Carg14641 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14641
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	WAPL domain-containing protein
Location	Carg_Chr18: 2068760 .. 2069587 (-)
RNA-Seq Expression	Carg14641
Synteny	Carg14641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAGCAGAATGAGGAGGTAGCTCTTCTCGAAGGTGAAAAGGAAGCGGAAAAAATGATTGTTGAGGCTTATTCAGCGCTACTTCTAGCATTTCTTTCAACTGAAAGGTTAGTGCCTTTCTCTTAACCTTAGAACTGAATTAACTTCTCTTGAGGAACTTGTTCATGGATTTTTGTTCTTGTTTTCACAGCCATGGCATACGCGATGCAATCGTCGACTGTCTTCCAGAACACAAACTATCAATTCTCGTGCCAGTTTTGGAGCGATTCGTGGTATGTACATATTCATTCGACTTGCCATTCCTAACAAGAACACGCATGAATCTGGCCATCGTATGAAAACATGAAATACTCCCAAGATGGATGATGGGTTTTTCTGGGAATGATTATTTGATTGCATATTCTTCATGGCAATCTGTTCGATCTAACACGATTCATAAACTGTGTGAAACGACTGAAAATTCTTGTGTAGATAATATCATTTCTTGTTCTTGTTCTTGTTCTTCAGGCGTTTCATTTGACATTGAACATGATTTCCCCGGAGACACATAAAGCCGTAACCGAAGTGATTGAATCATGTAGAAATTCCTGAGAATTGAATCATGGGAGATTCTGTAAATTCTTAACCTCTGTAGGATTTCTTATCCTTAATTCATACCCCACAGAAATTAGAGAAAGCAAGCGGCAACATACGGACGAACCCAGAGGGGGCTGATCACTCATGTTGTTTTCTTTCTTGTTTAAAATTTTCAGAGTTCTCTCTTTCTCTATCCGTTTTGAGTTCTTATTTTCTTAATTTTTTGGTAGCTTTTCTTCTTCCTTGTAT

mRNA sequence

ATGATTGAGCAGAATGAGGAGGTAGCTCTTCTCGAAGGTGAAAAGGAAGCGGAAAAAATGATTGTTGAGGCTTATTCAGCGCTACTTCTAGCATTTCTTTCAACTGAAAGCCATGGCATACGCGATGCAATCGTCGACTGTCTTCCAGAACACAAACTATCAATTCTCGTGCCAGTTTTGGAGCGATTCGTGGCGTTTCATTTGACATTGAACATGATTTCCCCGGAGACACATAAAGCCGTAACCGAAGTGATTGAATCATGTAGAAATTCCTGAGAATTGAATCATGGGAGATTCTGTAAATTCTTAACCTCTGTAGGATTTCTTATCCTTAATTCATACCCCACAGAAATTAGAGAAAGCAAGCGGCAACATACGGACGAACCCAGAGGGGGCTGATCACTCATGTTGTTTTCTTTCTTGTTTAAAATTTTCAGAGTTCTCTCTTTCTCTATCCGTTTTGAGTTCTTATTTTCTTAATTTTTTGGTAGCTTTTCTTCTTCCTTGTAT

Coding sequence (CDS)

ATGATTGAGCAGAATGAGGAGGTAGCTCTTCTCGAAGGTGAAAAGGAAGCGGAAAAAATGATTGTTGAGGCTTATTCAGCGCTACTTCTAGCATTTCTTTCAACTGAAAGCCATGGCATACGCGATGCAATCGTCGACTGTCTTCCAGAACACAAACTATCAATTCTCGTGCCAGTTTTGGAGCGATTCGTGGCGTTTCATTTGACATTGAACATGATTTCCCCGGAGACACATAAAGCCGTAACCGAAGTGATTGAATCATGTAGAAATTCCTGA

Protein sequence

MIEQNEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFVAFHLTLNMISPETHKAVTEVIESCRNS

Homology

[Close]

BLAST of Carg14641 vs. NCBI nr
Match: KAG7012420.1 (hypothetical protein SDJN02_25172, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 4.2e-40
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MIEQNEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVL 60
          MIEQNEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVL
Sbjct: 1  MIEQNEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVL 60

Query: 61 ERFVAFHLTLNMISPETHKAVTEVIESCRNS 92
          ERFVAFHLTLNMISPETHKAVTEVIESCRNS
Sbjct: 61 ERFVAFHLTLNMISPETHKAVTEVIESCRNS 91

[Close]

BLAST of Carg14641 vs. NCBI nr
Match: XP_023542580.1 (uncharacterized protein LOC111802444 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV
Sbjct: 793 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 852

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCRNS
Sbjct: 853 AFHLTLNMISPETHKAVTEVIESCRNS 879

[Close]

BLAST of Carg14641 vs. NCBI nr
Match: KAG6573253.1 (Protein wings apart-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV
Sbjct: 807 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 866

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCRNS
Sbjct: 867 AFHLTLNMISPETHKAVTEVIESCRNS 893

[Close]

BLAST of Carg14641 vs. NCBI nr
Match: XP_023542579.1 (uncharacterized protein LOC111802444 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV
Sbjct: 799 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 858

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCRNS
Sbjct: 859 AFHLTLNMISPETHKAVTEVIESCRNS 885

[Close]

BLAST of Carg14641 vs. NCBI nr
Match: XP_022954612.1 (uncharacterized protein LOC111456825 isoform X2 [Cucurbita moschata])

HSP 1 Score: 166.8 bits (421), Expect = 8.8e-38
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERF+
Sbjct: 793 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFL 852

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCRNS
Sbjct: 853 AFHLTLNMISPETHKAVTEVIESCRNS 879

[Close]

BLAST of Carg14641 vs. ExPASy Swiss-Prot
Match: F4I7C7 (Wings apart-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=WAPL1 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-28
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           ++E A+LEGEKEAEKMIVEAYSALLLAFLSTES  IR++I D LP+  L+ILVPVLERFV
Sbjct: 844 DDEEAVLEGEKEAEKMIVEAYSALLLAFLSTESRSIRNSIKDYLPKRNLAILVPVLERFV 903

Query: 65  AFHLTLNMISPETHKAVTEVIESCRN 91
           AFH+TLNMI PETHKAV  VIESC++
Sbjct: 904 AFHMTLNMIPPETHKAVMGVIESCKS 929

[Close]

BLAST of Carg14641 vs. ExPASy Swiss-Prot
Match: Q9C951 (Wings apart-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=WAPL2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-26
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           ++E A+LE EKEAEKMIVEAYSALLLAFLSTES  IR+AI D LP+  ++ILVPVL+RFV
Sbjct: 754 DDEEAVLESEKEAEKMIVEAYSALLLAFLSTESRSIRNAIRDYLPKRDMAILVPVLDRFV 813

Query: 65  AFHLTLNMISPETHKAVTEVIESCR 90
           AFH TL+MI PETHK V EVIESC+
Sbjct: 814 AFHTTLDMIPPETHKVVMEVIESCK 838

[Close]

BLAST of Carg14641 vs. ExPASy TrEMBL
Match: A0A6J1GRC5 (uncharacterized protein LOC111456825 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456825 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.3e-38
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERF+
Sbjct: 799 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFL 858

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCRNS
Sbjct: 859 AFHLTLNMISPETHKAVTEVIESCRNS 885

[Close]

BLAST of Carg14641 vs. ExPASy TrEMBL
Match: A0A6J1GRE8 (uncharacterized protein LOC111456825 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456825 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.3e-38
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERF+
Sbjct: 793 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFL 852

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCRNS
Sbjct: 853 AFHLTLNMISPETHKAVTEVIESCRNS 879

[Close]

BLAST of Carg14641 vs. ExPASy TrEMBL
Match: A0A6J1K0X5 (uncharacterized protein LOC111490088 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490088 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.5e-38
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV
Sbjct: 799 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 858

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCR S
Sbjct: 859 AFHLTLNMISPETHKAVTEVIESCRKS 885

[Close]

BLAST of Carg14641 vs. ExPASy TrEMBL
Match: A0A6J1JYU8 (uncharacterized protein LOC111490088 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490088 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.5e-38
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV
Sbjct: 793 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 852

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHKAVTEVIESCR S
Sbjct: 853 AFHLTLNMISPETHKAVTEVIESCRKS 879

[Close]

BLAST of Carg14641 vs. ExPASy TrEMBL
Match: A0A6J1KJD1 (uncharacterized protein LOC111495758 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495758 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           NEEVALLEGEKEAEKMIVEAYSALLLAFLSTES GIRDAIVDCLP+H L+ILVPVLERFV
Sbjct: 794 NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESQGIRDAIVDCLPDHSLAILVPVLERFV 853

Query: 65  AFHLTLNMISPETHKAVTEVIESCRNS 92
           AFHLTLNMISPETHK VTEVIESCR S
Sbjct: 854 AFHLTLNMISPETHKTVTEVIESCRTS 880

[Close]

BLAST of Carg14641 vs. TAIR 10
Match: AT1G11060.1 (WAPL (Wings apart-like protein regulation of heterochromatin) protein )

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-29
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           ++E A+LEGEKEAEKMIVEAYSALLLAFLSTES  IR++I D LP+  L+ILVPVLERFV
Sbjct: 844 DDEEAVLEGEKEAEKMIVEAYSALLLAFLSTESRSIRNSIKDYLPKRNLAILVPVLERFV 903

Query: 65  AFHLTLNMISPETHKAVTEVIESCRN 91
           AFH+TLNMI PETHKAV  VIESC++
Sbjct: 904 AFHMTLNMIPPETHKAVMGVIESCKS 929

[Close]

BLAST of Carg14641 vs. TAIR 10
Match: AT1G61030.1 (WAPL (Wings apart-like protein regulation of heterochromatin) protein )

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-28
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 5   NEEVALLEGEKEAEKMIVEAYSALLLAFLSTESHGIRDAIVDCLPEHKLSILVPVLERFV 64
           ++E A+LE EKEAEKMIVEAYSALLLAFLSTES  IR+AI D LP+  ++ILVPVL+RFV
Sbjct: 754 DDEEAVLESEKEAEKMIVEAYSALLLAFLSTESRSIRNAIRDYLPKRDMAILVPVLDRFV 813

Query: 65  AFHLTLNMISPETHKAVTEVIESCR 90
           AFH TL+MI PETHK V EVIESC+
Sbjct: 814 AFHTTLDMIPPETHKVVMEVIESCK 838

The following BLAST results are available for this feature:

BLAST of Carg14641 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012420.1	4.2e-40	100.00	hypothetical protein SDJN02_25172, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023542580.1	4.0e-38	100.00	uncharacterized protein LOC111802444 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6573253.1	4.0e-38	100.00	Protein wings apart-like protein, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023542579.1	4.0e-38	100.00	uncharacterized protein LOC111802444 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022954612.1	8.8e-38	98.85	uncharacterized protein LOC111456825 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg14641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I7C7	1.7e-28	76.74	Wings apart-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=WAPL1 PE=2 SV=1	[more]
Q9C951	1.2e-26	74.12	Wings apart-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=WAPL2 PE=2 SV=1	[more]

BLAST of Carg14641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRC5	4.3e-38	98.85	uncharacterized protein LOC111456825 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GRE8	4.3e-38	98.85	uncharacterized protein LOC111456825 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K0X5	9.5e-38	98.85	uncharacterized protein LOC111490088 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JYU8	9.5e-38	98.85	uncharacterized protein LOC111490088 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KJD1	4.4e-35	93.10	uncharacterized protein LOC111495758 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Carg14641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11060.1	1.2e-29	76.74	WAPL (Wings apart-like protein regulation of heterochromatin) protein	[more]
AT1G61030.1	8.8e-28	74.12	WAPL (Wings apart-like protein regulation of heterochromatin) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1..91 e-value: 3.5E-27 score: 97.0
None	No IPR available	PANTHER	PTHR22100:SF14	BNAC08G42210D PROTEIN	coord: 5..89
IPR039874	Wings apart-like protein	PANTHER	PTHR22100	WINGS APART-LIKE PROTEIN HOMOLOG	coord: 5..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14641-RA	Carg14641-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007063	regulation of sister chromatid cohesion