPWRKQSKS +S D D R++FG
Sbjct: 64 LITPPPAALSLRPPKPARTHGKQSLFLLFRPWRKQSKSQKHSCLSDEFGDGRTRFGSCGS 123
Query: 123 ------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI 148
SPC+ KS + PAAES H R GC PWRINP++I
Sbjct: 124 QCEFIQSPCEPKSSSSSSWSSLPAAESSAHRRLGCGPWRINPLRI 167
BLAST of Carg15240 vs. ExPASy TrEMBL
Match:
A0A5D3CJV8 (Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00380 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 8.7e-28
Identity = 79/145 (54.48%), Postives = 89/145 (61.38%), Query Frame = 0
Query: 23 MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TV 82
M RSSR +YYRRT+EGVPFQWEM PGTPK+ PPL E +P I PPP V+SL KP V
Sbjct: 1 MSRSSR-FYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVV 60
Query: 83 QNKQPQFLLFRPWRKQ----SKSNNNSRPLD----DHRSKFG-----------SPCKAKS 142
QNKQ F+LF PWRKQ K N PLD + R +F S CK +S
Sbjct: 61 QNKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRS 120
Query: 143 PTPAAESPGHWRFGCRPWRINPIKI 148
+P ES G WR GC PWRINPIKI
Sbjct: 121 -SPVGESSGQWRLGCGPWRINPIKI 143
BLAST of Carg15240 vs. ExPASy TrEMBL
Match:
A0A7J9CW56 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_001480 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 58/151 (38.41%), Postives = 79/151 (52.32%), Query Frame = 0
Query: 18 TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
+R+SS+G SSR YYY R+SEG+PF WEM PGTPK P E V I PPP ++SL L K
Sbjct: 24 SRDSSVGCSSRIYYY-RSSEGIPFNWEMQPGTPKE--PRKEDVLPPISPPPALLSLGLPK 83
Query: 78 P---ATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK----------------FGSPC 137
P +NK + +F+ W K + N+N + +DDH+S GSPC
Sbjct: 84 PRIDVVEENKVSKLKVFKFW-KHGRKNDNKKKIDDHQSDKYSNYETCSSDDDGEFVGSPC 143
Query: 138 KA----------KSPTPAAESPGHWRFGCRP 140
+ S TP+ +S + +GC P
Sbjct: 144 VSSSSSSSFSFGSSSTPSRDSSFNRHYGCGP 170
BLAST of Carg15240 vs. TAIR 10
Match:
AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 56.2 bits (134), Expect = 2.6e-08
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0
Query: 18 TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
+RNSS+G YY R EGVPF+WEM PGTP NT P E VP + PPP ++SL L K
Sbjct: 13 SRNSSVG-----YYDERMPEGVPFEWEMQPGTPINTQPR-EVVP-PLSPPPAMLSLGLPK 72
Query: 78 PATVQNKQPQFLLF 92
P ++ ++P+ +F
Sbjct: 73 P-SISIEEPKNFVF 78
BLAST of Carg15240 vs. TAIR 10
Match:
AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B )
HSP 1 Score: 56.2 bits (134), Expect = 2.6e-08
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0
Query: 18 TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
+RNSS+G YY R EGVPF+WEM PGTP NT P E VP + PPP ++SL L K
Sbjct: 13 SRNSSVG-----YYDERMPEGVPFEWEMQPGTPINTQPR-EVVP-PLSPPPAMLSLGLPK 72
Query: 78 PATVQNKQPQFLLF 92
P ++ ++P+ +F
Sbjct: 73 P-SISIEEPKNFVF 78
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7023386.1 | 1.8e-83 | 100.00 | hypothetical protein SDJN02_14411, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6589706.1 | 5.7e-66 | 99.20 | hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_004146363.1 | 1.0e-38 | 59.88 | uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical ... | [more] |
XP_023530969.1 | 2.0e-34 | 54.22 | uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo] | [more] |
XP_023007086.1 | 1.3e-33 | 53.33 | uncharacterized protein LOC111499680 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LUL8 | 4.9e-39 | 59.88 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1 | [more] |
A0A6J1KZJ1 | 6.3e-34 | 53.33 | uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680... | [more] |
A0A6J1EQV3 | 8.2e-34 | 53.94 | uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC1114366... | [more] |
A0A5D3CJV8 | 8.7e-28 | 54.48 | Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX... | [more] |
A0A7J9CW56 | 3.0e-12 | 38.41 | Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_001480 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
AT4G25845.1 | 2.6e-08 | 48.65 | BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela... | [more] |
AT4G25850.2 | 2.6e-08 | 48.65 | OSBP(oxysterol binding protein)-related protein 4B | [more] |