Carg14429 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14429
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 8716835 .. 8719749 (+)
RNA-Seq ExpressionCarg14429
SyntenyCarg14429
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATACGTCGACTTGGATGCTCTCATCGTGTTTTCTTCAGCATATAGTACAGAAGCATACATAATCGATGTTGCTTTATTTGCATTGCTGAATCAGCAGGTCTGCCCAGTCATCACGTCACGTTCTCGTGTATAATGGTGTTCTTATCGTCTCTAATAAGTCTGGTTTTTGTAGAATTTAGCAGGAACTCCTCACGCTCTTTTTCAGTGAAGTTGTTTGCTAAGCTTGAACCTCTGAAATAAATTGAACTTTTAAGTAGAATTTGATCTTGTTTATGATGCTTTCTTGCAAGAACATATTTGTTGAGTTTATGCAATATTCAGTTGAAAATCGTGGACCTTTCATTGGCATTACAATGCCTTAATATAATATCTTAAAACTTTACCACATTAACCACAATGAATTAATAGGGTTCCGGGTTTAGACGTTACGATACTTTGAAGCGCATAGAATAATACCGAAGTGTTAATACATTGACCATTCATATTCATGTTCCTCTCCCTTGTTCGAATGAGGTATCGTGTAGACAATTGAGAACTAACTGTCGATATGAAGTCCCATTCTCATCTCATATAGTCCCATTCTCATCTCATATGAATCATAAGTTCGAATCTCTAATTTCTATTGAATTATAATACTTTTAATGATAATAATGAAACCCTTTTGTGTTTGGATTGATGGAGGGGCGGGCCTACCCAGGAACTTAAAATTTCTGAACCAGCATGACAATTTGACATCATGAGCAGTGTCAACCCATCTGATTACTCCTATCTCTTCCCTCTACAGCTGCACCCTGAGAGTCACAGTAGACCAGAGCAGTGTCAACCTTTTTTCTGGTAGGTTTATGTTAAACCACAATCATAATATGTACACTACGAGGGGTGATATGGGAAAAGGCCACTAGACAAGTCGTTAGTGGAAAGTAGTGTACGGACGAGCATGGAAGTGAGATTATATTTATGAGATCTCACATCGAGCGTGTGAAAACCTCTCCCTAGTAGAGGTATTTTAAAAACCTTGAGGGAAAGCCCAAACGGGAAAGTCCAAAGAGGACCATATCTGTTAGCAGTAGACTTGGGGTATTACAAATGGTATCAGAGCCAAACACCGAGCGATGTGCCAACGAGGAGGCTGAGCCCCGAAGGGGGGTTGACACGAGGCGGTGTGCTAGTAGGGATGCTAAGCCTTGAAGAGGAGTGGATTGAGGGTCCCATATCGATTGGAGAAGGGAACAAGTGCCAGCAAGAACGCTGGGCCCCAAAGAGGGGGTGGATTTTAAGATCCCATATCGGTTGAGAAAGAGAATAAAACATTTTTTATAAGGGTATGAAAACCTCTCCCTGATAGACGCGTTTTAAAAACATTGAGAAGCTCAAAGAGGACAATATCTACTAGTGGTGGGCTTAAAATGTTACAATGCTAGGGGAAGGGGAGCGTTTATTATGAGCATTAGAACAATGTTCTAGGGTGTAAAGTTACCGGCTCTCTTGAATTGGCTGGGCTGTCTTGTATTCTAGTTGGAACCATGTTTTCCCTTTAGTTTCAATGAAAAGAGGTAAGAAAGTATCCTTACAGGTTGATCGAAAGGGTGGAGCTCACAGCAACCTGAAACTCTGGCAAAGTGACTTGACATCATGAGCAGTGTAACCATCTAATTAATACCAGCTCTGTCGCTGAAAGAATATTTTCAAGTATGTAAACCCCATACAACCAAATCACTGAGCATAGCATTCAGGTTAATGAATGAAATAGTTTATAGTACAAACTAATCTTTCTCTATCCAAATAAGAGGCATCAGACATTCAATCTTGTATCGGGAACAAATGTCATTATTTGGTTGGAAATATGTACACACTGATCATTGCAATTATTAAGGATATCTTGTAGAGTATAAAATGAAGGTGCAAAAGAACTGACCCTTTTTTCAAATTGCTCAGCAGCAGCAGCAGCAGCAACAGTTTTTCTCGAACCAAGTATCAACAGGAGACTTCGAGCAAAGATCTGAACATAAAAGATCAAAAAAGTAATTTTATAGACCTGGTATCATATGTAGGATTGCTTTTGGGTCATTCCATTGATCTACTGAGTTCTTTGGCGTTCTTTAGAACCCCCATAAGTCTGCCAATTTCAAAAGATGGGTAGGCTTAGTTTTTAAACGACATGGATTTGCCTCTTTTGAAGCTTTGCACCTTCAGGAGCAAGAGTTTGTCCCACCACTATGACAATTACACTTGACAGCTTAAATGCCCTTAGCCCACGGTTCTTTTAATCCTTCCTTCCACAGTTCCCATCTCCATTTTGGTCTTGGATGATTAACTGCACGTTTTGACATGATTCCACCAGCAAGGTGAGAATCGGCATTGTGATAGATGAGCAATTCCATATCGAGGGAGTCGGTACATTTTTCCAAAATGGGAATGATAAATGGAAGTTTTAACTCAATCTTGTAGGTTTCAAGGCTAGCATGAAGCTTTTTCAAATCTCTCATCCCTATCCGTCCATCCAAACCTTCAGCTTGATAACAAGTCTCGGCTTCTGAGAAAACTCCTGGACCCAATTTAAGAAAGCTAAGATTTGGAAATATTTCAAACAGTGTATCAAGGCAAAGCTTAACAGATTCAACAGATTCAGCACGTTGCATTGTATTGAGAGTGAGTTCCTTTATAGTTCTTGCAGATGAAAATGTTGTGATGAGACTGTAAAGACACGGAAAATGAAGCTGAAGCTTTCTCAAGCAAGGGAATTCATTAACTTGTAACCCACTTGCATCTTGTAGACAAAAATGAAAATCAGATAGCATGGGAGTTTGGATAATAAGAGATTTTGGTTTGACACACTTCAGTTCAAGTTTTGATAGGCTTGGTGCACATATGCTCAGAGAAACTGGAGCATTTGACACTGTCCATCGACAG

mRNA sequence

ATGGAATACGTCGACTTGGATGCTCTCATCGTGTTTTCTTCAGCATATAGTACAGAAGCATACATAATCGATGTTGCTTTATTTGCATTGCTGAATCAGCAGCAGCAGCAGCAGCAGCAACAGTTTTTCTCGAACCAAGTATCAACAGGAGACTTCGAGCAAAGATCTGAACATAAAAGATCAAAAAATTCAAGTTTTGATAGGCTTGGTGCACATATGCTCAGAGAAACTGGAGCATTTGACACTGTCCATCGACAG

Coding sequence (CDS)

ATGGAATACGTCGACTTGGATGCTCTCATCGTGTTTTCTTCAGCATATAGTACAGAAGCATACATAATCGATGTTGCTTTATTTGCATTGCTGAATCAGCAGCAGCAGCAGCAGCAGCAACAGTTTTTCTCGAACCAAGTATCAACAGGAGACTTCGAGCAAAGATCTGAACATAAAAGATCAAAAAATTCAAGTTTTGATAGGCTTGGTGCACATATGCTCAGAGAAACTGGAGCATTTGACACTGTCCATCGACAG

Protein sequence

MEYVDLDALIVFSSAYSTEAYIIDVALFALLNQQQQQQQQQFFSNQVSTGDFEQRSEHKRSKNSSFDRLGAHMLRETGAFDTVHRQ
Homology
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BLAST of Carg14429 vs. NCBI nr
Match: KAG7012854.1 (hypothetical protein SDJN02_25607, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.2e-36
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MEYVDLDALIVFSSAYSTEAYIIDVALFALLNQQQQQQQQQFFSNQVSTGDFEQRSEHKR 60
          MEYVDLDALIVFSSAYSTEAYIIDVALFALLNQQQQQQQQQFFSNQVSTGDFEQRSEHKR
Sbjct: 1  MEYVDLDALIVFSSAYSTEAYIIDVALFALLNQQQQQQQQQFFSNQVSTGDFEQRSEHKR 60

Query: 61 SKNSSFDRLGAHMLRETGAFDTVHRQ 87
          SKNSSFDRLGAHMLRETGAFDTVHRQ
Sbjct: 61 SKNSSFDRLGAHMLRETGAFDTVHRQ 86

The following BLAST results are available for this feature:
BLAST of Carg14429 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012854.11.2e-36100.00hypothetical protein SDJN02_25607, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg14429 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14429 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14429 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14429-RACarg14429-RAmRNA