Carg14535 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14535
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cytochrome b-c1 complex subunit 9-like
Location	Carg_Chr06: 2304720 .. 2305873 (+)
RNA-Seq Expression	Carg14535
Synteny	Carg14535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAGCAGCTCCAAGAAGCGGAGGCCTTTTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTTACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGTAATGTTGTTTACCTCATCTTTATGCTAATTTATGTGTGTTATGTTTTTTTTTTTTTTTTTTTTTTGGATTGTCAATTCATTAATTTCGTTTCCGCGTTTGATCTGAGGATCTAGTTTTTTTTGCAAATTACTAAATATTGGTATTAAACTGCCTGATTGACTGGTCATGTTCTCGCTGATCCATGAAAAAAAATTCAACGAACAGCTTGTTCATGTGTGGCCGCCGGCGAGAAGGAGTAGGTGGAACTGTATTGAAATTTATGGTTTATCTGCACGAGGAGAATTGATTAGGAGTAGAGGATTTCATATATTGGTTTCTGGCATCAATTGAAAAGTCCGGTTACACGATTGAACTGATTCAAAATATAACTATGAATTGCTTTCACGATTGTGTGCAGATTCTTAATTTATATAAAGTAACTTCGTATGTTTTCTTCATGTATGGAAATGCGGAGTTCGGCCATTATTTAGTCTGCTTACAATAGAAAAAGGACTTCCATTTTTTTTGTTTAAATTTGACACGATAATGAAAAGTGGAAGTGGTGGTAACCAAAAAAAAAACAACATAAGGACGTTTCTTCGTTTGTTCTATGCACTGTTATGTAATGGGCCTGAGCATCTTAAACTGTAGTGTGGGACTTATGAGTTGCTTGGTTTGTTGTTACTTTAAGTTTATGGTATCTTATTTTTACCTTAATGCTTGGATTTCCATTGGTGCAGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACCTACCCACATACATGATTTACTTTGTTTTTTTATGTACACATTTCACATGGACTTTCATTTTGGCATTTATTGTGTTCTCCAAATCCAGAATGCTTGATTTTTTTATTCTGGATGTTTTGGCTCCCATTTTCTGTTATCAGCTTCAAATTATCTATCAGTTTCAGCTTCTATTTGTGGTTATTGTGTTGAAGATTATGGCATTGCAGAACCTTTGCATTTTCATGATCTCTTCTATTTCATCATCTGGTTTAAAATGA

mRNA sequence

ATGAATTCAGCAGCTCCAAGAAGCGGAGGCCTTTTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTTACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGCTTCAAATTATCTATCAGTTTCAGCTTCTATTTGTGGTTATTGTGTTGAAGATTATGGCATTGCAGAACCTTTGCATTTTCATGATCTCTTCTATTTCATCATCTGGTTTAAAATGA

Coding sequence (CDS)

ATGAATTCAGCAGCTCCAAGAAGCGGAGGCCTTTTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTTACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGCTTCAAATTATCTATCAGTTTCAGCTTCTATTTGTGGTTATTGTGTTGAAGATTATGGCATTGCAGAACCTTTGCATTTTCATGATCTCTTCTATTTCATCATCTGGTTTAAAATGA

Protein sequence

MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLQIIYQFQLLFVVIVLKIMALQNLCIFMISSISSSGLK

Homology

[Close]

BLAST of Carg14535 vs. NCBI nr
Match: KAG7028107.1 (hypothetical protein SDJN02_09287, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.9 bits (450), Expect = 3.9e-41
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLQIIY 60
          MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLQIIY
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGLQIIY 60

Query: 61 QFQLLFVVIVLKIMALQNLCIFMISSISSSGLK 94
          QFQLLFVVIVLKIMALQNLCIFMISSISSSGLK
Sbjct: 61 QFQLLFVVIVLKIMALQNLCIFMISSISSSGLK 93

[Close]

BLAST of Carg14535 vs. NCBI nr
Match: XP_023005921.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]

BLAST of Carg14535 vs. NCBI nr
Match: KAG6596568.1 (Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
           MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 114 MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 168

[Close]

BLAST of Carg14535 vs. NCBI nr
Match: XP_023538974.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-21
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSA PRS GLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]

BLAST of Carg14535 vs. NCBI nr
Match: XP_022927398.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-21
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSA PRS GLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]

BLAST of Carg14535 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-17
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1  MNSAAPRS-GGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          M  AA R+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 1  MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

[Close]

BLAST of Carg14535 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-15
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MNSAAPRS-GGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          M SAA RS GG+ EG YR++MRR  VYVTF+IAGA +GERAVDYGV  LWE NNVG
Sbjct: 1  MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56

[Close]

BLAST of Carg14535 vs. ExPASy TrEMBL
Match: A0A6J1KWC9 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111498782 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]

BLAST of Carg14535 vs. ExPASy TrEMBL
Match: A0A6J1EKW3 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111434207 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSA PRS GLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]

BLAST of Carg14535 vs. ExPASy TrEMBL
Match: A0A1U8AUP9 (cytochrome b-c1 complex subunit 9-like OS=Nelumbo nucifera OX=4432 GN=LOC104607672 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          M+S A +SGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MDSTARKSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]

BLAST of Carg14535 vs. ExPASy TrEMBL
Match: A0A1U7YWR9 (cytochrome b-c1 complex subunit 9-like OS=Nelumbo nucifera OX=4432 GN=LOC104588621 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          M+S A RSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGER VDYGVHKLWEYNNVG
Sbjct: 1  MDSTARRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERVVDYGVHKLWEYNNVG 55

[Close]

BLAST of Carg14535 vs. ExPASy TrEMBL
Match: A0A314YLX6 (Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_40588 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MNSAAPRS-GGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          MNSAA RS GGLFEGLYRVIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]

BLAST of Carg14535 vs. TAIR 10
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein )

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-18
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1  MNSAAPRS-GGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          M  AA R+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 1  MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

The following BLAST results are available for this feature:

BLAST of Carg14535 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028107.1	3.9e-41	100.00	hypothetical protein SDJN02_09287, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023005921.1	1.1e-22	100.00	cytochrome b-c1 complex subunit 9-like [Cucurbita maxima]	[more]
KAG6596568.1	1.1e-22	100.00	Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperm...	[more]
XP_023538974.1	2.6e-21	96.36	cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo]	[more]
XP_022927398.1	2.6e-21	96.36	cytochrome b-c1 complex subunit 9-like [Cucurbita moschata]	[more]

BLAST of Carg14535 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXJ2	4.1e-17	78.57	Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
P46270	2.9e-15	71.43	Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]

BLAST of Carg14535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KWC9	5.2e-23	100.00	cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114987...	[more]
A0A6J1EKW3	1.3e-21	96.36	cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A1U8AUP9	1.4e-20	92.73	cytochrome b-c1 complex subunit 9-like OS=Nelumbo nucifera OX=4432 GN=LOC1046076...	[more]
A0A1U7YWR9	1.8e-20	92.73	cytochrome b-c1 complex subunit 9-like OS=Nelumbo nucifera OX=4432 GN=LOC1045886...	[more]
A0A314YLX6	4.1e-20	92.86	Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 ...	[more]

BLAST of Carg14535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52730.1	2.9e-18	78.57	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008027	Cytochrome b-c1 complex subunit 9	PFAM	PF05365	UCR_UQCRX_QCR9	coord: 14..55 e-value: 1.2E-17 score: 63.6
IPR008027	Cytochrome b-c1 complex subunit 9	PANTHER	PTHR12980	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT X	coord: 1..56
IPR036656	Cytochrome b-c1 complex subunit 9 superfamily	GENE3D	1.20.5.260		coord: 9..63 e-value: 1.1E-21 score: 78.3
IPR036656	Cytochrome b-c1 complex subunit 9 superfamily	SUPERFAMILY	81514	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 10..57
None	No IPR available	PANTHER	PTHR12980:SF4	CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKE	coord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14535-RA	Carg14535-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0015031	protein transport
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0008080	N-acetyltransferase activity