Carg14937 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14937
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 164162 .. 164542 (-)
RNA-Seq Expression	Carg14937
Synteny	Carg14937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAAATGTGGCTTCTCTGGTGGCCGAAGAACTCCTCTGCCGCCGCCAAAACTAGCACATCCTCTGCCACCGCCGCCGTAACTGCGACTTCGCTCGCCACAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGAGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCTCCTGATGGAACAGTCACTGCTTCTCGCTAG

mRNA sequence

ATGGCGCAAATGTGGCTTCTCTGGTGGCCGAAGAACTCCTCTGCCGCCGCCAAAACTAGCACATCCTCTGCCACCGCCGCCGTAACTGCGACTTCGCTCGCCACAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGAGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCTCCTGATGGAACAGTCACTGCTTCTCGCTAG

Coding sequence (CDS)

ATGGCGCAAATGTGGCTTCTCTGGTGGCCGAAGAACTCCTCTGCCGCCGCCAAAACTAGCACATCCTCTGCCACCGCCGCCGTAACTGCGACTTCGCTCGCCACAAAGGTATCCTCCTCGCACTGCAACCGCATCGCCAAACTGTTGCGCAAACTGAAGAAACGCGGCAGAGTACTCTGTAGCACAACTGGAGAGAGCAGCAGCAACTTCCAATGCCGCTACGATCCTTTGAGCTACTCTCTCAACTTCGACACCAGCGGGTGCGGAAGCTTGTTAGATGAGCACTACTATCAGTTCTGCGCTTTCTCCTCGAGATTCGCGTCCAATCCAGGAACTGTTTCTCGTCCTGCTCCTGATGGAACAGTCACTGCTTCTCGCTAG

Protein sequence

MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTVTASR

Homology

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BLAST of Carg14937 vs. NCBI nr
Match: KAG7026395.1 (hypothetical protein SDJN02_10395, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 5.4e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60
           MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120
           STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120

Query: 121 TVTASR 127
           TVTASR
Sbjct: 121 TVTASR 126

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BLAST of Carg14937 vs. NCBI nr
Match: XP_023518962.1 (uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60
           MAQMWLLWWPKNSSAAAKTSTSSAT AVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATGAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120
           STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120

Query: 121 TVTASR 127
           TVTASR
Sbjct: 121 TVTASR 126

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BLAST of Carg14937 vs. NCBI nr
Match: XP_022926526.1 (uncharacterized protein LOC111433647 [Cucurbita moschata])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60
           MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120
           STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFC FSSRFASNPGTVSRPAPDG
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVSRPAPDG 120

Query: 121 TVTASR 127
           TVTASR
Sbjct: 121 TVTASR 126

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BLAST of Carg14937 vs. NCBI nr
Match: KAG6594391.1 (hypothetical protein SDJN03_10944, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.3 bits (617), Expect = 2.3e-60
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 4   MWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTT 63
           MWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTT
Sbjct: 1   MWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCSTT 60

Query: 64  GESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTVT 123
           GESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTVT
Sbjct: 61  GESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTVT 120

Query: 124 ASR 127
           ASR
Sbjct: 121 ASR 123

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BLAST of Carg14937 vs. NCBI nr
Match: XP_023003625.1 (uncharacterized protein LOC111497167 [Cucurbita maxima])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60
           MAQMWLLWWPKNSSAAAK+ST SAT AV+ATSLA+KVSSSHCNRIAKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120
           STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120

Query: 121 TVTASR 127
           TVTASR
Sbjct: 121 TVTASR 126

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BLAST of Carg14937 vs. ExPASy TrEMBL
Match: A0A6J1EF60 (uncharacterized protein LOC111433647 OS=Cucurbita moschata OX=3662 GN=LOC111433647 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.7e-62
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60
           MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120
           STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFC FSSRFASNPGTVSRPAPDG
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVSRPAPDG 120

Query: 121 TVTASR 127
           TVTASR
Sbjct: 121 TVTASR 126

[Close]

BLAST of Carg14937 vs. ExPASy TrEMBL
Match: A0A6J1KS95 (uncharacterized protein LOC111497167 OS=Cucurbita maxima OX=3661 GN=LOC111497167 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.2e-60
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLC 60
           MAQMWLLWWPKNSSAAAK+ST SAT AV+ATSLA+KVSSSHCNRIAKLLRKLKKRGRVLC
Sbjct: 1   MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKVSSSHCNRIAKLLRKLKKRGRVLC 60

Query: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120
           STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG
Sbjct: 61  STTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDG 120

Query: 121 TVTASR 127
           TVTASR
Sbjct: 121 TVTASR 126

[Close]

BLAST of Carg14937 vs. ExPASy TrEMBL
Match: A0A6J1CYQ9 (uncharacterized protein LOC111015812 OS=Momordica charantia OX=3673 GN=LOC111015812 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 106/127 (83.46%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKVS-SSHCNRIAKLLRKLKKRGRVL 60
           M QMWLLWWPK  SA  KT+TSSATAAVTATSLA K S SSHCN +AKLLRKLKKRGRVL
Sbjct: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASPSSHCNCVAKLLRKLKKRGRVL 60

Query: 61  CSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPD 120
           CST+GESS+ FQCRYDPLSYSLNFDTSGCGSLLDE YYQFCAFSSRFASNPG  S   PD
Sbjct: 61  CSTSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPD 120

Query: 121 GTVTASR 127
            TVTASR
Sbjct: 121 VTVTASR 126

[Close]

BLAST of Carg14937 vs. ExPASy TrEMBL
Match: A0A6J1EFV9 (uncharacterized protein LOC111433012 OS=Cucurbita moschata OX=3662 GN=LOC111433012 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.6e-43
Identity = 101/124 (81.45%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 4   MWLLWWPK-NSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCST 63
           MWLLWWPK N+SA AKT TSS  AAVTATSLA K SSS+CN  AKLLRKLKKR RVL ST
Sbjct: 1   MWLLWWPKNNASADAKTCTSS--AAVTATSLARKASSSNCNCFAKLLRKLKKRSRVLRST 60

Query: 64  TGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTV 123
            GESSS FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CAFSSRFASNPG VS  AP  TV
Sbjct: 61  AGESSSTFQCRYDPLSYSLNFDTSGCGGLLDEHYYQYCAFSSRFASNPGNVSHSAPVATV 120

Query: 124 TASR 127
           T SR
Sbjct: 121 TTSR 122

[Close]

BLAST of Carg14937 vs. ExPASy TrEMBL
Match: A0A6J1IQV7 (uncharacterized protein LOC111477613 OS=Cucurbita maxima OX=3661 GN=LOC111477613 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.8e-42
Identity = 99/124 (79.84%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 4   MWLLWWPK-NSSAAAKTSTSSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVLCST 63
           MWLLWWPK N+S+ AKT TSS  AAVTATSLA K SSS+ N  AKLLRKLKKR RVL ST
Sbjct: 1   MWLLWWPKNNASSGAKTCTSS--AAVTATSLARKASSSNYNCFAKLLRKLKKRSRVLRST 60

Query: 64  TGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGTV 123
            GESSS FQCRYDPLSYSLNFDTSGCG LLDEHYYQ+CAFSSRFASNPG VS  AP  TV
Sbjct: 61  AGESSSTFQCRYDPLSYSLNFDTSGCGGLLDEHYYQYCAFSSRFASNPGNVSHSAPVVTV 120

Query: 124 TASR 127
           T SR
Sbjct: 121 TTSR 122

[Close]

BLAST of Carg14937 vs. TAIR 10
Match: AT4G19980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-14
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 22  SSATAAVTATSLATKVSSSHCNRIAKLLRKLKKRGRVL--CSTTGESSSNFQCRYDPLSY 81
           ++ATA    +++ T   +     +A+L+RKLKK+GR+L   ST     S+ QCRYDP+SY
Sbjct: 13  TTATAVTKKSNVPTPTPNCCVTCLARLIRKLKKKGRLLLATSTARRQGSSLQCRYDPMSY 72

Query: 82  SLNFDTSGCGSLLD--EHYYQFCAFSSRFASNPGTVSRPAP 119
           SLNFD   CG+L D  ++Y +F AFSSR+ +    + +  P
Sbjct: 73  SLNFDGGACGTLPDDEDYYLRFYAFSSRYVTTTNNIRKRPP 113

The following BLAST results are available for this feature:

BLAST of Carg14937 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026395.1	5.4e-62	100.00	hypothetical protein SDJN02_10395, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023518962.1	1.6e-61	99.21	uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo]	[more]
XP_022926526.1	1.6e-61	99.21	uncharacterized protein LOC111433647 [Cucurbita moschata]	[more]
KAG6594391.1	2.3e-60	100.00	hypothetical protein SDJN03_10944, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003625.1	1.5e-59	96.03	uncharacterized protein LOC111497167 [Cucurbita maxima]	[more]

BLAST of Carg14937 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EF60	7.7e-62	99.21	uncharacterized protein LOC111433647 OS=Cucurbita moschata OX=3662 GN=LOC1114336...	[more]
A0A6J1KS95	7.2e-60	96.03	uncharacterized protein LOC111497167 OS=Cucurbita maxima OX=3661 GN=LOC111497167...	[more]
A0A6J1CYQ9	1.4e-47	83.46	uncharacterized protein LOC111015812 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1EFV9	1.6e-43	81.45	uncharacterized protein LOC111433012 OS=Cucurbita moschata OX=3662 GN=LOC1114330...	[more]
A0A6J1IQV7	8.8e-42	79.84	uncharacterized protein LOC111477613 OS=Cucurbita maxima OX=3661 GN=LOC111477613...	[more]

BLAST of Carg14937 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19980.1	5.9e-14	41.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 1..110
None	No IPR available	PANTHER	PTHR33168:SF42	EXPRESSED PROTEIN	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14937-RA	Carg14937-RA	mRNA