Carg14667 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14667
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	histone H2B-like
Location	Carg_Chr01: 9562528 .. 9564150 (-)
RNA-Seq Expression	Carg14667
Synteny	Carg14667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCGAGAGCCAGCAACGGCGGAAACCGGCGGTGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGTAGTAATTTAACATTATAATAATGCTAATAATTTGTTTACATGAAGTCTTTAACCTTTTGTTTTGCAGGTGTAGTTAGGTATAACGACTCTCTATCATAGTAGGGTACGCTTCATTTTGAGTATAAACTCTCATGTCTTTGCTTTGAGTTTTTCTGGAAGGTCTCGTACCAATGGTAATGTATTTCTTACCTATAAAGCAATGACCATTCGCCAATGTGAGACTCTCTCCTAACAATTTTTCTCCCGAACAAAGTAGACTATAGAGCCTCCCGATGTCTATGGAGTTCTCGAACAATCTCACCTAATCCAGATTCGACTCCTCCTCTGGAGTTTTCGAATAAAGCACCCCCTTTGTTCAACACTTGAGTCAATTTTTAGCACACCTTCGAGAGCCTCCCTCGACTCTTTCAGGAGCCCTTCATCAGCCTCCCCTAATCGAGGCTTGACTCCTCCTCTGGAGTCTTCAAACAAAGTATCCCTTTGTTCTTTACTCCACTTTCCAGGCCTTTTGAGGCCTATGGAGCCTTCCATCAGTCTCCCTAATCGGCTCGACTCCTTCTTTGGAGTCTTCGAACAAAGTACACCATTTATTCGACATTTGAGTCACTTTTGACTAAGGCTCACACTTTTGGATTCTATTGACATGACTAAGTTAAGGGCATGACTGTGATACTATGTTAGCAATCACGAATCTCTATAATAGTATGATATGGACACAGGTATTGTTCATTTTGAGCCTAAACTCTCTTCCTTTGGGTTTCTTAGATTTCATCTCCAATCCCAAAAAGATTTCATACTAATGGAGATTATTCCTTATCTATAAATCCATGATCTTAGACAATATGGGACCCCTTCCCAACCATTCTCGACCATTCTCGACAGGTGTTAGAGAAAGCCGAAAGAAAAACGAGAAGAAAAAGGAGAGGGAAGTAAAGAAGAGGAGAAGCGGCCGGGGAAGAGAAGGGTACAAGAGGTACGTGTTCAAGGTGCTGAAGCAGGTGCATCCGGAGGTGGGGATATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATGTTCGAGAGGCTAGCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTTAACAACGACCAATTCTAACAATGTTTGGTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTGTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCTGAGGGGACTAAAGCGGTGTCAACTTACGTCTCTTATGATCATAGGAGAACCCAACCATAG

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCGAGAGCCAGCAACGGCGGAAACCGGCGGTGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTGTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCTGAGGGGACTAAAGCGGTGTCAACTTACGTCTCTTATGATCATAGGAGAACCCAACCATAG

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCGAGAGCCAGCAACGGCGGAAACCGGCGGTGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTGTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCTGAGGGGACTAAAGCGGTGTCAACTTACGTCTCTTATGATCATAGGAGAACCCAACCATAG

Protein sequence

MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP

Homology

[Close]

BLAST of Carg14667 vs. NCBI nr
Match: KAG7037380.1 (Histone H2B.2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 8.7e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGGQTLSSREIQGAVKLVFPGEL 120
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGGQTLSSREIQGAVKLVFPGEL
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGGQTLSSREIQGAVKLVFPGEL 120

Query: 121 GKHAVAEGTKAVSTYVSYDHRRTQP 146
           GKHAVAEGTKAVSTYVSYDHRRTQP
Sbjct: 121 GKHAVAEGTKAVSTYVSYDHRRTQP 145

[Close]

BLAST of Carg14667 vs. NCBI nr
Match: XP_022937552.1 (histone H2B.6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 143/221 (64.71%), Postives = 145/221 (65.61%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRRTIPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN---------------------- 120
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+                      
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRESRKKNEKKKEREVKKRRS 120

Query: 121 ------------------------------------------------------GGQTLS 146
                                                                 GGQTLS
Sbjct: 121 GGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQTLS 180

[Close]

BLAST of Carg14667 vs. NCBI nr
Match: XP_023537504.1 (histone H2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.9 bits (616), Expect = 3.4e-60
Identity = 142/221 (64.25%), Postives = 144/221 (65.16%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRR IPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN---------------------- 120
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN                      
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGIRESRKKHEKKKEREVKKRRR 120

Query: 121 ------------------------------------------------------GGQTLS 146
                                                                 GGQTLS
Sbjct: 121 GGGREGYKRYVFRVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQTLS 180

[Close]

BLAST of Carg14667 vs. NCBI nr
Match: XP_022969528.1 (histone H2B, gonadal-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 138/221 (62.44%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+T+EPATAETGGD VFRRTI VED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEPATAETGGDEVFRRTIQVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN---------------------- 120
           P+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RN                      
Sbjct: 61  PRTSTVWGDVKLTRPVDSTSEVTEDKDVTGKMESKPRNGVRGSRKKNEKKKEREVKKRRS 120

Query: 121 ------------------------------------------------------GGQTLS 146
                                                                 GGQTLS
Sbjct: 121 REGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQTLS 180

[Close]

BLAST of Carg14667 vs. NCBI nr
Match: KAG6586013.1 (Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.6 bits (475), Expect = 7.7e-44
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVV+GESQDVT+EPATAETGGDGVFRRTIPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVDGESQDVTQEPATAETGGDGVFRRTIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG 100
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG 99

[Close]

BLAST of Carg14667 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-09
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 101 QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 143
           +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Sbjct: 201 RTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of Carg14667 vs. ExPASy Swiss-Prot
Match: Q59VP1 (Histone H2B.2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HTB2 PE=3 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 39  REPATAETGG-DGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTED------KDVTGK 98
           ++PA  +T   DG  +RT   ++  +S ++  +K T P    S+           D+  +
Sbjct: 17  KKPAAKKTASTDGAKKRTKARKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFER 76

Query: 99  MESKAR-----NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           + S+A      N   T+S+REIQ AV+L+ PGEL KHAV+EGT+AV+ Y S
Sbjct: 77  IASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSS 127

[Close]

BLAST of Carg14667 vs. ExPASy Swiss-Prot
Match: P04255 (Histone H2B 1 OS=Caenorhabditis elegans OX=6239 GN=his-11 PE=1 SV=4)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-07
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 98  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           N   T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 81  NKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 120

[Close]

BLAST of Carg14667 vs. ExPASy Swiss-Prot
Match: Q27894 (Histone H2B 2 OS=Caenorhabditis elegans OX=6239 GN=his-4 PE=1 SV=3)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-07
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 98  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           N   T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 82  NKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of Carg14667 vs. ExPASy Swiss-Prot
Match: Q27484 (Probable histone H2B 3 OS=Caenorhabditis elegans OX=6239 GN=his-41 PE=3 SV=3)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-07
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 98  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           N   T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 82  NKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of Carg14667 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.7e-61
Identity = 143/221 (64.71%), Postives = 145/221 (65.61%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRRTIPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN---------------------- 120
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+                      
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRESRKKNEKKKEREVKKRRS 120

Query: 121 ------------------------------------------------------GGQTLS 146
                                                                 GGQTLS
Sbjct: 121 GGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQTLS 180

[Close]

BLAST of Carg14667 vs. ExPASy TrEMBL
Match: A0A6J1I190 (histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.3e-57
Identity = 138/221 (62.44%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+T+EPATAETGGD VFRRTI VED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEPATAETGGDEVFRRTIQVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN---------------------- 120
           P+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RN                      
Sbjct: 61  PRTSTVWGDVKLTRPVDSTSEVTEDKDVTGKMESKPRNGVRGSRKKNEKKKEREVKKRRS 120

Query: 121 ------------------------------------------------------GGQTLS 146
                                                                 GGQTLS
Sbjct: 121 REGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQTLS 180

[Close]

BLAST of Carg14667 vs. ExPASy TrEMBL
Match: A0A6J1FGB7 (histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.4e-44
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRRTIPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG 100
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+G
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG 99

[Close]

BLAST of Carg14667 vs. ExPASy TrEMBL
Match: A0A6J1I2V8 (histone H2B.4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.5e-40
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+T+EPATAETGGD VFRRTI VED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEPATAETGGDEVFRRTIQVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG 100
           P+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RNG
Sbjct: 61  PRTSTVWGDVKLTRPVDSTSEVTEDKDVTGKMESKPRNG 99

[Close]

BLAST of Carg14667 vs. ExPASy TrEMBL
Match: A0A5D3BHX3 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00310 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 100/193 (51.81%), Postives = 118/193 (61.14%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAET--GGDGVFRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+T+EP TAET  GG  +FRR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  ED---------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKA------------- 120
           E+         P T PV  + ++ R  DSTS++TED  VT +ME +              
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVLKQVHPEIGISGQ 120

Query: 121 -------------------------RNGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKA 145
                                      GG TLSSREIQGAV+LV PGELGKHA+AEGTKA
Sbjct: 121 AMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKA 180

[Close]

BLAST of Carg14667 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-10
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 101 QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 143
           +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Sbjct: 201 RTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of Carg14667 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 98  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 108 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

[Close]

BLAST of Carg14667 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 98  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 99  NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Carg14667 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 98  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 111 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 150

[Close]

BLAST of Carg14667 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 98  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 138
           N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 105 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

The following BLAST results are available for this feature:

BLAST of Carg14667 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037380.1	8.7e-72	100.00	Histone H2B.2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937552.1	1.2e-60	64.71	histone H2B.6-like isoform X1 [Cucurbita moschata]	[more]
XP_023537504.1	3.4e-60	64.25	histone H2B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969528.1	4.6e-57	62.44	histone H2B, gonadal-like isoform X1 [Cucurbita maxima]	[more]
KAG6586013.1	7.7e-44	97.98	Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg14667 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGE3	3.7e-09	69.05	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
Q59VP1	2.1e-07	36.04	Histone H2B.2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=H...	[more]
P04255	2.7e-07	67.50	Histone H2B 1 OS=Caenorhabditis elegans OX=6239 GN=his-11 PE=1 SV=4	[more]
Q27894	2.7e-07	67.50	Histone H2B 2 OS=Caenorhabditis elegans OX=6239 GN=his-4 PE=1 SV=3	[more]
Q27484	2.7e-07	67.50	Probable histone H2B 3 OS=Caenorhabditis elegans OX=6239 GN=his-41 PE=3 SV=3	[more]

BLAST of Carg14667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBI7	5.7e-61	64.71	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]
A0A6J1I190	2.3e-57	62.44	histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518...	[more]
A0A6J1FGB7	6.4e-44	97.98	histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]
A0A6J1I2V8	2.5e-40	92.93	histone H2B.4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 S...	[more]
A0A5D3BHX3	1.2e-34	51.81	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Carg14667 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08170.1	2.7e-10	69.05	Histone superfamily protein	[more]
AT1G07790.1	1.2e-07	65.00	Histone superfamily protein	[more]
AT2G37470.1	1.2e-07	65.00	Histone superfamily protein	[more]
AT2G28720.1	1.2e-07	65.00	Histone superfamily protein	[more]
AT3G46030.1	1.2e-07	65.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 92..109 score: 39.63 coord: 109..122 score: 64.49 coord: 122..135 score: 75.78
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 70..137 e-value: 0.0019 score: 18.0
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 99..139
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 85..138 e-value: 2.1E-14 score: 55.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 98..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..104
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 99..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14667-RA	Carg14667-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity