Carg14845 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14845
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 13917901 .. 13920382 (+)
RNA-Seq ExpressionCarg14845
SyntenyCarg14845
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCACAAATGATGAACAGAGAGGCATTAGTTTTATTTCGAGTAAAACTGAAGTCTGCAACAGCTCCTGGACCTCTCTTTTCTGTGTCTGCTATGCTCAATCTTAAGAGGTATTTCATCCTTTATTTATTCTCGTATCCATTCTCTAAGCACCATAGTAGTTCTATATGCCTTTGTAGCCTCATCTTGCTCTTATATTTTCAGTATGTGGTATCATATGCACTGATTTTTCTATCAATATAAATGCAACGGTCCAAGTCCACCATCAACAGATATTGTCCTCTTTGGGTTTTCCCTTTGGGGCTTCCTCTCAAGGTTTTTGAAACGCGTCGGTTAGGAAGAGGTTTCCACACCCTTGTAAAGAATGTTCCGTTCTCCTCCCTAACTCATGTGGGATCTCACAATCCACCCCCTTCAGGACCCAGCGTCATTGCTAGCACTCATTCTCCAATCGATATGGGACTCCCAATCCACCCCCTTCGGGGCCCAACATCCTTGTTAGGACACACCACCTCATGTCCATCCCCTTCGGGGCTTAGCCTCCTTGTTGACACATCGCCCGGTATCTGGCTCTGATACCATTTATAACAGCTCAAACCCACTGCTAGCCGATATTGTCCTTTTTGGGCTTTTTCTTTTGAGGTTTCTCTCAAGTTTTTTAAAACTTGTCTACTAGGGAAAGGTTTTCACGTCCTTATTTCGTTCTCTTCCCCAATCGATATGGGATCTCTCAGTAAAACTCATCCATATTGGCTCGTTGGGGGGAGAGGAATGAAGAGGATATGGGTTGAGGATGTGATTTTGTGACCACACAAGAAAACAAATGGCTTGCGTGAGTTGTGTAAAGGATTGATTTGGATAATTGGATATGGTTCCTTTCATCTTTCAACTGAAAGAATTTGTTGTTATTTGAGGCAGCTTGTCTCAGCCCACCTCTTTTGTCCCAAAACAGCCAATTGTAAACATATGGCTGTGGTTGCTCTCTCATTTGGATATCCAACTACTTATCCATATTCAATGTTGTCAATGTGGTCGGATAGATTGAAATCAACGTTTATGCTTTAAGATATTCTGTATTTAAGCATATTCATATAAAGCATGTTCTCAGCATATTCTTTGTTATTAATTATTCTATCTACCTAAGTGCGGTTCAACTTATGGTATTTTACTGTCCAGTTTTTTGTTTCGGTAAAATAAGTGTGTGAATGTGAGAATTTAAACCTCCGATCTCAAGAAAGATGTAACAATATATGGCTACTACTGGTTGATATTGTCCGTTTTAGTCTATTATGTATTGTCGTCAGTCTCATGGTTTTAATACGTGTATGTTAAGGAGAGACTTACCCTCGTAAGAAATGCTTTGTTCCTTTGTTCTCCTTACCAGCCAACATGAGACCTCATAATCCACCCCACTTCTGGCGTCTGACTCTGATACCAGCCCAAATCCACTGGTTATAGATATTGTTTGCTTTAGCCTATTACGTATTTCTGTCAGTCTCACGGTTTAAAATGCATATGCTAGAAACAGGCTTCCTCACTCTTATAGAGAATGTTTCCTTCTCTTCTCCAACTAATATAAGATCTCACAAAAGATGTACGTGTCAGTTACCGATGAGTTATACTCATGTTGACTTTTGTTATACCGTTTAGATTTGAGCACTTGTTTTCCTTTCTCTCCTTCACTACCGTTGGTCGAGAAGAGGAAATGTAAAAAATGAGTTCATGGATATTATTTTGGAACTTCTGAATTTCATCTATTTATTTCAGTAATTTTTCCATAATAAAAGGGTAAAGTATGTAAGTGAAGTATGAATTTATAATTTTGAAGTGAATGTTACCATTTAACAGCCTAAGTGTTTGTCTGCATGGAATACTTAAATGATTAGCTTGACATATGTAAGAATTTACATAACTAATTGCACACATAATATAATTAATGGTTATATAAAAAAATGCTTACCTTAAAAATATATATTTTAGAAGTTCGTAATTATAATGAAATAATAATTACCAAAGAATTTAATTGAGGTACACTGTTTGCACACTTTCCCATGATTTTCATTTACGATGTGTCGACTGACCTTTTGTCCCATCAGAATACCTATCGGATTGACAGGTGAGCTGTCGTTCAGAAACCTTTTGTCCCACATCGATTTGTTTTCATTCAATATTACGCTTCATATAGCCAAGGGTACAACACAAGGTTCGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCACAAATCGAGAAATGGTCCAAATTTTTTTTCGCTTTTTACCCCTGAATCCGACTTTATTTTACCAATATACCCCTATGTTTTAACCGCTGTTCTTTTACGATTATATCCCTAATCAATAGCTTCCACTTCTTCAGCGAACAACAACTAACAGGACAGAAAGGTAAAATGATCGCGGAGTTGGTGAGAGAGAAGTAA

mRNA sequence

ATGAGGTCACAAATGATGAACAGAGAGGCATTAGTTTTATTTCGAGTAAAACTGAAGTCTGCAACAGCTCCTGGACCTCTCTTTTCTGTGTCTGCTATGCTCAATCTTAAGAGCTTCCACTTCTTCAGCGAACAACAACTAACAGGACAGAAAGGTAAAATGATCGCGGAGTTGGTGAGAGAGAAGTAA

Coding sequence (CDS)

ATGAGGTCACAAATGATGAACAGAGAGGCATTAGTTTTATTTCGAGTAAAACTGAAGTCTGCAACAGCTCCTGGACCTCTCTTTTCTGTGTCTGCTATGCTCAATCTTAAGAGCTTCCACTTCTTCAGCGAACAACAACTAACAGGACAGAAAGGTAAAATGATCGCGGAGTTGGTGAGAGAGAAGTAA

Protein sequence

MRSQMMNREALVLFRVKLKSATAPGPLFSVSAMLNLKSFHFFSEQQLTGQKGKMIAELVREK
Homology
[Close]
BLAST of Carg14845 vs. NCBI nr
Match: KAG7018936.1 (hypothetical protein SDJN02_20813, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRSQMMNREALVLFRVKLKSATAPGPLFSVSAMLNLKSFHFFSEQQLTGQKGKMIAELVR 60
          MRSQMMNREALVLFRVKLKSATAPGPLFSVSAMLNLKSFHFFSEQQLTGQKGKMIAELVR
Sbjct: 1  MRSQMMNREALVLFRVKLKSATAPGPLFSVSAMLNLKSFHFFSEQQLTGQKGKMIAELVR 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

The following BLAST results are available for this feature:
BLAST of Carg14845 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018936.11.1e-23100.00hypothetical protein SDJN02_20813, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg14845 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14845 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14845 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14845-RACarg14845-RAmRNA