Carg15222 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTCACTGTTAGCCAACTACGCCTCCGACGACGACGAAGAACGGCAGCAGCACCACCAACCGCCGCAGCAGCCACCGTCGTCAATTAGCAAGCCTCAGAGAAACTCATCTTTCTCCTCGTCTCTTCCGCCCTGCCTAAATCTTCTTCCCTCTTCCAATCCATTCCCCAGCCCAAACAATCTTCCTGCCTTCTCTGCCAACTGGTTTCTTTGA ATGGAGTCACTGTTAGCCAACTACGCCTCCGACGACGACGAAGAACGGCAGCAGCACCACCAACCGCCGCAGCAGCCACCGTCGTCAATTAGCAAGCCTCAGAGAAACTCATCTTTCTCCTCGTCTCTTCCGCCCTGCCTAAATCTTCTTCCCTCTTCCAATCCATTCCCCAGCCCAAACAATCTTCCTGCCTTCTCTGCCAACTGGTTTCTTTGA ATGGAGTCACTGTTAGCCAACTACGCCTCCGACGACGACGAAGAACGGCAGCAGCACCACCAACCGCCGCAGCAGCCACCGTCGTCAATTAGCAAGCCTCAGAGAAACTCATCTTTCTCCTCGTCTCTTCCGCCCTGCCTAAATCTTCTTCCCTCTTCCAATCCATTCCCCAGCCCAAACAATCTTCCTGCCTTCTCTGCCAACTGGTTTCTTTGA MESLLANYASDDDEERQQHHQPPQQPPSSISKPQRNSSFSSSLPPCLNLLPSSNPFPSPNNLPAFSANWFL Homology
BLAST of Carg15222 vs. NCBI nr
Match: KAG6589689.1 (hypothetical protein SDJN03_15112, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023368.1 hypothetical protein SDJN02_14393, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
BLAST of Carg15222 vs. NCBI nr
Match: XP_038878727.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120070904 [Benincasa hispida]) HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05 Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0
BLAST of Carg15222 vs. NCBI nr
Match: XP_004146373.1 (proline-rich protein PRCC [Cucumis sativus] >KGN65488.1 hypothetical protein Csa_019895 [Cucumis sativus]) HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05 Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of Carg15222 vs. NCBI nr
Match: TYK28575.1 (ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa]) HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04 Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of Carg15222 vs. NCBI nr
Match: XP_008453553.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo] >KAA0058210.1 ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa]) HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04 Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A0A0LUQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G425920 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05 Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A5D3DZ12 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002230 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05 Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A5A7USS5 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005320 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05 Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A1S3BWI7 (ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo OX=3656 GN=LOC103494234 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05 Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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