Carg14574 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14574
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr18: 2463095 .. 2465375 (-)
RNA-Seq Expression	Carg14574
Synteny	Carg14574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACCATTTTGGGTACAAATTCATGGAGATGAACAACACCAGTCATCACAGTAAATCATTGGTCGTTTGTGTTCTTGTTGCTTTTCCTTTTGTGTTCCTCGTTCTATTCGTTTCACGTGTTTTCGTTACAAAATTACAAGTTTGGACCATAACATTCAAAAGCGTATGTCCATACATTGAATCTATAACGATGCTCTAGAGTATAAGACATTGTTTGATATTGTGAGATCCTAGATCGGTTGGAGAGGGAAACGAATCATTCTTTATAAAGGTGTGGAAATCTATTACCAGTAGATGAGTTTAATAAACCTTGAGGGGAAGCCCGATAGGAAAAGCCCAAATAGGACTGAGACCACTTGTCACAATCGCACTTTTGATGGTAGTAGACTTGCGATTGTGCGATACTCACTTCCCAGCAATAAGTGAGCTAAGTCAATTCGTTCTTGTGTCGCTTACAGCCAAGTGATGTATGCTCGAGCTTTTGGCCCTAGTTTAAGAAGAAAGTTTTAGAAAATGGGGTAGAGAGATTTCGAAAAAGAGTTTTGAAAGCAAGATTTGAAAGATTGAAATTGGTGTTATATGTGATGCAAGCAGAAAGACAACAACAACGGCTTACAGCATATAACTATTGGGTAGGGAGAATATCTACTAGTAGTGGGTTTGAACTGTTACAAATAGTATTAGAGCTAGACACCGGGTCATGTGCCAACAAGCGCAATGGGTCTCAAAGGGAGGTGGATTGGGAGTCTCACATCGATTGAAGAAGGTAACGAGTGCCAACGAGAACACTGGTCCCAAAGGAAAGGAGTGGATTGTGAGATTCCAGGGAAGGGCAACAAAACGTTCTTTATAAGGATATGAAAATCTCTCTCTAATAAACACATTTTATAACCCTTGAAGGGAAGCCCGAAAGAGAATCTGGGTTTGGACTGTTACAAATAGTATTAGAGATAGACACCGGGCCATGTGCCAGCAACGAGGCTAAACTCCAAATAGAGGTGGACACCAAACAGTATGCTAGCAAGGGCAATGGGCCCCAAAGGGAGGTGAACGAGTGCCAACGAGAACACTGACCATAAGGGAGGGGGAATGGGGATTGTGAGATTCCACATCAGTTGGGGAGGACGAAACGTTCTTTATAAGGGTATGCAAATCTTTCTCTAATACACGCATTTTAAAACCCTTGAAGGGAAAGCCCAAAAAGAACAATATCTACTAGCAGTGGATTTGAGCCGTTACAACTTCACACAATAATTACCCATTTAACTCGTTCGTTCATTCGTGAGAAAGGAGGTGGTTTGTGAATGTTTCACGTACACAATATGTTGGATGGGTGAGTGAAAGTAATGAATATCATCAGATGCATCAAAACATCATTCTCTCCTGGTTTTCTACCCCTCTCTTTTCAAAGAACAAACAAATCTAAACTACAAAAATTTCACTGATTAAAAAAAACCAACAGACAATACAGATCTCTCCTTCCAAGACTAAGTTGTGGCTTTATGGCTTTATTACTTACCACTCAAAACTGGGAAGACAAGGATGCCATGCCGCTGCTCATGCTCTGCCATTGACATGTCTTAGTTCTTTCTTTACACCCTCTCTCCATTCAAGAATCTTCTCAGCCTGATACTCATTTTGTTTGCCATCTCTCTCTCTGCTGGTGCAGCAAGCAAGCAAACGTTGTTCTTTCCTGTGTATCATCCTTCTTCAAGATGGAGGGAAGAAGCGGTTTAGATTAAAAGGAAGAGTATAGAACTCTTCATTCCTGGCGTCTCCCTTGAATGTCCTGAACTTAACCCACCATGGCATTCCCCTATCTCTAGCACTGTCTTTGTAGTCAAGTGTGTTATCCAAGAACACTGCAACAATGAGAGCTACTGATGGCGGGGAGAAGAAGATGGTGTTTAAGAAGTCGTTGAACTGAACATCGAGACGAAAAATCGTGTCAGAATTGAAAGAAATGGTTAGAGAGTTCATGTTTTTGGATAAAGTTAGCTCACAAACTCACCCATCCAGCGTTGGTGTGAGCAGGACCATGGAAAGCCTTTGCAGTGTACTCCCTAAAGTAATCAGGCACAGACAAACCCAAGAACAATGCTACACCAGTTATGAACAGATTCCTCATTGAATTCATGTTTGTGAATTGCAGAAATGATAACCCCACGGAGGCTGAGAAAGAGATATTGATTAACAAACATTCCATTTCCAGAGATACACAAAATGATTCTCATTGTGATATCAACTCACCAACAAGACCAAACAAGACACAGTAA

mRNA sequence

ATGGCAGACCATTTTGGGTACAAATTCATGGAGATGAACAACACCAGTCATCACAGCACAGACAAACCCAAGAACAATGCTACACCAGTTATGAACAGATTCCTCATTGAATTCATAAATGATAACCCCACGGAGGCTGAGAAAGAGATATTGATTAACAAACATTCCATTTCCAGAGATACACAAAATGATTCTCATTGTGATATCAACTCACCAACAAGACCAAACAAGACACAGTAA

Coding sequence (CDS)

ATGGCAGACCATTTTGGGTACAAATTCATGGAGATGAACAACACCAGTCATCACAGCACAGACAAACCCAAGAACAATGCTACACCAGTTATGAACAGATTCCTCATTGAATTCATAAATGATAACCCCACGGAGGCTGAGAAAGAGATATTGATTAACAAACATTCCATTTCCAGAGATACACAAAATGATTCTCATTGTGATATCAACTCACCAACAAGACCAAACAAGACACAGTAA

Protein sequence

MADHFGYKFMEMNNTSHHSTDKPKNNATPVMNRFLIEFINDNPTEAEKEILINKHSISRDTQNDSHCDINSPTRPNKTQ

Homology

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BLAST of Carg14574 vs. NCBI nr
Match: KAG7012486.1 (hypothetical protein SDJN02_25238, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MADHFGYKFMEMNNTSHHSTDKPKNNATPVMNRFLIEFINDNPTEAEKEILINKHSISRD 60
          MADHFGYKFMEMNNTSHHSTDKPKNNATPVMNRFLIEFINDNPTEAEKEILINKHSISRD
Sbjct: 1  MADHFGYKFMEMNNTSHHSTDKPKNNATPVMNRFLIEFINDNPTEAEKEILINKHSISRD 60

Query: 61 TQNDSHCDINSPTRPNKTQ 80
          TQNDSHCDINSPTRPNKTQ
Sbjct: 61 TQNDSHCDINSPTRPNKTQ 79

The following BLAST results are available for this feature:

BLAST of Carg14574 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012486.1	2.2e-37	100.00	hypothetical protein SDJN02_25238, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg14574 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14574 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14574 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14574-RA	Carg14574-RA	mRNA