Carg15097 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15097
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Reticulon-like protein
Location	Carg_Chr16: 500014 .. 501828 (-)
RNA-Seq Expression	Carg15097
Synteny	Carg15097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGCGTTCTCTACTCATACCTGGTCTCTCGTCTCTGCTTCGGAGACGATTCTTTCTCGCATTTCCATTTTCTGTTCTTCAATTTTGCCTGAAGGATCCATGGCTGACCAACCAGGCGGGCTGGATTCGGTTATTAACAAGATCTCCGGTAAGATCGACGGCTACAATTCTTCCTCTTCCTCCGGCTCTGATGATGGCCACCCTTCAAAAATCAATGCTGTAAAATCCCACGTTTTTAGGCTCTTCGGTAGAGATAAGCCCGTTCACACGGTCTTGGGCGGTGGAAAACGTACTCTCTGATCCTAATCTCTATCTCTGTCTTTATCGTGATTGATCGGTTAATGGAAGATTTTACGGATATATAAGTATTGGATCATGCTCTGTTTGTCATTCTTACCTATCAAATTCCTTTCTGTCTTTCTACAATGTTATAATCGAGATGTGCTTGCGCGAGTTCTTGCCATTTTTCGTTCGATTGGATGACTGTCCAATGTTTTTTGCCCTATTTTTTGAAGGAAACAATTTCATTGATTGAATGAAATGGTACTAAGTGAAAAACAAATCCAAACGGATCGCATAAACGATGACTGATAATAAATTTTCTTATGCATTTTCTAAAAGAAGAGTTGCTTCTTACATCAGAGATTGAGTGATTGTCCAATGTTAAAACGGAGAGTATTCTCTTTTTCTTTCAATCAAGTTATGGATGAAAACCTTAGGTTATTAGCGTTATGGCTTCATAATCTGTGCCAATGAGTATTGACATAGGCTCTTGACCAAGAGGTAGGAGGTTCCAATTTGTGACCTTGAGATTGGTGTGCTAAGAAAACAAATTTCTGTTGTTTTACCCCTCACCGGTTTGCTGTCTTTATCCGTGAGGGACCTTTTCTTATAAGTTATGGTTACTTCCGGTTGCAGCTGCTGATGTTCTTCTTTGGAGGAACAAGAAGAACTCTGCAGGCATCCTTGGGGGTGCCACTGCCTTGTGGATTCTTTTTGAGTTGCTTGAGTACCAATTAGTCACTCTCGTATGCCATATATTAATTCTTGTACTGGCTCTAGTTTTCACGCGGTCTTATGCCAGTTCGTTTATCAACAAGTAAGGACTTCGACTTGCAAAATCTAATGCAATAAATAGCCTGTTTCGCCCTTTTTTTTTTATATATATATATTTTTCGTGTTCTTTGTACAGGTCCCCACCGCAAATCCCAGATTTTAGACTTCCTGAAGATCGTCTACTCGAGGTTGTCTCTGCACTGAGAATCGAAATCAACCATGTAATCTCCAATTTACGTAACATTGCTTCTGGGAGAGATTTGAAGAAATTCCTCCGTGTACGTTCACTGTTACTATCTCCTGAGTAAAGGAAATATTTCTAGACTCGATCATCTATAGGAAACTTCATTTTTCATCAATTGGTTCATTTACTAATCTGGTAATGCTGCTGAGGATGTTTTATACCATTAACAGGCTTTTATTGGCTTATGGGTTCTATCAATGGTTGGAAGCTGGTGCAATTTTCTGACCTTGTTATACACATGTAAGGACTACTCTTTCAATCTTCGCTGAGAAATTACCAAATCGCCTGCATTTAGGTGCTTACATAATGATATATTGATGTGCTTATTGATGCTTGAAAAACAGCCGTTGTATTGCTACACACTGTGCCAGTGCTATATGAGAAGTATGATGACCAGGTTGACGCATTTGCTGAGAAGGCTTTGATAGAGGTCAAGAAGCAGTATGCTGTATTTAACGCCGAAGTTCTGAGTAAAATCCCGATGGGGGCACTCAAAGAGAAGAAGAAGGATTAG

mRNA sequence

TTTCGCGTTCTCTACTCATACCTGGTCTCTCGTCTCTGCTTCGGAGACGATTCTTTCTCGCATTTCCATTTTCTGTTCTTCAATTTTGCCTGAAGGATCCATGGCTGACCAACCAGGCGGGCTGGATTCGGTTATTAACAAGATCTCCGGTAAGATCGACGGCTACAATTCTTCCTCTTCCTCCGGCTCTGATGATGGCCACCCTTCAAAAATCAATGCTGTAAAATCCCACGTTTTTAGGCTCTTCGGTAGAGATAAGCCCGTTCACACGGTCTTGGGCGGTGGAAAACCTGCTGATGTTCTTCTTTGGAGGAACAAGAAGAACTCTGCAGGCATCCTTGGGGGTGCCACTGCCTTGTGGATTCTTTTTGAGTTGCTTGAGTACCAATTAGTCACTCTCGTATGCCATATATTAATTCTTGTACTGGCTCTAGTTTTCACGCGGTCTTATGCCAGTTCGTTTATCAACAAGTCCCCACCGCAAATCCCAGATTTTAGACTTCCTGAAGATCGTCTACTCGAGGTTGTCTCTGCACTGAGAATCGAAATCAACCATGTAATCTCCAATTTACGTAACATTGCTTCTGGGAGAGATTTGAAGAAATTCCTCCGTGCTTTTATTGGCTTATGGGTTCTATCAATGGTTGGAAGCTGGTGCAATTTTCTGACCTTGTTATACACATCCGTTGTATTGCTACACACTGTGCCAGTGCTATATGAGAAGTATGATGACCAGGTTGACGCATTTGCTGAGAAGGCTTTGATAGAGGTCAAGAAGCAGTATGCTGTATTTAACGCCGAAGTTCTGAGTAAAATCCCGATGGGGGCACTCAAAGAGAAGAAGAAGGATTAG

Coding sequence (CDS)

ATGGCTGACCAACCAGGCGGGCTGGATTCGGTTATTAACAAGATCTCCGGTAAGATCGACGGCTACAATTCTTCCTCTTCCTCCGGCTCTGATGATGGCCACCCTTCAAAAATCAATGCTGTAAAATCCCACGTTTTTAGGCTCTTCGGTAGAGATAAGCCCGTTCACACGGTCTTGGGCGGTGGAAAACCTGCTGATGTTCTTCTTTGGAGGAACAAGAAGAACTCTGCAGGCATCCTTGGGGGTGCCACTGCCTTGTGGATTCTTTTTGAGTTGCTTGAGTACCAATTAGTCACTCTCGTATGCCATATATTAATTCTTGTACTGGCTCTAGTTTTCACGCGGTCTTATGCCAGTTCGTTTATCAACAAGTCCCCACCGCAAATCCCAGATTTTAGACTTCCTGAAGATCGTCTACTCGAGGTTGTCTCTGCACTGAGAATCGAAATCAACCATGTAATCTCCAATTTACGTAACATTGCTTCTGGGAGAGATTTGAAGAAATTCCTCCGTGCTTTTATTGGCTTATGGGTTCTATCAATGGTTGGAAGCTGGTGCAATTTTCTGACCTTGTTATACACATCCGTTGTATTGCTACACACTGTGCCAGTGCTATATGAGAAGTATGATGACCAGGTTGACGCATTTGCTGAGAAGGCTTTGATAGAGGTCAAGAAGCAGTATGCTGTATTTAACGCCGAAGTTCTGAGTAAAATCCCGATGGGGGCACTCAAAGAGAAGAAGAAGGATTAG

Protein sequence

MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLGGGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMGALKEKKKD

Homology

[Close]

BLAST of Carg15097 vs. NCBI nr
Match: KAG7014737.1 (Reticulon-like protein B1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 485.3 bits (1248), Expect = 3.1e-133
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240

Query: 241 MGALKEKKKD 251
           MGALKEKKKD
Sbjct: 241 MGALKEKKKD 250

[Close]

BLAST of Carg15097 vs. NCBI nr
Match: XP_022922933.1 (reticulon-like protein B1 [Cucurbita moschata] >XP_022922934.1 reticulon-like protein B1 [Cucurbita moschata] >XP_022922935.1 reticulon-like protein B1 [Cucurbita moschata])

HSP 1 Score: 483.0 bits (1242), Expect = 1.5e-132
Identity = 248/250 (99.20%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQL+TLVCHILILVLALVFTRSYASS
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLVCHILILVLALVFTRSYASS 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVF+AEVLSKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFSAEVLSKIP 240

Query: 241 MGALKEKKKD 251
           MGALKEKKKD
Sbjct: 241 MGALKEKKKD 250

[Close]

BLAST of Carg15097 vs. NCBI nr
Match: KAG6576686.1 (Reticulon-like protein B1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 479.6 bits (1233), Expect = 1.7e-131
Identity = 247/250 (98.80%), Postives = 248/250 (99.20%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQL+TLVCHILILVLALVFT SYASS
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLVCHILILVLALVFTLSYASS 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEV SKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVPSKIP 240

Query: 241 MGALKEKKKD 251
           MGALKEKKKD
Sbjct: 241 MGALKEKKKD 250

[Close]

BLAST of Carg15097 vs. NCBI nr
Match: XP_023553084.1 (reticulon-like protein B1 [Cucurbita pepo subsp. pepo] >XP_023553085.1 reticulon-like protein B1 [Cucurbita pepo subsp. pepo] >XP_023553086.1 reticulon-like protein B1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 245/250 (98.00%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQPGGLDSVI+KISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVIDKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQL+TLVCHILILVLALVFTRSYASS
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLVCHILILVLALVFTRSYASS 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINKSPPQIPDFRLPEDRLLEVVSA+RI+INHVISNLRNIASGRDLKKFLRAFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSAMRIKINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIE KKQYAVFNAEVLSKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEFKKQYAVFNAEVLSKIP 240

Query: 241 MGALKEKKKD 251
           MGALKEKKKD
Sbjct: 241 MGALKEKKKD 250

[Close]

BLAST of Carg15097 vs. NCBI nr
Match: XP_022984754.1 (reticulon-like protein B1 [Cucurbita maxima])

HSP 1 Score: 472.6 bits (1215), Expect = 2.1e-129
Identity = 243/250 (97.20%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQPGGLDSV +KISGKIDGYNSSSSSGSDD  PSKINAVKSHVFRLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVTDKISGKIDGYNSSSSSGSDDDQPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQL+TL+CHILILVLALVFTRSYASS
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLLCHILILVLALVFTRSYASS 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240

Query: 241 MGALKEKKKD 251
           MGAL+EKKKD
Sbjct: 241 MGALQEKKKD 250

[Close]

BLAST of Carg15097 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.7e-76
Identity = 149/252 (59.13%), Postives = 196/252 (77.78%), Query Frame = 0


Query: 9   DSVINKISGKI--DGYNSSSSSGSDDGHPSK--------INAVKSHVFRLFGRDKPVHTV 68
           +S+++KIS KI   G +SSSSS SDD    K         +++KS V+RLFGR++PVH V
Sbjct: 24  ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83

Query: 69  LGGGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYA 128
           LGGGKPAD+ +W+NKK S G+LGGATA W++FEL+EY L+TL+CH++I+VLA++F  S A
Sbjct: 84  LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query: 129 SSFINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWV 188
           + FINKSPP+IP+  +PE+ +L++ S LRIEIN   S+LR IASGRDLKKFL A  GLWV
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query: 189 LSMVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSK 248
           LS++G   NFLTL Y ++VLL TVP+ Y+KY+D+VD   EKA+IE+KKQYAV + +VLSK
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query: 249 IPMGALKEKKKD 251
           IP+G LK KKKD
Sbjct: 264 IPLGPLKNKKKD 275

[Close]

BLAST of Carg15097 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.8e-74
Identity = 142/248 (57.26%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 9   DSVINKISGKIDGY-NSSSSSGSDDGHPSKIN-----AVKSHVFRLFGRDKPVHTVLGGG 68
           +S++ K+S KI    +SSSSS SDD +  K +     ++KS V+RLFGR++PVH VLGGG
Sbjct: 24  ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83

Query: 69  KPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFI 128
           KPAD+ +W++KK S G+ GGAT  W+LFEL+EY L+TL+CH++I+ LA++F  S A+ FI
Sbjct: 84  KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143

Query: 129 NKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMV 188
           +KSPP+IP+  +PE+ LL++ S LRIEIN  IS+LR IASGRD+KKFL A  GLWVLS++
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203

Query: 189 GSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMG 248
           G   +FLTL Y ++VLL TVP+ Y+KY+D+VD++ EKA+ E+KKQYAV +A+V SKIP G
Sbjct: 204 GGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRG 263

Query: 249 ALKEKKKD 251
            LK+KKKD
Sbjct: 264 PLKDKKKD 271

[Close]

BLAST of Carg15097 vs. ExPASy Swiss-Prot
Match: Q9SH59 (Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-71
Identity = 147/255 (57.65%), Postives = 186/255 (72.94%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MA++    +S++ KIS KI G++ SSSS SD        ++K+ ++RLFGR++P+H + G
Sbjct: 1   MAEEHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPAD+ LWRNKK S G+LG AT  WILFELLEY L+TL  HI IL LA++F  S AS+
Sbjct: 61  GGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSAST 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FI+KSP  IP+  +PED +L++ S LRIEIN   + LR+IASGRDLKKFL    GLWVLS
Sbjct: 121 FIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVL---- 240
            VGS CNFLTL+Y + VLL T+PVLYEKY+D+VD F EKA+ E+KKQY  F+ +VL    
Sbjct: 181 KVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVM 240

Query: 241 SKIPMGALK-EKKKD 251
           SKIP GA    KKKD
Sbjct: 241 SKIPKGAFAFIKKKD 255

[Close]

BLAST of Carg15097 vs. ExPASy Swiss-Prot
Match: O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.5e-71
Identity = 137/241 (56.85%), Postives = 184/241 (76.35%), Query Frame = 0


Query: 9   DSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLGGGKPADVL 68
           +S++ KIS KI  ++SSSSS S+   P   +AVK+ ++R+FGR+KPVH VLGGGKPADV 
Sbjct: 13  ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query: 69  LWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFINKSPPQ 128
           LWR+KK S  +LG ATA+W+LFEL+EY L++L+CHI IL L  +F  S A + INK+ PQ
Sbjct: 73  LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query: 129 IPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMVGSWCNF 188
           IP+  +PE+  L V S+LR E+N     LR+IA GRDLKKFL   +GLW++S+VG+W NF
Sbjct: 133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

Query: 189 LTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMGALKEKK 248
           LTL+Y   V+LHTVP+LYEK++D+VD  AEKA+ E++KQY VF+ +VLSKIP+ +LK K 
Sbjct: 193 LTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKA 252

Query: 249 K 250
           K
Sbjct: 253 K 253

[Close]

BLAST of Carg15097 vs. ExPASy Swiss-Prot
Match: Q6DBN4 (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.5e-71
Identity = 135/239 (56.49%), Postives = 182/239 (76.15%), Query Frame = 0


Query: 9   DSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLGGGKPADVL 68
           +S++ KI+ KI  ++SSSSS S+   P   +A+K+ ++RLFGR+KPVH VLGGG PADV 
Sbjct: 13  ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query: 69  LWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFINKSPPQ 128
           LWR+KK SA +LG ATA+W+LFEL+EY  ++LVCHILI  LA +F  S A +F+NK+PP+
Sbjct: 73  LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132

Query: 129 IPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMVGSWCNF 188
           IP+  + E+  L +VSALR E+N     LR+IA GRDLKKFL    GLW++S+VG+W NF
Sbjct: 133 IPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNF 192

Query: 189 LTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMGALKEK 248
           LTL+Y   V+LHTVP+LYEK++D+VD  AEK L E+KK Y VF+ +VLSK+P+ +LK K
Sbjct: 193 LTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251

[Close]

BLAST of Carg15097 vs. ExPASy TrEMBL
Match: A0A6J1EA75 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111430763 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.4e-133
Identity = 248/250 (99.20%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQL+TLVCHILILVLALVFTRSYASS
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLVCHILILVLALVFTRSYASS 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVF+AEVLSKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFSAEVLSKIP 240

Query: 241 MGALKEKKKD 251
           MGALKEKKKD
Sbjct: 241 MGALKEKKKD 250

[Close]

BLAST of Carg15097 vs. ExPASy TrEMBL
Match: A0A6J1JBF9 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482938 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.0e-129
Identity = 243/250 (97.20%), Postives = 247/250 (98.80%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQPGGLDSV +KISGKIDGYNSSSSSGSDD  PSKINAVKSHVFRLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVTDKISGKIDGYNSSSSSGSDDDQPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQL+TL+CHILILVLALVFTRSYASS
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLLCHILILVLALVFTRSYASS 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP
Sbjct: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240

Query: 241 MGALKEKKKD 251
           MGAL+EKKKD
Sbjct: 241 MGALQEKKKD 250

[Close]

BLAST of Carg15097 vs. ExPASy TrEMBL
Match: A0A0A0L7V4 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G363160 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.6e-103
Identity = 192/250 (76.80%), Postives = 222/250 (88.80%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQP   DSVI+  S KID + SSSSS SDD HPSK +AVK HV+RLFGRDKPVHTVLG
Sbjct: 1   MADQPAEPDSVIDNFSAKIDDHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADV LW+NKKNSAG+LGGATALWILFELLEYQL+TLVCHILI++LA+ F  SYA++
Sbjct: 61  GGKPADVFLWKNKKNSAGVLGGATALWILFELLEYQLITLVCHILIILLAIPFLWSYANT 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINK+PPQIPD RLPED LL+VV++LRIEIN +IS LR++ASGRDL+KFL AF+GLW+LS
Sbjct: 121 FINKTPPQIPDVRLPEDCLLQVVTSLRIEINRIISTLRDVASGRDLRKFLSAFLGLWILS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           + GSWCNFLTLLY   +LLHTVPVLYEKY+DQVD FAEKALIE+KKQYA F+A+VLSKIP
Sbjct: 181 IAGSWCNFLTLLYMCFILLHTVPVLYEKYEDQVDPFAEKALIELKKQYAEFDAKVLSKIP 240

Query: 241 MGALKEKKKD 251
           +G L+EKKKD
Sbjct: 241 LGPLQEKKKD 250

[Close]

BLAST of Carg15097 vs. ExPASy TrEMBL
Match: A0A6J1G1W3 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449937 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.7e-98
Identity = 193/249 (77.51%), Postives = 215/249 (86.35%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQP   DSVI+KIS KI    SSSSS SDDG  SKI+AVKS VFRLFGRDKPVHTVLG
Sbjct: 1   MADQPRERDSVIDKISDKIGDCISSSSSDSDDGLHSKIDAVKSRVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADV LWRNKKNSAGILG ATALWI+FEL+EYQL+TLVCH+LIL+LA++F  SYA++
Sbjct: 61  GGKPADVFLWRNKKNSAGILGVATALWIVFELIEYQLITLVCHLLILLLAIMFLWSYANT 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINK+PPQIPD +LPE   L+ VSALRIEIN  IS LR IA GRDLKKFL  F+GLWVLS
Sbjct: 121 FINKTPPQIPDMKLPEVCFLQFVSALRIEINRAISILRGIACGRDLKKFLSVFLGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           +VGSWCNFLTLLY S+VLLHTVPV YEKY+DQVD  AEKA IE KKQYAVF+A+VLSKIP
Sbjct: 181 VVGSWCNFLTLLYISIVLLHTVPVFYEKYEDQVDPLAEKAWIEFKKQYAVFDAKVLSKIP 240

Query: 241 MGALKEKKK 250
           +GAL+EKKK
Sbjct: 241 IGALQEKKK 249

[Close]

BLAST of Carg15097 vs. ExPASy TrEMBL
Match: A0A6J1HXQ1 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467592 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.5e-98
Identity = 193/249 (77.51%), Postives = 215/249 (86.35%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MADQP   DSVI+KIS KI    SSSSS SDDG  SKI+AVKS VFRLFGRDKPVHTVLG
Sbjct: 1   MADQPRERDSVIDKISDKIGDCISSSSSDSDDGLHSKIDAVKSRVFRLFGRDKPVHTVLG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPADV LWRNKKNSAGILG ATALWI+FEL+EYQL+TLVCH+LIL+LA++F  SYA++
Sbjct: 61  GGKPADVFLWRNKKNSAGILGVATALWIVFELIEYQLITLVCHLLILLLAIMFLWSYANT 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FINK+PPQIPD +LPE   L+ VSALRIEIN  IS LR IA GRDLKKFL  F+GLWVLS
Sbjct: 121 FINKTPPQIPDVKLPEVCFLQFVSALRIEINRAISILRGIACGRDLKKFLSVFLGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIP 240
           +VGSWCNFLTLLY S+VLLHTVPV YEKY+DQVD  AEKA IE KKQYAVF+A+VLSKIP
Sbjct: 181 VVGSWCNFLTLLYISIVLLHTVPVFYEKYEDQVDPLAEKAWIEFKKQYAVFDAKVLSKIP 240

Query: 241 MGALKEKKK 250
           +GAL+EKKK
Sbjct: 241 IGALQEKKK 249

[Close]

BLAST of Carg15097 vs. TAIR 10
Match: AT4G23630.1 (VIRB2-interacting protein 1 )

HSP 1 Score: 285.8 bits (730), Expect = 3.3e-77
Identity = 149/252 (59.13%), Postives = 196/252 (77.78%), Query Frame = 0


Query: 9   DSVINKISGKI--DGYNSSSSSGSDDGHPSK--------INAVKSHVFRLFGRDKPVHTV 68
           +S+++KIS KI   G +SSSSS SDD    K         +++KS V+RLFGR++PVH V
Sbjct: 24  ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83

Query: 69  LGGGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYA 128
           LGGGKPAD+ +W+NKK S G+LGGATA W++FEL+EY L+TL+CH++I+VLA++F  S A
Sbjct: 84  LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143

Query: 129 SSFINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWV 188
           + FINKSPP+IP+  +PE+ +L++ S LRIEIN   S+LR IASGRDLKKFL A  GLWV
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203

Query: 189 LSMVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSK 248
           LS++G   NFLTL Y ++VLL TVP+ Y+KY+D+VD   EKA+IE+KKQYAV + +VLSK
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263

Query: 249 IPMGALKEKKKD 251
           IP+G LK KKKD
Sbjct: 264 IPLGPLKNKKKD 275

[Close]

BLAST of Carg15097 vs. TAIR 10
Match: AT4G11220.1 (VIRB2-interacting protein 2 )

HSP 1 Score: 278.1 bits (710), Expect = 7.0e-75
Identity = 142/248 (57.26%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 9   DSVINKISGKIDGY-NSSSSSGSDDGHPSKIN-----AVKSHVFRLFGRDKPVHTVLGGG 68
           +S++ K+S KI    +SSSSS SDD +  K +     ++KS V+RLFGR++PVH VLGGG
Sbjct: 24  ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83

Query: 69  KPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFI 128
           KPAD+ +W++KK S G+ GGAT  W+LFEL+EY L+TL+CH++I+ LA++F  S A+ FI
Sbjct: 84  KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143

Query: 129 NKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMV 188
           +KSPP+IP+  +PE+ LL++ S LRIEIN  IS+LR IASGRD+KKFL A  GLWVLS++
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203

Query: 189 GSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMG 248
           G   +FLTL Y ++VLL TVP+ Y+KY+D+VD++ EKA+ E+KKQYAV +A+V SKIP G
Sbjct: 204 GGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRG 263

Query: 249 ALKEKKKD 251
            LK+KKKD
Sbjct: 264 PLKDKKKD 271

[Close]

BLAST of Carg15097 vs. TAIR 10
Match: AT1G64090.1 (Reticulan like protein B3 )

HSP 1 Score: 270.8 bits (691), Expect = 1.1e-72
Identity = 147/255 (57.65%), Postives = 186/255 (72.94%), Query Frame = 0


Query: 1   MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLG 60
           MA++    +S++ KIS KI G++ SSSS SD        ++K+ ++RLFGR++P+H + G
Sbjct: 1   MAEEHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFG 60

Query: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASS 120
           GGKPAD+ LWRNKK S G+LG AT  WILFELLEY L+TL  HI IL LA++F  S AS+
Sbjct: 61  GGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSAST 120

Query: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180
           FI+KSP  IP+  +PED +L++ S LRIEIN   + LR+IASGRDLKKFL    GLWVLS
Sbjct: 121 FIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLS 180

Query: 181 MVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVL---- 240
            VGS CNFLTL+Y + VLL T+PVLYEKY+D+VD F EKA+ E+KKQY  F+ +VL    
Sbjct: 181 KVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVM 240

Query: 241 SKIPMGALK-EKKKD 251
           SKIP GA    KKKD
Sbjct: 241 SKIPKGAFAFIKKKD 255

[Close]

BLAST of Carg15097 vs. TAIR 10
Match: AT2G46170.1 (Reticulon family protein )

HSP 1 Score: 269.2 bits (687), Expect = 3.2e-72
Identity = 137/241 (56.85%), Postives = 184/241 (76.35%), Query Frame = 0


Query: 9   DSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLGGGKPADVL 68
           +S++ KIS KI  ++SSSSS S+   P   +AVK+ ++R+FGR+KPVH VLGGGKPADV 
Sbjct: 13  ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query: 69  LWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFINKSPPQ 128
           LWR+KK S  +LG ATA+W+LFEL+EY L++L+CHI IL L  +F  S A + INK+ PQ
Sbjct: 73  LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query: 129 IPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMVGSWCNF 188
           IP+  +PE+  L V S+LR E+N     LR+IA GRDLKKFL   +GLW++S+VG+W NF
Sbjct: 133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

Query: 189 LTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMGALKEKK 248
           LTL+Y   V+LHTVP+LYEK++D+VD  AEKA+ E++KQY VF+ +VLSKIP+ +LK K 
Sbjct: 193 LTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKA 252

Query: 249 K 250
           K
Sbjct: 253 K 253

[Close]

BLAST of Carg15097 vs. TAIR 10
Match: AT3G61560.1 (Reticulon family protein )

HSP 1 Score: 269.2 bits (687), Expect = 3.2e-72
Identity = 135/239 (56.49%), Postives = 182/239 (76.15%), Query Frame = 0


Query: 9   DSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLGGGKPADVL 68
           +S++ KI+ KI  ++SSSSS S+   P   +A+K+ ++RLFGR+KPVH VLGGG PADV 
Sbjct: 13  ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query: 69  LWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFINKSPPQ 128
           LWR+KK SA +LG ATA+W+LFEL+EY  ++LVCHILI  LA +F  S A +F+NK+PP+
Sbjct: 73  LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132

Query: 129 IPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMVGSWCNF 188
           IP+  + E+  L +VSALR E+N     LR+IA GRDLKKFL    GLW++S+VG+W NF
Sbjct: 133 IPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNF 192

Query: 189 LTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMGALKEK 248
           LTL+Y   V+LHTVP+LYEK++D+VD  AEK L E+KK Y VF+ +VLSK+P+ +LK K
Sbjct: 193 LTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251

The following BLAST results are available for this feature:

BLAST of Carg15097 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014737.1	3.1e-133	100.00	Reticulon-like protein B1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922933.1	1.5e-132	99.20	reticulon-like protein B1 [Cucurbita moschata] >XP_022922934.1 reticulon-like pr...	[more]
KAG6576686.1	1.7e-131	98.80	Reticulon-like protein B1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023553084.1	2.9e-131	98.00	reticulon-like protein B1 [Cucurbita pepo subsp. pepo] >XP_023553085.1 reticulon...	[more]
XP_022984754.1	2.1e-129	97.20	reticulon-like protein B1 [Cucurbita maxima]	[more]

BLAST of Carg15097 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUR3	4.7e-76	59.13	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
Q9SUT9	9.8e-74	57.26	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
Q9SH59	1.6e-71	57.65	Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1	[more]
O82352	4.5e-71	56.85	Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1	[more]
Q6DBN4	4.5e-71	56.49	Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1	[more]

BLAST of Carg15097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EA75	7.4e-133	99.20	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111430763 PE=4 SV=1	[more]
A0A6J1JBF9	1.0e-129	97.20	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482938 PE=4 SV=1	[more]
A0A0A0L7V4	3.6e-103	76.80	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G363160 PE=4 SV=1	[more]
A0A6J1G1W3	2.7e-98	77.51	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449937 PE=4 SV=1	[more]
A0A6J1HXQ1	3.5e-98	77.51	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467592 PE=4 SV=1	[more]

BLAST of Carg15097 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23630.1	3.3e-77	59.13	VIRB2-interacting protein 1	[more]
AT4G11220.1	7.0e-75	57.26	VIRB2-interacting protein 2	[more]
AT1G64090.1	1.1e-72	57.65	Reticulan like protein B3	[more]
AT2G46170.1	3.2e-72	56.85	Reticulon family protein	[more]
AT3G61560.1	3.2e-72	56.49	Reticulon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 65..220 e-value: 1.5E-56 score: 190.7
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 64..250 score: 45.569397
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 8..250
None	No IPR available	PANTHER	PTHR10994:SF156	RETICULON-LIKE PROTEIN	coord: 8..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15097-RA	Carg15097-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane