Carg14998 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14998
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 548385 .. 550978 (+)
RNA-Seq ExpressionCarg14998
SyntenyCarg14998
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTTACCCCGTATATAGGTTATTTGAAATCCATAGAGGTGATTCGTGTGGATAGGTGTTAAATGCTTTGGTTTCTAGAGCTATTTAATTTTGATTTTTATATTTTTAAATGCTCTTTTGGTCCCTAGATTTTCATAAATGTCTTTTACTTTTTGTATTGCATCATTATAAATCTTTTATCTCATATGTTAAACATAACAACATTAACCGGAAGTCTTTAGCACTTCAAAAGATAAAAATTAAAGAATACACATGAATTTTGTAATGTATACACTTTCTTTTATTCAAGAACTATTTAAGAATAGCTTTTAAATTATGTATTCAAATTTTATGAAAGTTCAGAAAATTTGTAAGACTGATTGAAACTTGCACTGTGAGTGTAAAATAAAACTTTACAGCTTCACAAAATTGATGCTGCAATGCCTGTGGTTTCATGTAAAAGGTGTAATTTGCAAATGTCGAGTTATTTGTAGTAATATCTACTCTTTTGAGTTTGCTCATGATTCAAAGATTATTCTATTTTCTCTTATCTGTAACCTCTTCAAGAATGGCTGCATTAAAAATAAGTTCCACTTACAAAACACCAACTTGGCCATTTTAGTAAAAATAAACCTCACCCTAGGGAGGATGAGAAACTTTAGCCCTGTATATGCTAAATTTAGTAAACTCTAACCCCATACCTACAGCTTAGGCACAAGATTTCTTCTTTACTATTTTTAAGTTCCACTATTCTTAGTCCACTTTGACCTTTTCAGCTTGAGTAAACCAACATTCTTCTCCTAAAGCTTGAAAACGTCTAAGATATCTGTTACATTTGTGTTGGACCTAATTAGAAGAATTGTCATTATTATATCTAATTTTTCATTTTAGAGACTACTTGAAGTGGTTACTTATATATCTTAACTTGTGTTGTAGACTTTTGTCAGTCCACTTTCTGATTGAACTTTACAAGAGCTCCCATTTCCTATGAGAAAAAACATGTTCATTTACGATAATGAAAATAATGTTTGAATGTTAGGAATATGAAAGCGCAAGAAGGAAGACTAGAAGCTGAGGCAGGTTCTGCTATTTGGTTGCACCACGGGATAGGTTTCAGTTTAAAACGTAAGTATTTGGTGTCTGGAGAACTCTTTGCCAGATTTTGAATGTAATTTCCCTTATTGTTTCACGTCTGGTGTTGAAATCTTTGCTAGCTTTGTTTTGATAGCTGTTATTTGCGGTGTTTTGAGCACTTGAATTTTCCTTAAATTTCTCCCCTTGATTTGCGGGTTGTTTTGTATTGGTTTCTTATTGAATAAAATCCCATCGTCTAAACAAATTAATTCAGAGAAAAACCTGTTTTTTTTTTTTTTTTTCCTTTCTCTTTTCTGGATTAATCTGTGTTTTCCCCTGATTAAATAGAAGATTATTTAGTTAGATGGGATTAAAGGACTCCAAATACGAATAACTTGAATTCCTTGACTGAAAGTACAACTACCTCATGGATGAAAGTAAACAGAATCGGCCATTGTTAATCAACTCGCTTGATTATGTTGTAAGCTGATTTCTGAGTGCTTTTAGCATGCATATACTTCAATTACGAACACTTTGATGAAGAGTGCATCACTTTGATATTTGACTCTACCCATTAAAAAGTGATTTATTGTGCTAGTTTTCAGCTCATCAGTACTCTGAACATTAGTACTTTACAAATGTTCTCTCACATGGCATTAATATGCATTGAGCTTTATTTTGGGAACTTTTAATGTGATCCCAAGAATGATAAGTATAGGTCTGTTTTTATTATTTAGCAATGTTCACGTCTGGCTTAGTGATGGTGATAGCTAGCTTTCATTGAACTAACCATGTGTTGGCCAAGCAATCGCCAAAACATCCAATTGTCTTTTTGCAGGCACACGGTTTTTATCAATAGTAATCAATAATCAATTCTAATTCCATGTGATCAACAGTTAAGAAGCAGAATCCACGGACAGCTAATTTGCTGTCAGACCAATAATGATGGGTTATTATGAACTTAATTATTCCACATGTTTGCCCACAAAATGGTCCAGCAAACAATGACAGGCAGTGATTATAGGGGACATTAGGAGCTCCTGCCCCCCAAATCTCCCTTTCGAAACCCTCATTATTTTAATCGTCAGTAGTATTTGATAGCTTCTTTCAATCCATAACGAACAAAGTGCAAGTCACTATCACTCTGCAATAAATCAGTCCTAAACGCGCAGTGGACAAAGACTCTACAGTACTCTAAAACCTTTTCACATCATCAGAGGAGATTGTTTTTCAAAACATACATCATGCTCCATTGTCCACTCCACACTTGTTCAGTGTTCATCGTTTCTTCTTGGCTAAACTATAAAAAAATGTACCTAAACTTTGTCCTTCATTTGAAAACTTTCAAATTACCTTCTATTCGCTCAACATTCTAATAATTGTTTGAAATTTTTTTGAAACACTTGTAAAATGTCAAGTATCAAATATTGACGTTTGAAAGTAAAACAGACTAAAGGATAGGGAAGAGGGCGAGGGGGGGCCATCAACCGAGCCAGCTATTACAGATGAAAAGGATAGGGAAGAGGAAGGAGCGTGA

mRNA sequence

ATGGCGTTTACCCCGTATATAGGTTATTTGAAATCCATAGAGGTGATTCGTGTGGATAGGAATATGAAAGCGCAAGAAGGAAGACTAGAAGCTGAGGCAGGTTCTGCTATTTGGTTGCACCACGGGATAGGTTTCAGTTTAAAACGTAAACTAAAGGATAGGGAAGAGGGCGAGGGGGGGCCATCAACCGAGCCAGCTATTACAGATGAAAAGGATAGGGAAGAGGAAGGAGCGTGA

Coding sequence (CDS)

ATGGCGTTTACCCCGTATATAGGTTATTTGAAATCCATAGAGGTGATTCGTGTGGATAGGAATATGAAAGCGCAAGAAGGAAGACTAGAAGCTGAGGCAGGTTCTGCTATTTGGTTGCACCACGGGATAGGTTTCAGTTTAAAACGTAAACTAAAGGATAGGGAAGAGGGCGAGGGGGGGCCATCAACCGAGCCAGCTATTACAGATGAAAAGGATAGGGAAGAGGAAGGAGCGTGA

Protein sequence

MAFTPYIGYLKSIEVIRVDRNMKAQEGRLEAEAGSAIWLHHGIGFSLKRKLKDREEGEGGPSTEPAITDEKDREEEGA
Homology
[Close]
BLAST of Carg14998 vs. NCBI nr
Match: KAG7026455.1 (hypothetical protein SDJN02_10455, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MAFTPYIGYLKSIEVIRVDRNMKAQEGRLEAEAGSAIWLHHGIGFSLKRKLKDREEGEGG 60
          MAFTPYIGYLKSIEVIRVDRNMKAQEGRLEAEAGSAIWLHHGIGFSLKRKLKDREEGEGG
Sbjct: 1  MAFTPYIGYLKSIEVIRVDRNMKAQEGRLEAEAGSAIWLHHGIGFSLKRKLKDREEGEGG 60

Query: 61 PSTEPAITDEKDREEEGA 79
          PSTEPAITDEKDREEEGA
Sbjct: 61 PSTEPAITDEKDREEEGA 78

[Close]
BLAST of Carg14998 vs. NCBI nr
Match: KAG6594456.1 (Transcription factor TCP2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 21  NMKAQEGRLEAEAGSAIWLHHGIGFSLKRK 51
           NMKAQEGRLEAEAGSAIWLHHGIGFSLKRK
Sbjct: 447 NMKAQEGRLEAEAGSAIWLHHGIGFSLKRK 476

The following BLAST results are available for this feature:
BLAST of Carg14998 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026455.14.6e-35100.00hypothetical protein SDJN02_10455, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6594456.11.4e-07100.00Transcription factor TCP2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg14998 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14998 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14998 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14998-RACarg14998-RAmRNA