Carg14742 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14742
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransmembrane protein
LocationCarg_Chr01: 10070453 .. 10073346 (+)
RNA-Seq ExpressionCarg14742
SyntenyCarg14742
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACGACGTTTTTATTTCCCCTAATTTTGCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATGTAAATTTCTTCGATTCACCTCTTTTTCTTCTCTGTTTTAAATTTTGATTGTTTCGATTTATTAATTGTTCTATTCGATTATGTTTTGTAGTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCGCAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAGGTTCGTTTGTTATTTTCAGAAATTTCGCTTGTATTACCAACAGGATATTGGATTTTTTTTTTCTTTCTATTTAGGACAATAATGTTGGATGGATGATAGATTTTTCTGTGATTATAATTATGCTGTGAGGTTTCTTCCTTCTCTACGAATCGGAGTTCTTCTCCCTTTCTATAGCAATAATGGAAGGGACAAACACTTCTGGAATGCAGCTTTATCAATTATCACCTTTAAGAAGAGAAAGTGTAATGACTACAATAATTGAGTGCAATTGTTTCCTGAAAATGAAAGGAGGGGCGAGGGGGCGGTGGAAATTCTTTCGAATTAAAGTTTCAGAATGGAAATGTCATTGATGACTTTGCGGAGAAAAAGAAAGAAAAAAAAAAGACAATGGAACTTCTTGGAGATTAGAATTGTGACGTCTGCCGGAACCAAAATAAGTTGGATAGAAGTTGTTCCTTCGGATTATGTAATGCCATATTCACTGCTGGTTTATGTATTGTGATTGATGCTGGATTCATCTGTTGTCTTTAAAATATACCATACATTTTGGCACCTTAGTTTGTGGGATTCTGGCCCTTATATAGAGTGGTTTGAGCTTGTGTTAGTAGTTATCTTATGAAGAAATGATGTTGTAACTATGCGAGGCAGCTTGATTGTGAGATCCCACTTCGGTTGGGGAGGAGAACGAAACATTCTTTAAAAGGGTGTGGAAACCTCTCTCTAGGAGATGCTTTTTAAAACCTTGAGGGAAATATCTGCTAGCGGTGGTCTTAGGCCGTTACATTGATAATCTTGTTCTTTTTTCAGACTCAGCTATTACTAGTAGTTAGTTTTTCTCTGTCTTGTTCTTAATTTCTTGCTTCATCATATTCAGGATGAGCCAACAGGGATGCTATTTGAAAATTTGAAATAAAGAAGTGGAAGTAATTACTTAAGAATACAACAGAAGTTATTGACTTTCTGGCATGAGGGATTTTTCTTTTGTGTATGAGATATGTCTACTTTTGGAGTTCTAGTTCATTCATTTGATGTGTACCCCTTGGATTCAGTTACTGTATAGTTGACTTTTGTGGGTGGCTATTCTGCCTCGTGGTCTTAATAATTTCTTTCAATTTTGGGATAACGTTTTCCACAAGCTAAGGTTTCTAATGAACTTTAAAAGTAAGGCCTTGAGCATCTTCGTAGACTTTGTGAATTTGAGATAGCAACTAAAGTTTGTACAGTGAAAGACTAGCTTATCCAAATTACTGTTCGAGAATATTTTATACTTCACCAAAACATCCATCTGGGCATACATCTGTGTTAGTATGTCCTTTTCAACTTGAAAAATGTAATAATTATTCTTGTAATCAAGGCTTTATTGCTTGTGTGCATGATATGGTTATCTTTTGGTGACTGTCATTTTATGGTCGTTTGTCAGTTCCCAAAACTTTATCTGCAAGAAACCATTGGAGTTGTATAATTATTTTAGTTCTTCATTGTTTGTGGATGAATTATTATTGTGCTACTCCCTGTAAATTTTTTTTTTAACATAATATCATTTCTGTAAAACAAAAGAAAAGGAAGGTAGTTAATGTGATGTTTTGCTGTTTTATGTTTTAAGTATGTAGTTTTAATACTTAATTCAAGTCCCTTATGCATGGTGTCACAATCGCACTTTTCATGGCTGCAGACGTTGCGATCGCAAGCATGACCGTGACACATTGCAGGGCTGATAATCAAGGATCTTAAGATGCTTCCGGTTCCAGTTCAACAGCTAAGTCCGTCATTTTCAACAAGATTTCTTGTTCTTGATAAAAGTATGCTAGGATTATCTATGCTTTTTAACTGTGACGCTGGGTAGATTTGAGCCATTACCAAACAAATGATGCATCTTTTAGTAGTACTGTGTCTTCCTTCGTCCTGGATCAAGCCATCTCTCTGTTTCTAATCTCCACTATATGTACAAGTCCATTATGGTCTGAAAGAAACAGCATTTTTAAAACTAGTACTATCATAGGGTAACTAAAGTAAATTTCTCCTCTTCCACCTGTTGGTCAATTCCGAAGTTCAATTCCTGATTATTTATGTTAGCATAGGAGCTGATTGCATTTCTTAATCATTCAATCTATAGAGATGGGAAAATATAACTTTGGGCTGGTTTAGAATTCCAATTCAAACACTTGTTTAGATGGTTAAATGTGAATGTTTCTAGTGTTGTTTCTGATGAGTTCCTTGACTTAGAAGACAAACTTCACATGTGCTTAAAAAGCAGTAAAAGAACATGTAGTTCTGAATGGCAACTTAGTATTTGTTTATTACAATTCTAGAAAGTTTCTTCAAAAGATGTCCTCTATTGAACTTGCATAGAGTGATTAATGTAAGTTCACTTTTGTCATCTTAGGCAAATTTGAACATTGCTATTGAAGTAATGAAAGAGAAACTTAGAGTTGGGCCTCTAATCAAAAGAATGAAAGAGAAACTTAGGTTG

mRNA sequence

AAAACGACGTTTTTATTTCCCCTAATTTTGCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCGCAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGAACTTAGACGTTGCGATCGCAAGCATGACCGTGACACATTGCAGGGCTGATAATCAAGGATCTTAAGATGCTTCCGGTTCCAGTTCAACAGCTAAGTCCGTCATTTTCAACAAGATTTCTTGTTCTTGATAAAAGTATGCTAGGATTATCTATGCTTTTTAACTGTGACGCTGGGTAGATTTGAGCCATTACCAAACAAATGATGCATCTTTTAGTAGTACTGTGTCTTCCTTCGTCCTGGATCAAGCCATCTCTCTGTTTCTAATCTCCACTATATGTACAAGTCCATTATGGTCTGAAAGAAACAGCATTTTTAAAACTAGTACTATCATAGGGTAACTAAAGTAAATTTCTCCTCTTCCACCTGTTGGTCAATTCCGAAGTTCAATTCCTGATTATTTATGTTAGCATAGGAGCTGATTGCATTTCTTAATCATTCAATCTATAGAGATGGGAAAATATAACTTTGGGCTGGTTTAGAATTCCAATTCAAACACTTGTTTAGATGGTTAAATGTGAATGTTTCTAGTGTTGTTTCTGATGAGTTCCTTGACTTAGAAGACAAACTTCACATGTGCTTAAAAAGCAGTAAAAGAACATGTAGTTCTGAATGGCAACTTAGTATTTGTTTATTACAATTCTAGAAAGTTTCTTCAAAAGATGTCCTCTATTGAACTTGCATAGAGTGATTAATGTAAGTTCACTTTTGTCATCTTAGGCAAATTTGAACATTGCTATTGAAGTAATGAAAGAGAAACTTAGAGTTGGGCCTCTAATCAAAAGAATGAAAGAGAAACTTAGGTTG

Coding sequence (CDS)

ATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGTCCTAAGGTTCTACGTCTGCTCTATTTCGTTGGTGCTGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCGCAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAATCTCCTAATGATGCGGTACAGAAAGTCGTTAAGTGA

Protein sequence

MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPNDAVQKVVK
Homology
[Close]
BLAST of Carg14742 vs. NCBI nr
Match: KAG7037451.1 (hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 7.3e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of Carg14742 vs. NCBI nr
Match: XP_022941532.1 (uncharacterized protein LOC111446806 [Cucurbita moschata] >KAG6607933.1 hypothetical protein SDJN03_01275, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of Carg14742 vs. NCBI nr
Match: XP_023522224.1 (uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 6.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIERKSLLQQ+QKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of Carg14742 vs. NCBI nr
Match: XP_022982102.1 (uncharacterized protein LOC111481043 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of Carg14742 vs. NCBI nr
Match: XP_023522217.1 (uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 6.4e-25
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIERKSLLQQ+QKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DA 63
          DA
Sbjct: 61 DA 62

[Close]
BLAST of Carg14742 vs. ExPASy TrEMBL
Match: A0A6J1FMP5 (uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC111446806 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAESPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of Carg14742 vs. ExPASy TrEMBL
Match: A0A6J1IVQ6 (uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.7e-28
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]
BLAST of Carg14742 vs. ExPASy TrEMBL
Match: A0A0A0L208 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTGEEV GPAGPK+LRLLYF GAGF+ + A+NKWREIER SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Carg14742 vs. ExPASy TrEMBL
Match: A0A6J1C1U1 (uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006563 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          M GEEV+GPAGPKVLR LYF GAGFVF IA+NKWRE+ER+SLLQQ QKQ L+HQF+E+PN
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Carg14742 vs. ExPASy TrEMBL
Match: A0A090ITT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60
          MTG+EV GPAGPK+LRLLYF GAGF+ + A+NKWREIER SLLQQ+QKQRL+HQ +ESPN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]
BLAST of Carg14742 vs. TAIR 10
Match: AT1G16916.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-13
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 8  GPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPNDAVQKVV 67
          GP  PK+LR++YFVGAGF+ T A+NKWRE+ER SLL+Q Q++         P D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 K 69
          K
Sbjct: 65 K 65

The following BLAST results are available for this feature:
BLAST of Carg14742 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037451.17.3e-29100.00hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022941532.12.8e-2898.53uncharacterized protein LOC111446806 [Cucurbita moschata] >KAG6607933.1 hypothet... [more]
XP_023522224.16.2e-2897.06uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022982102.11.8e-2795.59uncharacterized protein LOC111481043 [Cucurbita maxima][more]
XP_023522217.16.4e-2596.77uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg14742 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14742 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMP51.3e-2898.53uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC1114468... [more]
A0A6J1IVQ68.7e-2895.59uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043... [more]
A0A0A0L2081.1e-2279.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1[more]
A0A6J1C1U11.4e-2279.41uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A090ITT63.2e-2277.94Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
BLAST of Carg14742 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16916.16.0e-1354.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14742-RACarg14742-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane