Carg15222 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15222
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionubiquitin carboxyl-terminal hydrolase 36
LocationCarg_Chr10: 1747318 .. 1747533 (-)
RNA-Seq ExpressionCarg15222
SyntenyCarg15222
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCACTGTTAGCCAACTACGCCTCCGACGACGACGAAGAACGGCAGCAGCACCACCAACCGCCGCAGCAGCCACCGTCGTCAATTAGCAAGCCTCAGAGAAACTCATCTTTCTCCTCGTCTCTTCCGCCCTGCCTAAATCTTCTTCCCTCTTCCAATCCATTCCCCAGCCCAAACAATCTTCCTGCCTTCTCTGCCAACTGGTTTCTTTGA

mRNA sequence

ATGGAGTCACTGTTAGCCAACTACGCCTCCGACGACGACGAAGAACGGCAGCAGCACCACCAACCGCCGCAGCAGCCACCGTCGTCAATTAGCAAGCCTCAGAGAAACTCATCTTTCTCCTCGTCTCTTCCGCCCTGCCTAAATCTTCTTCCCTCTTCCAATCCATTCCCCAGCCCAAACAATCTTCCTGCCTTCTCTGCCAACTGGTTTCTTTGA

Coding sequence (CDS)

ATGGAGTCACTGTTAGCCAACTACGCCTCCGACGACGACGAAGAACGGCAGCAGCACCACCAACCGCCGCAGCAGCCACCGTCGTCAATTAGCAAGCCTCAGAGAAACTCATCTTTCTCCTCGTCTCTTCCGCCCTGCCTAAATCTTCTTCCCTCTTCCAATCCATTCCCCAGCCCAAACAATCTTCCTGCCTTCTCTGCCAACTGGTTTCTTTGA

Protein sequence

MESLLANYASDDDEERQQHHQPPQQPPSSISKPQRNSSFSSSLPPCLNLLPSSNPFPSPNNLPAFSANWFL
Homology
BLAST of Carg15222 vs. NCBI nr
Match: KAG6589689.1 (hypothetical protein SDJN03_15112, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023368.1 hypothetical protein SDJN02_14393, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQRNSSFSSSLPPCLNLLPSSNPFPSPN 60
          MESLLANYASDDDEERQQHHQPPQQPPSSISKPQRNSSFSSSLPPCLNLLPSSNPFPSPN
Sbjct: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQRNSSFSSSLPPCLNLLPSSNPFPSPN 60

Query: 61 NLPAFSANWFL 72
          NLPAFSANWFL
Sbjct: 61 NLPAFSANWFL 71

BLAST of Carg15222 vs. NCBI nr
Match: XP_038878727.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120070904 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQRN----------SSFSSSLPP 46
          M+SLLANYAS  DEE +QH QPP QPPSSISKPQR+          SSFSSSLPP
Sbjct: 1  MDSLLANYASSSDEE-EQHQQPPPQPPSSISKPQRSEFXESSTFRISSFSSSLPP 54

BLAST of Carg15222 vs. NCBI nr
Match: XP_004146373.1 (proline-rich protein PRCC [Cucumis sativus] >KGN65488.1 hypothetical protein Csa_019895 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQ----------RNSSFSSSL-PPCLNL 60
          M+SLLANYASDDDEE + H QPP  PPSSIS P           R+SSFSSSL PP  + 
Sbjct: 1  MDSLLANYASDDDEE-EHHQQPPPHPPSSISNPPRSEFSETSTFRSSSFSSSLPPPKSSS 60

Query: 61 LPSSNPFPSPNNLPAFSANWF 71
          L  S P P  ++ P+  A +F
Sbjct: 61 LFQSLPHPKQSSKPSLPAGFF 80

BLAST of Carg15222 vs. NCBI nr
Match: TYK28575.1 (ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQ----------RNSSFSSSL-PPCLNL 60
          M+SLLANYAS DDEE + H QPP QPPSSISKP           R+SSFSSSL PP  + 
Sbjct: 1  MDSLLANYASSDDEE-EHHQQPPAQPPSSISKPPRSELSETSTFRSSSFSSSLPPPKSSS 60

Query: 61 LPSSNPFPSPNNLPAFSANWF 71
          L  S   P  ++ P+  A +F
Sbjct: 61 LFQSLSQPKQSSKPSLPAGFF 80

BLAST of Carg15222 vs. NCBI nr
Match: XP_008453553.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo] >KAA0058210.1 ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQ----------RNSSFSSSL-PPCLNL 60
          M+SLLANYAS DDEE + H QPP QPPSSISKP           R+SSFSSSL PP  + 
Sbjct: 1  MDSLLANYASSDDEE-EHHQQPPAQPPSSISKPPRSELSETSTFRSSSFSSSLPPPKSSS 60

Query: 61 LPSSNPFPSPNNLPAFSANWF 71
          L  S   P  ++ P+  A +F
Sbjct: 61 LFQSLSQPKQSSKPSLPAGFF 80

BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A0A0LUQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G425920 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQ----------RNSSFSSSL-PPCLNL 60
          M+SLLANYASDDDEE + H QPP  PPSSIS P           R+SSFSSSL PP  + 
Sbjct: 1  MDSLLANYASDDDEE-EHHQQPPPHPPSSISNPPRSEFSETSTFRSSSFSSSLPPPKSSS 60

Query: 61 LPSSNPFPSPNNLPAFSANWF 71
          L  S P P  ++ P+  A +F
Sbjct: 61 LFQSLPHPKQSSKPSLPAGFF 80

BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A5D3DZ12 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002230 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQ----------RNSSFSSSL-PPCLNL 60
          M+SLLANYAS DDEE + H QPP QPPSSISKP           R+SSFSSSL PP  + 
Sbjct: 1  MDSLLANYASSDDEE-EHHQQPPAQPPSSISKPPRSELSETSTFRSSSFSSSLPPPKSSS 60

Query: 61 LPSSNPFPSPNNLPAFSANWF 71
          L  S   P  ++ P+  A +F
Sbjct: 61 LFQSLSQPKQSSKPSLPAGFF 80

BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A5A7USS5 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005320 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQ----------RNSSFSSSL-PPCLNL 60
          M+SLLANYAS DDEE + H QPP QPPSSISKP           R+SSFSSSL PP  + 
Sbjct: 1  MDSLLANYASSDDEE-EHHQQPPAQPPSSISKPPRSELSETSTFRSSSFSSSLPPPKSSS 60

Query: 61 LPSSNPFPSPNNLPAFSANWF 71
          L  S   P  ++ P+  A +F
Sbjct: 61 LFQSLSQPKQSSKPSLPAGFF 80

BLAST of Carg15222 vs. ExPASy TrEMBL
Match: A0A1S3BWI7 (ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo OX=3656 GN=LOC103494234 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MESLLANYASDDDEERQQHHQPPQQPPSSISKPQ----------RNSSFSSSL-PPCLNL 60
          M+SLLANYAS DDEE + H QPP QPPSSISKP           R+SSFSSSL PP  + 
Sbjct: 1  MDSLLANYASSDDEE-EHHQQPPAQPPSSISKPPRSELSETSTFRSSSFSSSLPPPKSSS 60

Query: 61 LPSSNPFPSPNNLPAFSANWF 71
          L  S   P  ++ P+  A +F
Sbjct: 61 LFQSLSQPKQSSKPSLPAGFF 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589689.11.1e-30100.00hypothetical protein SDJN03_15112, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038878727.11.5e-0567.27LOW QUALITY PROTEIN: uncharacterized protein LOC120070904 [Benincasa hispida][more]
XP_004146373.12.6e-0551.85proline-rich protein PRCC [Cucumis sativus] >KGN65488.1 hypothetical protein Csa... [more]
TYK28575.11.3e-0451.85ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo var. makuwa][more]
XP_008453553.11.3e-0451.85PREDICTED: ubiquitin carboxyl-terminal hydrolase 36 [Cucumis melo] >KAA0058210.1... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUQ81.3e-0551.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G425920 PE=4 SV=1[more]
A0A5D3DZ126.3e-0551.85Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7USS56.3e-0551.85Ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3BWI76.3e-0551.85ubiquitin carboxyl-terminal hydrolase 36 OS=Cucumis melo OX=3656 GN=LOC103494234... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15222-RACarg15222-RAmRNA