Carg14935 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14935
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 148139 .. 148450 (+)
RNA-Seq Expression	Carg14935
Synteny	Carg14935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGGAGATACAAAGAGGCTATGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAAGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAATCCACAATCACAATGTCAATCTCTCTCTCTTCTGCCATGTCAGAGTGTAA

mRNA sequence

ATGGAGGCGGAGATACAAAGAGGCTATGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAAGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAATCCACAATCACAATGTCAATCTCTCTCTCTTCTGCCATGTCAGAGTGTAA

Coding sequence (CDS)

ATGGAGGCGGAGATACAAAGAGGCTATGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTCTCAGTGTTTCTCTGTGTTGTTGGGGAAAGAGAAGGGCTGAACCGAGGAAAAAGGAAAGTGCGCAACCTGAAGGCTGAAGCGAAGTGCGTAAAGGCTCTATGGATGGCACGTGGCGAGAATCCAGTGGTTTGGGTTCCTTGGAAGCTTCAACAGCAACAACCCAAAACCCAACGCCAACATATGCACAAAACAATCCACAATCACAATGTCAATCTCTCTCTCTTCTGCCATGTCAGAGTGTAA

Protein sequence

MEAEIQRGYDSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMARGENPVVWVPWKLQQQQPKTQRQHMHKTIHNHNVNLSLFCHVRV

Homology

[Close]

BLAST of Carg14935 vs. NCBI nr
Match: KAG7026393.1 (hypothetical protein SDJN02_10393, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 3.9e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MEAEIQRGYDSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMAR 60
           MEAEIQRGYDSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMAR
Sbjct: 1   MEAEIQRGYDSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMAR 60

Query: 61  GENPVVWVPWKLQQQQPKTQRQHMHKTIHNHNVNLSLFCHVRV 104
           GENPVVWVPWKLQQQQPKTQRQHMHKTIHNHNVNLSLFCHVRV
Sbjct: 61  GENPVVWVPWKLQQQQPKTQRQHMHKTIHNHNVNLSLFCHVRV 103

[Close]

BLAST of Carg14935 vs. NCBI nr
Match: KAG6594389.1 (hypothetical protein SDJN03_10942, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MEAEIQRGYDSSSSSSSSSSSIFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMAR 60
           MEAEIQRGYD     SSSSSS+FSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMAR
Sbjct: 20  MEAEIQRGYD-----SSSSSSMFSVFLCVVGEREGLNRGKRKVRNLKAEAKCVKALWMAR 79

Query: 61  GENPVVWVPWKLQQQQPKTQRQHMHKTIHNHNVNLSLFCHVRV 104
           GENPVVWVPWKLQQQQPKTQRQHMHKT HNHNVNLSLFCHVRV
Sbjct: 80  GENPVVWVPWKLQQQQPKTQRQHMHKTTHNHNVNLSLFCHVRV 117

The following BLAST results are available for this feature:

BLAST of Carg14935 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026393.1	3.9e-50	100.00	hypothetical protein SDJN02_10393, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594389.1	1.3e-45	93.20	hypothetical protein SDJN03_10942, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg14935 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14935 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14935 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14935-RA	Carg14935-RA	mRNA