Carg15139 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15139
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	3-hexulose-6-phosphate isomerase
Location	Carg_Chr16: 703600 .. 704630 (+)
RNA-Seq Expression	Carg15139
Synteny	Carg15139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAAATGGATCAGATCAGGCAATAAGAGGAATTAACCCATTACAAATTCGGATCGATAAAACAGATAGGAAGTCGGATTCATACTCTTGGAATGAAAGGATTACTGAAAGAACTGCCGCTAGTGTACGGCCTTCCCCTTCCAGTGCAGCAAATACGAGCTCTCACCGCCTGAAAATAACCGGAGCTCTGTTTTTCCGTCCAAGAATTATAGAACTACCCTTCTAGAGGACGCTCTGTCTCTCGATTTCTCCCGATGCCGCAATTGCAAAGCAACGTTCTCTTCTCCCAATACCGATATTGCCCCCGCCAATTTGGCCATAGGGTATGTCGTTTGATTCCTTATTTCTAAATAAATAAATATAATTCGAAACTTAATCATATAATATGTTTCATTAACCTAAAATTAATTACAATTTTAACCGATCAACAATATGTCACATTTTTTATAACATAAAGTAAAGAATATGATTATTTTAGTATTACTTATATAATATACCTTATGCTTCATATTAAATATATTATTAATACTAATCACACGTGGCATGATACCACAGGATAATTCAAAACGACTGCACCAGAAGCACATCACATAGAGCCAAAACCCCTTAATTTCGTTAGTTTAAAGACGATGCGTTGAAACCGAGAGAGTCACCATCAAGCGACCTCACGCGCCGCCCGGATGGACGGTTGTTCCTCTACGGTGTCGGCCGTGAAGGCCTAATGCTCAAAGCCCTTTGTATACGGCTAGCTCATCTCGGCCTCTCGTCGCACCAGGTTTGCGACATGAACGCGCCGCCAATTTCAGCTCCTGACCTCCTGTATACGGATTTTCGACCGTCGATGCGATTTTCTCCGAGGCCAGATCCAACGGCGATAGCGTTTTGCTTCTGACTGTCTAGACGGAGAGCGGCTCGTGTGTTAATCACGCCGATGTGATTTTCTACGTTCCGGCGCAGAGCATGGCGGACGATGAGGAATCGACGACGGCGGCGGTGAAATGGCGGCCTCTGCTTCCGATGGGGTGA

mRNA sequence

ATGGCAGTAAATGGATCAGATCAGGCAATAAGAGGAATTAACCCATTACAAATTCGGATCGATAAAACAGATAGGAACAAATACGAGCTCTCACCGCCTGAAAATAACCGGAGCTCTGTTTTTCCGTCCAAGAATTATAGAACTACCCTTCTAGAGGACGCTCTGTCTCTCGATTTCTCCCGATGCCGCAATTGCAAAGCAACGTTCTCTTCTCCCAATACCGATATTGCCCCCGCCAATTTGGCCATAGGAGAGTCACCATCAAGCGACCTCACGCGCCGCCCGGATGGACGGTTGTTCCTCTACGGTGTCGGCCGTGAAGGCCTAATGCTCAAAGCCCTTTGTATACGGCTAGCTCATCTCGGCCTCTCGTCGCACCAGACGGAGAGCGGCTCGTGTGTTAATCACGCCGATGTGATTTTCTACGTTCCGGCGCAGAGCATGGCGGACGATGAGGAATCGACGACGGCGGCGGTGAAATGGCGGCCTCTGCTTCCGATGGGGTGA

Coding sequence (CDS)

ATGGCAGTAAATGGATCAGATCAGGCAATAAGAGGAATTAACCCATTACAAATTCGGATCGATAAAACAGATAGGAACAAATACGAGCTCTCACCGCCTGAAAATAACCGGAGCTCTGTTTTTCCGTCCAAGAATTATAGAACTACCCTTCTAGAGGACGCTCTGTCTCTCGATTTCTCCCGATGCCGCAATTGCAAAGCAACGTTCTCTTCTCCCAATACCGATATTGCCCCCGCCAATTTGGCCATAGGAGAGTCACCATCAAGCGACCTCACGCGCCGCCCGGATGGACGGTTGTTCCTCTACGGTGTCGGCCGTGAAGGCCTAATGCTCAAAGCCCTTTGTATACGGCTAGCTCATCTCGGCCTCTCGTCGCACCAGACGGAGAGCGGCTCGTGTGTTAATCACGCCGATGTGATTTTCTACGTTCCGGCGCAGAGCATGGCGGACGATGAGGAATCGACGACGGCGGCGGTGAAATGGCGGCCTCTGCTTCCGATGGGGTGA

Protein sequence

MAVNGSDQAIRGINPLQIRIDKTDRNKYELSPPENNRSSVFPSKNYRTTLLEDALSLDFSRCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHLGLSSHQTESGSCVNHADVIFYVPAQSMADDEESTTAAVKWRPLLPMG

Homology

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: KAG7014776.1 (hypothetical protein SDJN02_22405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.5 bits (872), Expect = 8.2e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MAVNGSDQAIRGINPLQIRIDKTDRNKYELSPPENNRSSVFPSKNYRTTLLEDALSLDFS 60
           MAVNGSDQAIRGINPLQIRIDKTDRNKYELSPPENNRSSVFPSKNYRTTLLEDALSLDFS
Sbjct: 1   MAVNGSDQAIRGINPLQIRIDKTDRNKYELSPPENNRSSVFPSKNYRTTLLEDALSLDFS 60

Query: 61  RCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAH 120
           RCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAH
Sbjct: 61  RCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAH 120

Query: 121 LGLSSHQTESGSCVNHADVIFYVPAQSMADDEESTTAAVKWRPLLPMG 169
           LGLSSHQTESGSCVNHADVIFYVPAQSMADDEESTTAAVKWRPLLPMG
Sbjct: 121 LGLSSHQTESGSCVNHADVIFYVPAQSMADDEESTTAAVKWRPLLPMG 168

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_004140780.1 (uncharacterized protein LOC101217276 [Cucumis sativus] >KGN57361.1 hypothetical protein Csa_010268 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-18
Identity = 69/154 (44.81%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP  L I  S  S +  R   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPP-LEILVSELSSVAER-KARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSKGGRVLVLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_022945534.1 (uncharacterized protein LOC111449742 [Cucurbita moschata] >XP_023542323.1 uncharacterized protein LOC111802255 [Cucurbita pepo subsp. pepo] >KAG6574169.1 hypothetical protein SDJN03_28056, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013223.1 hxlB, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 67/155 (43.23%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    +P    +    S+   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASVFSKPTRQHSPPLELLVSELSAAAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAAHDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPETGSSV 133

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_022968332.1 (uncharacterized protein LOC111467597 [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-17
Identity = 66/155 (42.58%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + F  P    +P    +    S+   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASVFFKPTRQHSPPLELLVSELSAAAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAARDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPETGSSV 133

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: KAA0033631.1 (3-hexulose-6-phosphate isomerase [Cucumis melo var. makuwa] >TYK22930.1 3-hexulose-6-phosphate isomerase [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 66/154 (42.86%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP+   +    SS   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPSLDILVSELSSVAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. ExPASy TrEMBL
Match: A0A0A0LBC8 (3-hexulose-6-phosphate isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G181970 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 69/154 (44.81%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP  L I  S  S +  R   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPP-LEILVSELSSVAER-KARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSKGGRVLVLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. ExPASy TrEMBL
Match: A0A6J1G183 (uncharacterized protein LOC111449742 OS=Cucurbita moschata OX=3662 GN=LOC111449742 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.9e-18
Identity = 67/155 (43.23%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    +P    +    S+   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASVFSKPTRQHSPPLELLVSELSAAAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAAHDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPETGSSV 133

[Close]

BLAST of Carg15139 vs. ExPASy TrEMBL
Match: A0A6J1HTB3 (uncharacterized protein LOC111467597 OS=Cucurbita maxima OX=3661 GN=LOC111467597 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.4e-17
Identity = 66/155 (42.58%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + F  P    +P    +    S+   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASVFFKPTRQHSPPLELLVSELSAAAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAARDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPETGSSV 133

[Close]

BLAST of Carg15139 vs. ExPASy TrEMBL
Match: A0A5A7SW26 (3-hexulose-6-phosphate isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00080 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.9e-17
Identity = 66/154 (42.86%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP+   +    SS   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPSLDILVSELSSVAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. ExPASy TrEMBL
Match: A0A1S3AXT7 (3-hexulose-6-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103484066 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.9e-17
Identity = 66/154 (42.86%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP+   +    SS   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPSLDILVSELSSVAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. TAIR 10
Match: AT5G52190.1 (Sugar isomerase (SIS) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 47/165 (28.48%), Postives = 65/165 (39.39%), Query Frame = 0


Query: 52  EDALSLDFSRCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLML 111
           ++  +L    C    + F+ P +   P    +    ++    R + R+FLYGVGREGLML
Sbjct: 7   QEMANLSSQICNQISSVFTKPTSPYPPPLDLLVTELTAISRNRNNSRIFLYGVGREGLML 66

Query: 112 KALCIRLAHLGLSSH--------------------------------------------- 169
           KA  +RL H GL +H                                             
Sbjct: 67  KAFAMRLFHFGLPTHLVFDMTTPPISSSDLLIASAGPGGFSTVDALCSVAKSNGAKVILI 126

The following BLAST results are available for this feature:

BLAST of Carg15139 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014776.1	8.2e-90	100.00	hypothetical protein SDJN02_22405, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004140780.1	8.4e-18	44.81	uncharacterized protein LOC101217276 [Cucumis sativus] >KGN57361.1 hypothetical ...	[more]
XP_022945534.1	1.4e-17	43.23	uncharacterized protein LOC111449742 [Cucurbita moschata] >XP_023542323.1 unchar...	[more]
XP_022968332.1	7.1e-17	42.58	uncharacterized protein LOC111467597 [Cucurbita maxima]	[more]
KAA0033631.1	1.2e-16	42.86	3-hexulose-6-phosphate isomerase [Cucumis melo var. makuwa] >TYK22930.1 3-hexulo...	[more]

BLAST of Carg15139 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg15139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBC8	4.1e-18	44.81	3-hexulose-6-phosphate isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G181970 PE=3...	[more]
A0A6J1G183	6.9e-18	43.23	uncharacterized protein LOC111449742 OS=Cucurbita moschata OX=3662 GN=LOC1114497...	[more]
A0A6J1HTB3	3.4e-17	42.58	uncharacterized protein LOC111467597 OS=Cucurbita maxima OX=3661 GN=LOC111467597...	[more]
A0A5A7SW26	5.9e-17	42.86	3-hexulose-6-phosphate isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3AXT7	5.9e-17	42.86	3-hexulose-6-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103484066 PE=4 SV...	[more]

BLAST of Carg15139 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52190.1	1.1e-10	28.48	Sugar isomerase (SIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017552	3-hexulose-6-phosphate isomerase	PANTHER	PTHR43443	3-HEXULOSE-6-PHOSPHATE ISOMERASE	coord: 128..168 coord: 90..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15139-RA	Carg15139-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity