Carg14772 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14772
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	Carg_Chr01: 10338734 .. 10339177 (+)
RNA-Seq Expression	Carg14772
Synteny	Carg14772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGGTATGATTACATTTACTTTGTTTTATTAGTTTTATCATATGAAATAGAATTTCTTCCTTTGTCCAATAATATAGTTTAGGGGAAGTGTATAGGTAAATGATATTCTCTCATAATTTACCTTTTTTCTTGTCATAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA

mRNA sequence

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA

Coding sequence (CDS)

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA

Protein sequence

MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFSMV

Homology

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: KAG7037480.1 (hypothetical protein SDJN02_01107, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFSMV 103
           MRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFSMV
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFSMV 102

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_022940121.1 (uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_022940122.1 (uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_023523877.1 (uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523879.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523880.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_022981117.1 (uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981118.1 uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981119.1 uncharacterized protein LOC111480361 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 8.7e-34
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. ExPASy TrEMBL
Match: A0A6J1FHK0 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111445840 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. ExPASy TrEMBL
Match: A0A6J1FIR1 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111445840 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. ExPASy TrEMBL
Match: A0A6J1J178 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111480361 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.2e-34
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. ExPASy TrEMBL
Match: A0A6J1FEP4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHS EKV DD AN+DS VS ELE SIS NGD++EEND+AN NL +SNALANGLSSML+NI
Sbjct: 1  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          +RDFDSKADDTLKSQSQLS SLDR+T++
Sbjct: 61 IRDFDSKADDTLKSQSQLSSSLDRITTE 88

[Close]

BLAST of Carg14772 vs. ExPASy TrEMBL
Match: A0A6J1F9C2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.6e-25
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHS EKV DD AN+DS VS ELE SIS NGD++EEND+AN NL +SNALANGLSSML+NI
Sbjct: 1  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTS 88
          +RDFDSKADDTLKSQSQLS SLDR+T+
Sbjct: 61 IRDFDSKADDTLKSQSQLSSSLDRITT 87

[Close]

BLAST of Carg14772 vs. TAIR 10
Match: AT1G79070.1 (SNARE-associated protein-related )

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 44 GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          G   A+A GLS+ML ++++DFDSKA DTL SQ +LS SLDRL  +
Sbjct: 32 GGGEAMARGLSAMLESVIKDFDSKALDTLNSQDELSGSLDRLVQE 76

The following BLAST results are available for this feature:

BLAST of Carg14772 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037480.1	5.4e-44	100.00	hypothetical protein SDJN02_01107, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940121.1	1.1e-36	98.86	uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata]	[more]
XP_022940122.1	1.1e-36	98.86	uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata]	[more]
XP_023523877.1	3.2e-36	97.73	uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523879....	[more]
XP_022981117.1	8.7e-34	93.18	uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981118.1 uncharac...	[more]

BLAST of Carg14772 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHK0	5.3e-37	98.86	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1FIR1	5.3e-37	98.86	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1J178	4.2e-34	93.18	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1FEP4	2.7e-25	77.27	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1F9C2	4.6e-25	78.16	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]

BLAST of Carg14772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79070.1	1.6e-06	57.78	SNARE-associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 9..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14772-RA	Carg14772-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex