Carg15013 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15013
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	la-related protein 6A
Location	Carg_Chr07: 619949 .. 624820 (+)
RNA-Seq Expression	Carg15013
Synteny	Carg15013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGAGAAACAGAGGGCGTGAAGGTACTTTGGGTTCTAAGCGCCCAACGCTGTTCTCCTCCTCACCATGGCGGGTGACGAGCCTCCATCCTCCGCTTCCACCGCTGCTGTTTCTTGCTCCGTCGGCGAGTCCATCCCGTCGCCTCTGACACAAGATCCTGTCGGATCGCCTAGTCACGATGTGCCAGAGATTCAATCATTAACTTCCGAAGATGATCATGAACAAGGACACGGGGGGAATCACGATCACGCAGTTAGGGCCGCTGTTCTTTCGGAGGATCTGAAACAGAGGATCATTAAGCAGGTAACGCTACCGCCTCTCCCCTCCTTACTCTCCACCGTGCTGCAAATTTGAACCTCGAATTTATTTCCTTCGTTAGGTTTGGTTCGGCATGAGGTTCTTGAATCTCCTATCTGGATTGCTATGGAAATTTGTGGTTATAATTTTTCTTAAAAACCACTTCCTGGACTAGGAGCTTGGATTCGGAATTGAGAATCAGTTTTCAAATCCGTTTGCCTTCATGAACCTGTATTCGATTTTCCTATATGACTTTTTGTATATGTACTTACATCGCTTAGTCCAAATAGTAAGGAAGCTTATGGTTCGGTTATCAACTTCAAGGAGCGATATGTCATGTAATTTGTGGTTTGTTACGCGACCGTAAGTAGTCTTTTAGTATAAGACCTGAAGGGAGCGTTTAGATTGTAATAATGATTACGTTTCATCTAGTTTCTCTACAACTTTGTTAAATTTATAGAGAGTGACATCATGGTCCTTATGATTGGTCTGAATGTCTTCGCAGGTTGAGTACTATTTTAGCAATGAAAATTTGCCCACTGATAAGTACATGTTGGGATTAATCAAGAAGAACAAGGAGGGTTTTGGTATGTTACTTTGGGCATTATTCTGTTTTATTGAGATTTTATTATCTTTAGATGGAAATGAAAACTCCCAGTAGTATTGACCTTCTTTAAGGGGTTGAACATGCACAACAAGTCGTGAGAAAATTTTGTTTTGTTTTGTTTTTGTATTTTTATCAATAGTTCATCCGTGAATAAGTAAGCAATAAGTAGTATGTTACAGAATTCTTTGAAAGAGTTTTCTCATGAGCCATACTTGAATAAAACTATTGGAACTAAGGAATATTTATGTACTCTTAAGTATCTTTTCTACTGTATGAATAATGAAACCAAGAAGTTTTCAATACTCTCAGTACGTTGTTGATGTGGATTGCCTTGAAAAATTGCAATTGAGCTTTCCCAAATATTTTTTATTCATGGTCTAATTTGACAACATTTTGCTATGGATAAAATTCAGGAAAGAACCCATTGTATAGGAAATACTTTAGGAAGTTATCCAGGGGCATCCTGGATTGCCTATCTGCATAGTTTAGGCATCTAGGCCTTCCAACTGTTTTAGTGGAAGGACATGCTATTTGTGTACGAGTTAGTTTTAGTATCAAACTTGAAACTAAGATTGGTATTACAAAAGGGATTACACCTCAGGGATGGCTCAGATGTTGTAACTGTTAATCCTTGGGAGTTCAATCATCTGAAACACTCTGAGATTACTTGACATAACTAGTTGTGTGTGTGTGTGTGTGTGTGTGTATTATTCTTTCCCATAACCTTGACATTAATGTCAATTTTATTGAATGGTTATATTTTTCATGAAAACTCGGCATGAAATGTGATGGGGTGATGATCCATGTAGGCACTTTGGACTGTTCTGTCTAAATTAAGTGTGGCTGATTGCTGATTGTTTCCTTCTCTATTCCTGAAATTATAGCCTTTGACTTTTTCCATAGATTTTTTCACGTAAAGGACTAGAACAAACTAAGGATAAATTGATTATCTCCCAATGGTTCTAGCCTTTGCTGATTTTTTGACATTGCCTGCTTGGCTTCACCTTTTGCTGATTATCTCCCAATGATTCTAGCCTTCGCTGGTTATCTCCCAATTGATTATCTCTTCTAATGGCATTCCTATCACTAGCTCGTATGCAGTGTAAATAGTTATTGTGGGGCACTGGATTCTCACATTTGCTTGCTCATATGTTCATACTTGTTTCTTTATACATATTTGAAGTACGAAACTGAGGCTGTCCATATCATATTTTTCCTTTTTTATCCTCTTCATTTTTGTTCTTTGCTATCTCTCTCTCTCTCTCTTTTTTTTTTTCTTTTTTTTGTCCAATGATTCTGATTTTTAGTAATCAATTGTACTGTTATCAATGCACAAATAAGTTATATTCATTTTCTCTTTATTTTTCTAGTTCCTGTTGCTATTATTGCTGCGTTCAAGAGGATGAAAAAACTTACTCAAGATCATTCATTTATCGCTGCTGCACTGAGGGAATCCTCTGTTCTTGTAAGATACTCCATGCTCCCTTTAATTGCACAAGGCCATGAGCACATGTTAATTTGCCTGCCAATTGCAGGTCGTAAGTCCTAATGGGAAGAAAGTCAAGCGACTCCACCCTATTCCATTGCCTGAGACTAGGGATCCTAAGGTACTTGCTTGTCTACTTGTGAAATCAACAATTTATGTGTAACTTATGGTAATCCTATTACATTTCTTTGTGGAGTATAGTTATTTACCATTTTGGTAGAAAATTTACCTGAAGATCACTCAGAGGAGAATATCCAACGAATTTTTGGAGCAGCTGGACGGTATGCTATTCTTTCTTCCAAAACTATGTTTTTCACGAGAAAAAAAAAAAAAAAAAGTTTCCTTCTTCACAGCATGATTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTGTATTTTTAGCATAAAAAGTATCACCATTTGTGACCCACATGTGGTAGAGAAGTCAGGGAAAAGCAGCAAGGGTGGTGTGCTGATCAGTAATAAGGTATATTGTATAACCAACTGATAGAAATAAAATATTTCAGTTTTTTATTAAAGCGGACATAGTGATGATATATTTGGTTAGTACTCATGCCTTCCCATTTGAGCTCTAGTAATAATGACTCTAATGACAGTGGTTTATGTGGGTGGCCATTGTGCTGTCTGTCTCTCTTTATATTCGCACATTAACCATACCAGAAGTTTTTTTTTTTTTTTTTTTTCGGTAGAATGTGAAGAGGAAAACTGTGGATGTTATCACTTTTTTCACGATCTGTTTTATTTTTAATTCCTAATTCTAAGAAAAAAATATTGTAATTTTTCATTGATTAGTTTTTATTTTGTTAAAATCATCATAAGCACACTACATGGTAGGGGGAGGACATTAATGAAAAGGTAGGTAGAACATGAAGAAGGGTTTTCTTTCACCAGCATGTTGGGACGTGCAGATAAGGAGAGCGGATTAATACCAACGCCCAGTTTGATAATGCTGGTGCAGAGATAATTGTGTGTGCAATGTTCAATGCAGGATGTTGATTGAACTTCTGAGTGTTCCACTCTTTTCCTTATTATAAAAGCCAAGAGAAGAAAGCAATAATATCCACTGAATTTTGTATCTTCTTTTTTTCTTCATAAAAATCTTTCTGATGCCATGTTTATGTTATATAATAGTTGGGTGATGCAACTATACGTTGTCTCAGACTTCTTGATGTTAATTGAATTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCATCCGAACTATGTTTACTCATTCTCGTTTACTATGTATAGTTGCATGCTCTTGTGGAGTATGAAACTTTGGAAGCTTCTGAAAAAGCTGTGAGTGATCAGATCCACGCTCTACTTACTTTAACTTATTAAACTTTTACCGTGTTTGATTTGATATTGATAGTTGTTTTTCTGATGTCATAAGGTGGCTACTTTAAATGATGAACGAGATTGGAGAAATGGCATGCGTGTTAAGCCTTTTAAGCATCTGGTACTGTATCTCATTTTACCTCACTCATATATCAAGTTGAGTGTGTTTACAATACAGTTCTTTACTTCAGGTTAAGCATGGCCAGAAGAAACAACACTGGAGAGTATCCGACCCCGACAAGAATGGCACTGGGCGATTAACTGATCATTCTTGTCCTGACAAGAACAGCACTGGACGAACAACTGATCAAAATGTGGACGAAGAGATTCAGAACATAACTGAGCATCATGAGGACATGCCTGATGAGGAGGTTAATTTTGCTCTTGTACTTTCACTAAACCTAAAAAATCCTGAAATTTTCTATGAGATATGATTGCAAGGAAAAGCTTGTTATGATAACAATATCAACTTCGCCAATTTAGGAGGGCGATCATCAGCACAAGGATAAACATAGACATAGAGGTCGAAATCAAGGACGAACTAGAAGGCAAAAGTACAAGGGTGTCAATGCAATGGGTATTGATCTGATCTCGTCGTTTTAGAGTTCGAGTTATTGAGGATTTTGGCCAGCTAATCGTTTTGCTTTCTTCTAGGTCATGGAACTACAACCTCTGCTCATCACATCGAACTTCCAAAGCCACCCCCAGGCCCGAAAATGCCTGATGGAACTCGAGGGTTCACAATGGGGCGTGGGCGACCTCCAACCTCCAACCAAAGCTCATAGTGAGAATTTCGTGAGAGTGAGCCTGTAGAAATTTCACTTTCTATGTTTGTTTACATTGATTGATGGGTTTGGAAATATATACCATGATTGTGCATGCTCCTTGTGGTAAAACGCATCCTGGTATATTATGTTTGAATAGGTTGGCTAAATGTAACTTCTTCTAACCTCAAGCTTTTGGGTCTTAAGAAAAGCCATCTTGTATAATGTTTACCTGCACGGTAAATATTTTTATATGGTGATGTTGAATTATCTACCGCGTCTGCTGCTCATTCTCTCTCATTTATGGCATGTTAAATAATAATAATAATAATTTTAGAATGACCATAATTATT

mRNA sequence

CAGGAGAAACAGAGGGCGTGAAGGTACTTTGGGTTCTAAGCGCCCAACGCTGTTCTCCTCCTCACCATGGCGGGTGACGAGCCTCCATCCTCCGCTTCCACCGCTGCTGTTTCTTGCTCCGTCGGCGAGTCCATCCCGTCGCCTCTGACACAAGATCCTGTCGGATCGCCTAGTCACGATGTGCCAGAGATTCAATCATTAACTTCCGAAGATGATCATGAACAAGGACACGGGGGGAATCACGATCACGCAGTTAGGGCCGCTGTTCTTTCGGAGGATCTGAAACAGAGGATCATTAAGCAGGTTGAGTACTATTTTAGCAATGAAAATTTGCCCACTGATAAGTACATGTTGGGATTAATCAAGAAGAACAAGGAGGGTTTTGTTCCTGTTGCTATTATTGCTGCGTTCAAGAGGATGAAAAAACTTACTCAAGATCATTCATTTATCGCTGCTGCACTGAGGGAATCCTCTGTTCTTGTCGTAAGTCCTAATGGGAAGAAAGTCAAGCGACTCCACCCTATTCCATTGCCTGAGACTAGGGATCCTAAGTTATTTACCATTTTGGTAGAAAATTTACCTGAAGATCACTCAGAGGAGAATATCCAACGAATTTTTGGAGCAGCTGGACGCATAAAAAGTATCACCATTTGTGACCCACATGTGGTAGAGAAGTCAGGGAAAAGCAGCAAGGGTGGTGTGCTGATCAGTAATAAGTTGCATGCTCTTGTGGAGTATGAAACTTTGGAAGCTTCTGAAAAAGCTGTGGCTACTTTAAATGATGAACGAGATTGGAGAAATGGCATGCGTGTTAAGCCTTTTAAGCATCTGGTTAAGCATGGCCAGAAGAAACAACACTGGAGAGTATCCGACCCCGACAAGAATGGCACTGGGCGATTAACTGATCATTCTTGTCCTGACAAGAACAGCACTGGACGAACAACTGATCAAAATGTGGACGAAGAGATTCAGAACATAACTGAGCATCATGAGGACATGCCTGATGAGGAGGAGGGCGATCATCAGCACAAGGATAAACATAGACATAGAGGTCGAAATCAAGGACGAACTAGAAGGCAAAAGTACAAGGGTGTCAATGCAATGGGTCATGGAACTACAACCTCTGCTCATCACATCGAACTTCCAAAGCCACCCCCAGGCCCGAAAATGCCTGATGGAACTCGAGGGTTCACAATGGGGCGTGGGCGACCTCCAACCTCCAACCAAAGCTCATAGTGAGAATTTCGTGAGAGTGAGCCTGTAGAAATTTCACTTTCTATGTTTGTTTACATTGATTGATGGGTTTGGAAATATATACCATGATTGTGCATGCTCCTTGTGGTAAAACGCATCCTGGTATATTATGTTTGAATAGGTTGGCTAAATGTAACTTCTTCTAACCTCAAGCTTTTGGGTCTTAAGAAAAGCCATCTTGTATAATGTTTACCTGCACGGTAAATATTTTTATATGGTGATGTTGAATTATCTACCGCGTCTGCTGCTCATTCTCTCTCATTTATGGCATGTTAAATAATAATAATAATAATTTTAGAATGACCATAATTATT

Coding sequence (CDS)

ATGGCGGGTGACGAGCCTCCATCCTCCGCTTCCACCGCTGCTGTTTCTTGCTCCGTCGGCGAGTCCATCCCGTCGCCTCTGACACAAGATCCTGTCGGATCGCCTAGTCACGATGTGCCAGAGATTCAATCATTAACTTCCGAAGATGATCATGAACAAGGACACGGGGGGAATCACGATCACGCAGTTAGGGCCGCTGTTCTTTCGGAGGATCTGAAACAGAGGATCATTAAGCAGGTTGAGTACTATTTTAGCAATGAAAATTTGCCCACTGATAAGTACATGTTGGGATTAATCAAGAAGAACAAGGAGGGTTTTGTTCCTGTTGCTATTATTGCTGCGTTCAAGAGGATGAAAAAACTTACTCAAGATCATTCATTTATCGCTGCTGCACTGAGGGAATCCTCTGTTCTTGTCGTAAGTCCTAATGGGAAGAAAGTCAAGCGACTCCACCCTATTCCATTGCCTGAGACTAGGGATCCTAAGTTATTTACCATTTTGGTAGAAAATTTACCTGAAGATCACTCAGAGGAGAATATCCAACGAATTTTTGGAGCAGCTGGACGCATAAAAAGTATCACCATTTGTGACCCACATGTGGTAGAGAAGTCAGGGAAAAGCAGCAAGGGTGGTGTGCTGATCAGTAATAAGTTGCATGCTCTTGTGGAGTATGAAACTTTGGAAGCTTCTGAAAAAGCTGTGGCTACTTTAAATGATGAACGAGATTGGAGAAATGGCATGCGTGTTAAGCCTTTTAAGCATCTGGTTAAGCATGGCCAGAAGAAACAACACTGGAGAGTATCCGACCCCGACAAGAATGGCACTGGGCGATTAACTGATCATTCTTGTCCTGACAAGAACAGCACTGGACGAACAACTGATCAAAATGTGGACGAAGAGATTCAGAACATAACTGAGCATCATGAGGACATGCCTGATGAGGAGGAGGGCGATCATCAGCACAAGGATAAACATAGACATAGAGGTCGAAATCAAGGACGAACTAGAAGGCAAAAGTACAAGGGTGTCAATGCAATGGGTCATGGAACTACAACCTCTGCTCATCACATCGAACTTCCAAAGCCACCCCCAGGCCCGAAAATGCCTGATGGAACTCGAGGGTTCACAATGGGGCGTGGGCGACCTCCAACCTCCAACCAAAGCTCATAG

Protein sequence

MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHDHAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDERDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS

Homology

[Close]

BLAST of Carg15013 vs. NCBI nr
Match: KAG7026470.1 (La-related protein 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 771.2 bits (1990), Expect = 4.4e-219
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK
Sbjct: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360
           IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP
Sbjct: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360

Query: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           KPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 389

[Close]

BLAST of Carg15013 vs. NCBI nr
Match: KAG6594473.1 (La-related protein 6A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 769.6 bits (1986), Expect = 1.3e-218
Identity = 388/389 (99.74%), Postives = 389/389 (100.00%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK
Sbjct: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360
           IQNITEHHED+PDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP
Sbjct: 301 IQNITEHHEDVPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360

Query: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           KPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 389

[Close]

BLAST of Carg15013 vs. NCBI nr
Match: XP_022926363.1 (la-related protein 6A isoform X2 [Cucurbita moschata])

HSP 1 Score: 761.1 bits (1964), Expect = 4.5e-216
Identity = 384/389 (98.71%), Postives = 387/389 (99.49%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPS LTQDPVGSPSHDVPEIQS +SEDDHEQGHGGNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK
Sbjct: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           +DWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 QDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360
           IQNITEHHED+PDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP
Sbjct: 301 IQNITEHHEDVPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360

Query: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           KPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 389

[Close]

BLAST of Carg15013 vs. NCBI nr
Match: XP_022926362.1 (la-related protein 6A isoform X1 [Cucurbita moschata])

HSP 1 Score: 755.0 bits (1948), Expect = 3.2e-214
Identity = 384/394 (97.46%), Postives = 387/394 (98.22%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPS LTQDPVGSPSHDVPEIQS +SEDDHEQGHGGNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK
Sbjct: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           +DWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 QDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEE-----EGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 360
           IQNITEHHED+PDEE     EGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH
Sbjct: 301 IQNITEHHEDVPDEEVNFALEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 360

Query: 361 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 394

[Close]

BLAST of Carg15013 vs. NCBI nr
Match: XP_023002907.1 (la-related protein 6A isoform X2 [Cucurbita maxima])

HSP 1 Score: 746.5 bits (1926), Expect = 1.2e-211
Identity = 375/389 (96.40%), Postives = 382/389 (98.20%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGH GNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           H VRAAVLSEDLK RIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVA+IAAFKRMKK
Sbjct: 61  HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LT+DHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRI+ ITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           RDWRNG+RVKPFKHLVKHGQKKQHWR+S+PDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 RDWRNGVRVKPFKHLVKHGQKKQHWRLSNPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360
           IQNITEHHED+PDEEEGDHQHKDKH HRGRNQGRTRRQKYKGVN MGHGTTTSAHHIELP
Sbjct: 301 IQNITEHHEDVPDEEEGDHQHKDKHEHRGRNQGRTRRQKYKGVNGMGHGTTTSAHHIELP 360

Query: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           KPPPGPKMPDGTRGFTMGRGRP TSNQSS
Sbjct: 361 KPPPGPKMPDGTRGFTMGRGRPATSNQSS 389

[Close]

BLAST of Carg15013 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.2e-91
Identity = 194/386 (50.26%), Postives = 257/386 (66.58%), Query Frame = 0


Query: 21  ESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHE--------QGHGGNHDHAVRAAVLSEDL 80
           +S P   + D V     ++P +     + DHE        Q HG N        V  ++L
Sbjct: 44  DSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDEL 103

Query: 81  KQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSFIAAAL 140
            Q+II+QVEYYFS+ENLPTDK++L  +K+NK+GFVP++ IA F +MKKLT+DH+ I +AL
Sbjct: 104 NQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSAL 163

Query: 141 RESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAAGRIKS 200
           +ESS LVVS + KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG IKS
Sbjct: 164 KESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKS 223

Query: 201 ITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDERDWRNGMRVKPF 260
           ++ICDP+ VE+S K  K    I  +LHA VEYET+EA+EKA ATLN+E+DWRNG+RVK  
Sbjct: 224 VSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLL 283

Query: 261 KHLV-KHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDM 320
           +    K  Q++   R  D +K+ TGR+ D +  +KN   R        E QN   HH D 
Sbjct: 284 EQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNHRLHHSDN 343

Query: 321 PDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHH-----IELPKPPPGP 380
           P +++G +  KDK+ ++GR  G+ RRQ ++G N +GHGT +S+ H     +E+ K PPGP
Sbjct: 344 PADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGP 403

Query: 381 KMPDGTRGFTMGRGR---PPTSNQSS 390
           +MPDGTRGFTMGRG+   PPTS Q+S
Sbjct: 404 RMPDGTRGFTMGRGKAIPPPTSTQTS 419

[Close]

BLAST of Carg15013 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-44
Identity = 126/331 (38.07%), Postives = 183/331 (55.29%), Query Frame = 0


Query: 67  VLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHS 126
           +LS+DL+ +I+KQVEY F++ +L  ++ +   I K+ EG+VPV+ IA+ K++K LT +H 
Sbjct: 139 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 198

Query: 127 FIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGA 186
            ++ ALR SS LVVS +GKKVKR       +  + +  T++ ENLP+DHS +N+++IFG 
Sbjct: 199 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 258

Query: 187 AGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDERDWRNG 246
            G +K+I IC  H  E +    KG  L+SNK+HAL+EY+    ++KAV  LNDER+WR G
Sbjct: 259 VGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKG 318

Query: 247 MRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEEIQNITE 306
           +RV   + L++   K     V    +N  G L D   P   S         D    ++TE
Sbjct: 319 LRV---RLLLRCSPKS----VLKNRRNFDGILIDDELPSYES-------GEDSPRLHLTE 378

Query: 307 HHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHG-----------TTTSAH 366
              D     +GD  +      +GR +GR R  +   V   G              +  +H
Sbjct: 379 SQLD----NDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSH 438

Query: 367 HIELPK-PPPGPKMPDGTRGFTMGRGRPPTS 386
               PK    GP+MPDGTRGFTMGRG+P  S
Sbjct: 439 ESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

[Close]

BLAST of Carg15013 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-42
Identity = 122/357 (34.17%), Postives = 192/357 (53.78%), Query Frame = 0


Query: 68  LSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSF 127
           L ED  Q+I+ QVEYYFS+ NL T  +++  I K+ EG+VP+ ++A+FK++K +  ++S 
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248

Query: 128 IAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAA 187
           +AA L+ S+ L VS +GKKV+R+ PI      + +   I+ ENLPEDH  +N+ +IF   
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 308

Query: 188 GRIKSITICDPH--------VVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLND 247
           G +K+I  C P             + KS   G L SNK+HA VEYE +E +E+AV  L++
Sbjct: 309 GSVKNIRTCQPQNNGSGAPPAARSAAKSD--GTLFSNKVHAFVEYEIVELAERAVTELSE 368

Query: 248 ERDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDE 307
             +WR+G++V   + ++KH Q K+  +     + G     +H   D  ++ +   +   +
Sbjct: 369 AGNWRSGLKV---RLMLKH-QTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSD 428

Query: 308 EIQNITEHH--EDMPDEEEGDHQ--HKDKHRHRGRNQGRTRRQKYKGVNA---------- 367
           +     + H  E    E++G+ +   + K R+RGR +GR R Q ++  N           
Sbjct: 429 DCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNH 488

Query: 368 --MGHGTTTSAHH--------------IELP----KPPPGPKMPDGTRGFTMGRGRP 383
              G G     HH              +E P    + PPGP+MPDGTRGF+MGRG+P
Sbjct: 489 NHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKP 539

[Close]

BLAST of Carg15013 vs. ExPASy Swiss-Prot
Match: Q5XI01 (La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-19
Identity = 58/164 (35.37%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 76  IIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSFIAAALRES 135
           I KQV+++F + NL  D+++   I+K+++G+V ++++ +F +MKKLT D   IA AL+ S
Sbjct: 33  IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92

Query: 136 SVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAAGRIKSITI 195
           SV+ +   G +++R  P+     +D +  T+ VE LP++ +   I+R+FG  G +  I+I
Sbjct: 93  SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 152

Query: 196 CDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLND 240
             PH   KS    KG         A VE+ET E + KA+  LN+
Sbjct: 153 --PHY--KSTGDPKG--------FAFVEFETKEQAAKAIEFLNN 183

[Close]

BLAST of Carg15013 vs. ExPASy Swiss-Prot
Match: Q7ZWE3 (La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.3e-19
Identity = 60/171 (35.09%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 70  EDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSFIA 129
           + L   + KQVE++F + NL  D++M  +I+++++G++ +A++  F RMK LT D   IA
Sbjct: 40  KQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIA 99

Query: 130 AALRESSVLVVSPNGKKVKRLHPIPLPET-RDPKLFTILVENLPEDHSEENIQRIFGAAG 189
            AL+ S+++ V+  G +++R    PL ET +D    T+ VE LP+  +   ++R+F   G
Sbjct: 100 RALKNSTIVEVNDEGTRIRRKE--PLGETPKDVDSRTVYVELLPKTVTHIWLERVFSKCG 159

Query: 190 RIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLND 240
            +  I+I  P    KS + SKG         A VE+ET E ++KAV  LN+
Sbjct: 160 HVVYISI--PRY--KSTRHSKG--------FAFVEFETQEQAQKAVEMLNN 196

[Close]

BLAST of Carg15013 vs. ExPASy TrEMBL
Match: A0A6J1EHU6 (la-related protein 6A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433532 PE=4 SV=1)

HSP 1 Score: 761.1 bits (1964), Expect = 2.2e-216
Identity = 384/389 (98.71%), Postives = 387/389 (99.49%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPS LTQDPVGSPSHDVPEIQS +SEDDHEQGHGGNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK
Sbjct: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           +DWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 QDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360
           IQNITEHHED+PDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP
Sbjct: 301 IQNITEHHEDVPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360

Query: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           KPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 389

[Close]

BLAST of Carg15013 vs. ExPASy TrEMBL
Match: A0A6J1EEB2 (la-related protein 6A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433532 PE=4 SV=1)

HSP 1 Score: 755.0 bits (1948), Expect = 1.6e-214
Identity = 384/394 (97.46%), Postives = 387/394 (98.22%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPS LTQDPVGSPSHDVPEIQS +SEDDHEQGHGGNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK
Sbjct: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           +DWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 QDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEE-----EGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 360
           IQNITEHHED+PDEE     EGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH
Sbjct: 301 IQNITEHHEDVPDEEVNFALEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 360

Query: 361 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS
Sbjct: 361 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 394

[Close]

BLAST of Carg15013 vs. ExPASy TrEMBL
Match: A0A6J1KKW8 (la-related protein 6A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=4 SV=1)

HSP 1 Score: 746.5 bits (1926), Expect = 5.6e-212
Identity = 375/389 (96.40%), Postives = 382/389 (98.20%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGH GNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           H VRAAVLSEDLK RIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVA+IAAFKRMKK
Sbjct: 61  HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LT+DHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRI+ ITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           RDWRNG+RVKPFKHLVKHGQKKQHWR+S+PDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 RDWRNGVRVKPFKHLVKHGQKKQHWRLSNPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360
           IQNITEHHED+PDEEEGDHQHKDKH HRGRNQGRTRRQKYKGVN MGHGTTTSAHHIELP
Sbjct: 301 IQNITEHHEDVPDEEEGDHQHKDKHEHRGRNQGRTRRQKYKGVNGMGHGTTTSAHHIELP 360

Query: 361 KPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           KPPPGPKMPDGTRGFTMGRGRP TSNQSS
Sbjct: 361 KPPPGPKMPDGTRGFTMGRGRPATSNQSS 389

[Close]

BLAST of Carg15013 vs. ExPASy TrEMBL
Match: A0A6J1KMM2 (la-related protein 6A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=4 SV=1)

HSP 1 Score: 740.3 bits (1910), Expect = 4.0e-210
Identity = 375/394 (95.18%), Postives = 382/394 (96.95%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGH GNHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           H VRAAVLSEDLK RIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVA+IAAFKRMKK
Sbjct: 61  HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LT+DHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI
Sbjct: 121 LTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           QRIFGAAGRI+ ITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE
Sbjct: 181 QRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
           RDWRNG+RVKPFKHLVKHGQKKQHWR+S+PDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE
Sbjct: 241 RDWRNGVRVKPFKHLVKHGQKKQHWRLSNPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300

Query: 301 IQNITEHHEDMPDEE-----EGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 360
           IQNITEHHED+PDEE     EGDHQHKDKH HRGRNQGRTRRQKYKGVN MGHGTTTSAH
Sbjct: 301 IQNITEHHEDVPDEEVNSALEGDHQHKDKHEHRGRNQGRTRRQKYKGVNGMGHGTTTSAH 360

Query: 361 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQSS 390
           HIELPKPPPGPKMPDGTRGFTMGRGRP TSNQSS
Sbjct: 361 HIELPKPPPGPKMPDGTRGFTMGRGRPATSNQSS 394

[Close]

BLAST of Carg15013 vs. ExPASy TrEMBL
Match: A0A6J1IUP2 (la-related protein 6A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111478735 PE=4 SV=1)

HSP 1 Score: 617.8 bits (1592), Expect = 3.0e-173
Identity = 316/386 (81.87%), Postives = 343/386 (88.86%), Query Frame = 0


Query: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60
           MAGDEPP S+    +S SV ESIPSP  QDPVGSPS DVPEIQSL SEDDH+QG   +HD
Sbjct: 1   MAGDEPPISSYPDVISSSVSESIPSPPRQDPVGSPSRDVPEIQSLASEDDHDQGLREHHD 60

Query: 61  HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKK 120
           HAV+AAVLSEDLK+RIIKQVEYYFS+ENLPTDK++LGLIKKNK+GFVP+AIIAAFKRMKK
Sbjct: 61  HAVKAAVLSEDLKRRIIKQVEYYFSDENLPTDKHLLGLIKKNKDGFVPIAIIAAFKRMKK 120

Query: 121 LTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENI 180
           LTQDH+FI AALRESSVLVVS NGKKVKRLHPIPLPETRDPK+FTILVENLPEDHSEENI
Sbjct: 121 LTQDHTFITAALRESSVLVVSSNGKKVKRLHPIPLPETRDPKVFTILVENLPEDHSEENI 180

Query: 181 QRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDE 240
           +RIFG AG I+SIT+ DPH+V+K GKSSKG VLISNKLHALVEYE+LEA EKAVATLNDE
Sbjct: 181 KRIFGVAGHIRSITVYDPHMVDKMGKSSKGDVLISNKLHALVEYESLEACEKAVATLNDE 240

Query: 241 RDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEE 300
            DWRNGMRVKP KHL KHGQ+KQHWR  DPDKN T R  D + PDKNS+GR TDQN DEE
Sbjct: 241 HDWRNGMRVKPLKHLSKHGQRKQHWRGPDPDKNFTWRTADQNGPDKNSSGRITDQNGDEE 300

Query: 301 IQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHHIELP 360
           IQNITEHH+D+PDEEE D+QHKDKH +RGRNQGRTRRQKYK VN  GHG TTSAHHIEL 
Sbjct: 301 IQNITEHHDDVPDEEEVDYQHKDKHGNRGRNQGRTRRQKYKSVNGTGHGITTSAHHIELS 360

Query: 361 KPPPGPKMPDGTRGFTMGRGRPPTSN 387
           KPPPGPKMPDGTRGFTMGRGRP TS+
Sbjct: 361 KPPPGPKMPDGTRGFTMGRGRPLTSS 386

[Close]

BLAST of Carg15013 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 338.2 bits (866), Expect = 8.8e-93
Identity = 194/386 (50.26%), Postives = 257/386 (66.58%), Query Frame = 0


Query: 21  ESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHE--------QGHGGNHDHAVRAAVLSEDL 80
           +S P   + D V     ++P +     + DHE        Q HG N        V  ++L
Sbjct: 44  DSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDEL 103

Query: 81  KQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSFIAAAL 140
            Q+II+QVEYYFS+ENLPTDK++L  +K+NK+GFVP++ IA F +MKKLT+DH+ I +AL
Sbjct: 104 NQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSAL 163

Query: 141 RESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAAGRIKS 200
           +ESS LVVS + KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG IKS
Sbjct: 164 KESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKS 223

Query: 201 ITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDERDWRNGMRVKPF 260
           ++ICDP+ VE+S K  K    I  +LHA VEYET+EA+EKA ATLN+E+DWRNG+RVK  
Sbjct: 224 VSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLL 283

Query: 261 KHLV-KHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDM 320
           +    K  Q++   R  D +K+ TGR+ D +  +KN   R        E QN   HH D 
Sbjct: 284 EQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNHRLHHSDN 343

Query: 321 PDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAHH-----IELPKPPPGP 380
           P +++G +  KDK+ ++GR  G+ RRQ ++G N +GHGT +S+ H     +E+ K PPGP
Sbjct: 344 PADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGP 403

Query: 381 KMPDGTRGFTMGRGR---PPTSNQSS 390
           +MPDGTRGFTMGRG+   PPTS Q+S
Sbjct: 404 RMPDGTRGFTMGRGKAIPPPTSTQTS 419

[Close]

BLAST of Carg15013 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 266.2 bits (679), Expect = 4.3e-71
Identity = 151/304 (49.67%), Postives = 198/304 (65.13%), Query Frame = 0


Query: 21  ESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHE--------QGHGGNHDHAVRAAVLSEDL 80
           +S P   + D V     ++P +     + DHE        Q HG N        V  ++L
Sbjct: 44  DSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDEL 103

Query: 81  KQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSFIAAAL 140
            Q+II+QVEYYFS+ENLPTDK++L  +K+NK+GFVP++ IA F +MKKLT+DH+ I +AL
Sbjct: 104 NQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSAL 163

Query: 141 RESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAAGRIKS 200
           +ESS LVVS + KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG IKS
Sbjct: 164 KESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKS 223

Query: 201 ITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDERDWRNGMRVKPF 260
           ++ICDP+ VE+S K  K    I  +LHA VEYET+EA+EKA ATLN+E+DWRNG+RVK  
Sbjct: 224 VSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLL 283

Query: 261 KHLV-KHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDM 316
           +    K  Q++   R  D +K+ TGR+ D +  +KN   R        E QN   HH D 
Sbjct: 284 EQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNHRLHHSDN 337

[Close]

BLAST of Carg15013 vs. TAIR 10
Match: AT5G46250.3 (RNA-binding protein )

HSP 1 Score: 266.2 bits (679), Expect = 4.3e-71
Identity = 151/304 (49.67%), Postives = 198/304 (65.13%), Query Frame = 0


Query: 21  ESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHE--------QGHGGNHDHAVRAAVLSEDL 80
           +S P   + D V     ++P +     + DHE        Q HG N        V  ++L
Sbjct: 44  DSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDEL 103

Query: 81  KQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSFIAAAL 140
            Q+II+QVEYYFS+ENLPTDK++L  +K+NK+GFVP++ IA F +MKKLT+DH+ I +AL
Sbjct: 104 NQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSAL 163

Query: 141 RESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAAGRIKS 200
           +ESS LVVS + KKVKRL   PLPE RDPK+FT+LVENLPEDHS ENI+ IFG AG IKS
Sbjct: 164 KESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKS 223

Query: 201 ITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDERDWRNGMRVKPF 260
           ++ICDP+ VE+S K  K    I  +LHA VEYET+EA+EKAV TLN+E+DWRNG+RVK  
Sbjct: 224 VSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAVTTLNNEQDWRNGLRVKLL 283

Query: 261 KHLV-KHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEEIQNITEHHEDM 316
           +    K  Q++   R  D +K+ TGR+ D +  +KN   R        E QN   HH D 
Sbjct: 284 EQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTR--------EHQNHRLHHSDN 337

[Close]

BLAST of Carg15013 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 182.2 bits (461), Expect = 8.1e-46
Identity = 126/331 (38.07%), Postives = 183/331 (55.29%), Query Frame = 0


Query: 67  VLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHS 126
           +LS+DL+ +I+KQVEY F++ +L  ++ +   I K+ EG+VPV+ IA+ K++K LT +H 
Sbjct: 139 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 198

Query: 127 FIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGA 186
            ++ ALR SS LVVS +GKKVKR       +  + +  T++ ENLP+DHS +N+++IFG 
Sbjct: 199 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 258

Query: 187 AGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLNDERDWRNG 246
            G +K+I IC  H  E +    KG  L+SNK+HAL+EY+    ++KAV  LNDER+WR G
Sbjct: 259 VGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKG 318

Query: 247 MRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDEEIQNITE 306
           +RV   + L++   K     V    +N  G L D   P   S         D    ++TE
Sbjct: 319 LRV---RLLLRCSPKS----VLKNRRNFDGILIDDELPSYES-------GEDSPRLHLTE 378

Query: 307 HHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHG-----------TTTSAH 366
              D     +GD  +      +GR +GR R  +   V   G              +  +H
Sbjct: 379 SQLD----NDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSH 438

Query: 367 HIELPK-PPPGPKMPDGTRGFTMGRGRPPTS 386
               PK    GP+MPDGTRGFTMGRG+P  S
Sbjct: 439 ESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

[Close]

BLAST of Carg15013 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-43
Identity = 122/357 (34.17%), Postives = 192/357 (53.78%), Query Frame = 0


Query: 68  LSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFKRMKKLTQDHSF 127
           L ED  Q+I+ QVEYYFS+ NL T  +++  I K+ EG+VP+ ++A+FK++K +  ++S 
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248

Query: 128 IAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHSEENIQRIFGAA 187
           +AA L+ S+ L VS +GKKV+R+ PI      + +   I+ ENLPEDH  +N+ +IF   
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 308

Query: 188 GRIKSITICDPH--------VVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVATLND 247
           G +K+I  C P             + KS   G L SNK+HA VEYE +E +E+AV  L++
Sbjct: 309 GSVKNIRTCQPQNNGSGAPPAARSAAKSD--GTLFSNKVHAFVEYEIVELAERAVTELSE 368

Query: 248 ERDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQNVDE 307
             +WR+G++V   + ++KH Q K+  +     + G     +H   D  ++ +   +   +
Sbjct: 369 AGNWRSGLKV---RLMLKH-QTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSD 428

Query: 308 EIQNITEHH--EDMPDEEEGDHQ--HKDKHRHRGRNQGRTRRQKYKGVNA---------- 367
           +     + H  E    E++G+ +   + K R+RGR +GR R Q ++  N           
Sbjct: 429 DCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNH 488

Query: 368 --MGHGTTTSAHH--------------IELP----KPPPGPKMPDGTRGFTMGRGRP 383
              G G     HH              +E P    + PPGP+MPDGTRGF+MGRG+P
Sbjct: 489 NHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKP 539

The following BLAST results are available for this feature:

BLAST of Carg15013 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026470.1	4.4e-219	100.00	La-related protein 6A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6594473.1	1.3e-218	99.74	La-related protein 6A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022926363.1	4.5e-216	98.71	la-related protein 6A isoform X2 [Cucurbita moschata]	[more]
XP_022926362.1	3.2e-214	97.46	la-related protein 6A isoform X1 [Cucurbita moschata]	[more]
XP_023002907.1	1.2e-211	96.40	la-related protein 6A isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg15013 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94A38	1.2e-91	50.26	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q9LHL3	1.1e-44	38.07	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
O80567	3.1e-42	34.17	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q5XI01	3.7e-19	35.37	La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2	[more]
Q7ZWE3	6.3e-19	35.09	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1	[more]

BLAST of Carg15013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHU6	2.2e-216	98.71	la-related protein 6A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433532 P...	[more]
A0A6J1EEB2	1.6e-214	97.46	la-related protein 6A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433532 P...	[more]
A0A6J1KKW8	5.6e-212	96.40	la-related protein 6A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=...	[more]
A0A6J1KMM2	4.0e-210	95.18	la-related protein 6A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=...	[more]
A0A6J1IUP2	3.0e-173	81.87	la-related protein 6A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11147873...	[more]

BLAST of Carg15013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46250.1	8.8e-93	50.26	RNA-binding protein	[more]
AT5G46250.2	4.3e-71	49.67	RNA-binding protein	[more]
AT5G46250.3	4.3e-71	49.67	RNA-binding protein	[more]
AT3G19090.1	8.1e-46	38.07	RNA-binding protein	[more]
AT2G43970.1	2.2e-43	34.17	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 105..120 score: 40.91 coord: 79..96 score: 55.56 coord: 136..149 score: 27.92
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 165..252 e-value: 0.0047 score: 26.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 166..239 e-value: 3.8E-7 score: 29.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 164..250 score: 9.967915
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 70..150 e-value: 9.8E-41 score: 151.3
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 76..134 e-value: 9.7E-25 score: 86.4
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 66..157 score: 27.650803
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 64..154 e-value: 1.1E-31 score: 110.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 156..260 e-value: 1.2E-10 score: 43.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..299
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..389
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 20..384
None	No IPR available	PANTHER	PTHR22792:SF102	LA-RELATED PROTEIN 6A	coord: 20..384
IPR034878	Plant La-related protein, RNA recognition motif	CDD	cd12288	RRM_La_like_plant	coord: 164..250 e-value: 1.52393E-39 score: 134.182
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 66..159
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 153..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15013-RA	Carg15013-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005844	polysome
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding