Carg14925 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14925
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cytochrome c6, chloroplastic
Location	Carg_Chr07: 89026 .. 91795 (+)
RNA-Seq Expression	Carg14925
Synteny	Carg14925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGTGAAACTCTTCCTTTCAATTTGCTACACGATATAAACGCATGATAGCAGCATGATCAAATTTTCCCAGAATCAGGTGTAGGGTGACTGTCTGGAAGTTGCTAAATCGTCGCTAATCTCACATTTGGGGTTAATTTATGAATTTGTGTCTTTTTTTTTTTTTTTTTGAGAAAGCATTTTTCATGGATTATCACATCAAACAGATGGTTACCATTTAACGAAAGTCGACTTGTGTATTCAATTAATATTTGGAAGTGTGTGAGAGAAATATCCGCTTCTGTCCCCACATTCTGTTTCCTAGTGTTACCGTCTTCCTTCATTCCATGTCAAAAGTTATTCATACGCTCATTAAGCTAAAGTCAGTCCACATTACTATGTAAATTAGGAAACAAATACAAATATTACAAACTTCCATAAAAATATGCAAAATCATGAGCAACTTGTTTCCTTTGCGGTTTCTGCTGCCCTTTTTGTTTCTTGTTCGTTGTTATTATCTTTAAAAGAAATGTGCATTTCGTGGTTTCTTTTTTCCTTTTTCAAGAAACGATTTCGACATTACACATAGTTTTCCCTAAACAAAAATGTTTACACAATCGATCTTTTATTTCTTACCCCTGTCACGTCAATTTCTTTCTTTCTTTTTCTTTTTCAAGCGAAGTTTTTCGTTTGAAATTTGGAAGCCGAAAAACCCAAATTTGAAACGACATCCAATAGACCCTCAATATACTTCTTTCTCTTAACGCATATCAAAGGATCTTTTTGACGTGCAATTGTTTATACTTTTTTCTGACTTGGCTGGCATCCATGTAATGTGTAAGAAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGTTAGTGTTCCTATCTATAACACTACTGTTTAAATATTGATAAGCATCTGAGATCTGCTTTAATATGTTGGATTTTGAATTTTTATTAACGGTTATGTGGTTTCAATTTTTTTTCTTTTGCTATTCTTTCTGTGTGCTACATTTCTGCTGTTTCTGCAACCGACCTTTTGTCTTCTTCTCTCGTAGGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGGTAATTTTCTAGAACCTTGAGAAAAAATGAAGTTTAATAACAGTATATGATTTCGGCCCAATGTGCATGCAACATTGCGTACTAGTATCATGAGGTATTAGGACGCGGATCTACTTTCTCTTCTCTTCTAATTATGTGTTCTATTTAAAATAATCATTTTTTTTTTAAATTTTTTTTTATTTTGTACAAGTGACTATAGTTTAGATTGGTTATGGATGAGGAAGATGGTAGATTCACGATTAAGGGCAATAGCTCTTTTGTTGTATGGACTTTTTGGTAGGGTCCAAAAGATCTACATGGTCTTAGACTCTTAGCTCAAAATGGGAAAAATCAGCAAATATGCCAAGAACTGATTTTTTTTTCACCTGTCTTCAATTGTACAAGGGAAACTCGCTTGACTACATTTTTATTTTCCATTTTTCTTAAATATAGTATACAATTTAAACACCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAGATCAACTTCTGCTTCTAAAATATATTGGGGGAAGGGTACGGGGTGGTGAACATCCAATCAACCCTGAAGGAAATCTGAAGATTGAATTGGTGCGTTCCTATCAGTAAATTTTTTAAGGGAAATATACAAAACTCATTGCAACAGAGGACGTCATAAACGAGACAACAATATGTATTCTACTGGACAAGCACCCTATAACACCCTGCTTGTGTTAAAAAAAGAAAAAAAGAAAAAAAACTATTTTACAAAGAGTCTGTATATAATAAAATTCTCGAAATTTCTCCATATCCAGCAATGCAGAAATCGCTTTACCAATTGTGTTTATGAGGTGATTGAACCAAGTCGAACGATAGTGAATGGTTGTTGTCTTGAAACCATAGGCTTGAGCTATTAGTTCTATAACCCTTTGCTCTGTTTCATTGTTCCTTTTTATAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGTAAGTGATTATTTGTTAATATTATGACTGTAACCAATATGGCTCTATTAGTTCAACGATTGGTGATGGGTTTCAGGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCCAAACCCATAGATGCCGATTGATTTTTGCGCCAGAATATTATGCATTGGTTACCAGTTTATAATTTATATTAACATTGTATATAATTCTCCCAAATCCCTCTCTGAATCCATGGCCTTAGGCATGGATCATGTCATCTGGAGAACTAGAATGGATTGCTGCGATTACTCTTGTGATAAATGGCAATGTTTAAACACTGTAAGCCTGCCGTCTGTTTCTGAAACTTGATATCCACACTTTGCTATTGCACAAGAAATGATCATAAAACAAACGACTCACTAAAATGCTCCAATTTCAAAGTTTTGAATTACATGAATGTATCTGCCAATGGAACAATGAAAAGTATACCGATGCATTTGT

mRNA sequence

ATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCCAAACCCATAGATGCCGATTGATTTTTGCGCCAGAATATTATGCATTGGTTACCAGTTTATAATTTATATTAACATTGTATATAATTCTCCCAAATCCCTCTCTGAATCCATGGCCTTAGGCATGGATCATGTCATCTGGAGAACTAGAATGGATTGCTGCGATTACTCTTGTGATAAATGGCAATGTTTAAACACTGTAAGCCTGCCGTCTGTTTCTGAAACTTGATATCCACACTTTGCTATTGCACAAGAAATGATCATAAAACAAACGACTCACTAAAATGCTCCAATTTCAAAGTTTTGAATTACATGAATGTATCTGCCAATGGAACAATGAAAAGTATACCGATGCATTTGT

Coding sequence (CDS)

ATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCCAAACCCATAG

Protein sequence

MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

Homology

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BLAST of Carg14925 vs. NCBI nr
Match: XP_022926876.1 (cytochrome c6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 6.7e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN
Sbjct: 30  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 89

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 90  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 149

Query: 121 VLAKFVKIQADRGWPNP 138
           VLAKFVKIQADRGWPNP
Sbjct: 150 VLAKFVKIQADRGWPNP 166

[Close]

BLAST of Carg14925 vs. NCBI nr
Match: KAG7026384.1 (Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.3 bits (734), Expect = 6.7e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN
Sbjct: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120

Query: 121 VLAKFVKIQADRGWPNP 138
           VLAKFVKIQADRGWPNP
Sbjct: 121 VLAKFVKIQADRGWPNP 137

[Close]

BLAST of Carg14925 vs. NCBI nr
Match: XP_023517564.1 (cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 3.3e-73
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           MRRQV ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN
Sbjct: 30  MRRQVTILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 89

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 90  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 149

Query: 121 VLAKFVKIQADRGWPNP 138
           VLAKFVKIQADRGWPNP
Sbjct: 150 VLAKFVKIQADRGWPNP 166

[Close]

BLAST of Carg14925 vs. NCBI nr
Match: XP_023003546.1 (cytochrome c6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           MRRQVK LK LAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHD GGN
Sbjct: 30  MRRQVKFLKALAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDGGGN 89

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 90  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 149

Query: 121 VLAKFVKIQADRGWPNP 138
           VLAKFVKIQADRGWPNP
Sbjct: 150 VLAKFVKIQADRGWPNP 166

[Close]

BLAST of Carg14925 vs. NCBI nr
Match: KAG6594380.1 (Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTP-GCYALAQSAEIERGGALFSHACIGCHDAGG 60
           MRRQVKILKTLAPPLIAVLIALYPLNKTP GCYALAQSAEIERGGALFSHACIGCHDAGG
Sbjct: 30  MRRQVKILKTLAPPLIAVLIALYPLNKTPEGCYALAQSAEIERGGALFSHACIGCHDAGG 89

Query: 61  NIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEI 120
           NIIQPGATLFSSDLERN ADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEI
Sbjct: 90  NIIQPGATLFSSDLERNRADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEI 149

Query: 121 RVLAKFVKIQADRGWPNP 138
           RVLAKFVKIQADRGW NP
Sbjct: 150 RVLAKFVKIQADRGWLNP 167

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BLAST of Carg14925 vs. ExPASy Swiss-Prot
Match: Q93VA3 (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.2e-50
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 7   ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGA 66
           +LK LAPPL AVL+A+ P+   P   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPP--ESLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 67  TLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFV 126
           TLF+ DLERNG D+EEEIY++TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI++LA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 127 KIQADRGWP 136
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

[Close]

BLAST of Carg14925 vs. ExPASy Swiss-Prot
Match: P25935 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=petJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 41/129 (31.78%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 6   KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPG 65
           +IL T    L+ +L  + P          AQ+A++  GG +FS  C  CH  G N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 66  ATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKF 125
            TL  +DL++ G  S E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 126 VKIQADRGW 135
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of Carg14925 vs. ExPASy Swiss-Prot
Match: P07497 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petJ PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 41/129 (31.78%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 6   KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPG 65
           +IL T    L+ +L  + P          AQ+A++  GG +FS  C  CH  G N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 66  ATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKF 125
            TL  +DL++ G  S E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 126 VKIQADRGW 135
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of Carg14925 vs. ExPASy Swiss-Prot
Match: P00110 (Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 36/98 (36.73%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 38  AEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEI-YQITYYGKGRMP 97
           A+IE G  +F+  C  CH  G N+I P  TL    LE NG ++   I YQ+T  GK  MP
Sbjct: 1   ADIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVT-NGKNAMP 60

Query: 98  GFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW 135
                        FG RL + +I  +A +V  Q+++GW
Sbjct: 61  ------------AFGGRLSDSDIEDVANYVLSQSEQGW 85

[Close]

BLAST of Carg14925 vs. ExPASy Swiss-Prot
Match: P46445 (Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=petJ PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 41/129 (31.78%), Postives = 63/129 (48.84%), Query Frame = 0


Query: 6   KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPG 65
           +I   +A P +  L  ++ L  T      A +A++  G A+F+  C  CH+ G N I P 
Sbjct: 10  RIFFGIALPCLIFLGGIFSLGNT------ALAADLAHGKAIFAGNCAACHNGGLNAINPS 69

Query: 66  ATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKF 125
            TL  +DLE NG +S   I      G G MPGF      +G      R+ + ++  +A +
Sbjct: 70  KTLKMADLEANGKNSVAAIVAQITNGNGAMPGF------KG------RISDSDMEDVAAY 120

Query: 126 VKIQADRGW 135
           V  QA++GW
Sbjct: 130 VLDQAEKGW 120

[Close]

BLAST of Carg14925 vs. ExPASy TrEMBL
Match: A0A6J1EG38 (cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.3e-74
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN
Sbjct: 30  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 89

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 90  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 149

Query: 121 VLAKFVKIQADRGWPNP 138
           VLAKFVKIQADRGWPNP
Sbjct: 150 VLAKFVKIQADRGWPNP 166

[Close]

BLAST of Carg14925 vs. ExPASy TrEMBL
Match: A0A6J1KPJ4 (cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           MRRQVK LK LAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHD GGN
Sbjct: 30  MRRQVKFLKALAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDGGGN 89

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 90  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 149

Query: 121 VLAKFVKIQADRGWPNP 138
           VLAKFVKIQADRGWPNP
Sbjct: 150 VLAKFVKIQADRGWPNP 166

[Close]

BLAST of Carg14925 vs. ExPASy TrEMBL
Match: A0A1S3AYD3 (cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.3e-64
Identity = 118/137 (86.13%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           +R  VKIL+TLAPPLIA+L+ L PLNKTPGC  LA++ EIERGGALF+ ACIGCHD GGN
Sbjct: 33  IRTHVKILQTLAPPLIALLLPLSPLNKTPGCLVLAETTEIERGGALFNQACIGCHDGGGN 92

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 93  IIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 152

Query: 121 VLAKFVKIQADRGWPNP 138
           +LAKFVKIQADRGWPNP
Sbjct: 153 LLAKFVKIQADRGWPNP 169

[Close]

BLAST of Carg14925 vs. ExPASy TrEMBL
Match: A0A0A0KPD1 (Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G538600 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.3e-62
Identity = 115/137 (83.94%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 1   MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGN 60
           +R QVKILK L PPLIA+L+ L PLNKT GC  LA++ EIERGGALF+ +CIGCHD GGN
Sbjct: 18  IRTQVKILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQSCIGCHDGGGN 77

Query: 61  IIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 120
           IIQPGATLFSSDLERNGAD+EEEIY+ITY GKGRMPGFGENCKPRGQCTFGPRLQEEEIR
Sbjct: 78  IIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIR 137

Query: 121 VLAKFVKIQADRGWPNP 138
           +LAKFVKIQADRGWPNP
Sbjct: 138 LLAKFVKIQADRGWPNP 154

[Close]

BLAST of Carg14925 vs. ExPASy TrEMBL
Match: A0A6J1CXZ2 (cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 3   RQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNII 62
           +Q+KI K+ APPLIAVLIAL P+ KTPGC  LAQ+ EIERGGALFS +CIGCHD GGNII
Sbjct: 33  QQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNII 92

Query: 63  QPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVL 122
           QPGATLFSSDLERNGAD EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIR+L
Sbjct: 93  QPGATLFSSDLERNGADEEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLL 152

Query: 123 AKFVKIQADRGWPNP 138
           AKFVKIQADRGW NP
Sbjct: 153 AKFVKIQADRGWSNP 165

[Close]

BLAST of Carg14925 vs. TAIR 10
Match: AT5G45040.1 (Cytochrome c )

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-51
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 7   ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGA 66
           +LK LAPPL AVL+A+ P+   P   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPP--ESLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 67  TLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFV 126
           TLF+ DLERNG D+EEEIY++TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI++LA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 127 KIQADRGWP 136
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

The following BLAST results are available for this feature:

BLAST of Carg14925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926876.1	6.7e-74	100.00	cytochrome c6, chloroplastic [Cucurbita moschata]	[more]
KAG7026384.1	6.7e-74	100.00	Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023517564.1	3.3e-73	99.27	cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023003546.1	2.2e-72	97.81	cytochrome c6, chloroplastic [Cucurbita maxima]	[more]
KAG6594380.1	2.0e-70	97.83	Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg14925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VA3	9.2e-50	69.77	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1	[more]
P25935	1.4e-10	31.78	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 G...	[more]
P07497	1.4e-10	31.78	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
P00110	1.2e-09	36.73	Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1	[more]
P46445	1.2e-09	31.78	Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=petJ...	[more]

BLAST of Carg14925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG38	3.3e-74	100.00	cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 ...	[more]
A0A6J1KPJ4	1.1e-72	97.81	cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV...	[more]
A0A1S3AYD3	2.3e-64	86.13	cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1	[more]
A0A0A0KPD1	8.3e-62	83.94	Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G53860...	[more]
A0A6J1CXZ2	1.2e-60	85.19	cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3...	[more]

BLAST of Carg14925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45040.1	6.5e-51	69.77	Cytochrome c	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 36..137 e-value: 4.2E-39 score: 134.9
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 20..136
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 38..104 e-value: 8.2E-10 score: 38.9
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 38..130 score: 10.736038
IPR023655	Cytochrome c6	PANTHER	PTHR34688	CYTOCHROME C6, CHLOROPLASTIC	coord: 4..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14925-RA	Carg14925-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004506	squalene monooxygenase activity