Carg14422 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14422
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 8770885 .. 8771860 (-)
RNA-Seq ExpressionCarg14422
SyntenyCarg14422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTCCGTAATTTCCCGCTACATTTAGGCGCCTTCTGGACAATAGAATGGGCCTTAGAAAAAGCCCAATGCCGGAGCCCAATGCTGGAGCCCAATGCGGAGCCCAATGCCGGAGCCCAATATTGTGGTTTATTAGAAAATTACCCAAAACTAATTTTTTAAATATATATATTGCAAAAATATAAAATAATATTTTTAACTTTATAAATTAATGCATTAGTTAAATAAATAAAATTAATTTCAAATGAATTTAATTGTTAATATTTTCTTAATTTTTTTAACTTAATTTTTTTGTTAATAAATAAATGTTTACCTTTAAATACTTTTTAAAAAATCTAAAAATACATTTATTATTAATATTAATTGAGAAAAATATATTAATAAACTTTCACAACTGTGTCCGTAAGATCTAACGATGTAAAAATCCAACGGCTGACATTCTTCCACCGACGTGGAATTATTATTTAAATTGATTTAAGAAATAACAAATTAATCCAAAGTAAAAATTTGTATAAAAAAAAAAAAAAAAAAAAAATCCTCTCTTTGTTCATTGCCGCCTCACCGAGGGAAGCGCCATATAATAAGAGATATGCGGAACTTTTCGGTGGTGTTGCTCTGCAGAATCAGAACCTTGGGGGGATTTGCCTGGAACTTTTCGGATCTTTTTGCTGTTCTTCAACGTGTTGAGATTCCGTATCCGTTCATTTCTGATAAAAGGTTCGGAATCAACTTTTGCAGTTTTCGTTATTGGTCTTAATCATATATTTGTTGCAATGGCGCCAATTATATGGGAAGGGATTGGTTCTGGTTGTGCGGGTAGCTTGATTGGTTTGGCAGTTCTTCCGGTAGAATTGTTTTTGAATTTTATGGTTTTTTTCTTGTTGAATTTTGGAGATCTGAAATCGAGGGCGTGACGGTGGTTCTTGCACGATGATCTTTTTAGGCAAACTTTTCTGTTTCGTTTGATTGGTGA

mRNA sequence

ATGGGCTTCCGTAATTTCCCGCTACATTTAGGCGCCTTCTGGACAATAGAATGGGCCTTAGAAAAAGCCCAATGCCGGAGCCCAATGCTGGAGCCCAATGCGGAGCCCAATGCCGGAGCCCAATATTGTGAATCAGAACCTTGGGGGGATTTGCCTGGAACTTTTCGGATCTTTTTGCTGTTCTTCAACGTGTTGAGATTCCGTATCCGTTCATTTCTGATAAAAGGTTCGGAATCAACTTTTGCAGTTTTCGTTATTGGTCTTAATCATATATTTGTTGCAATGGCGCCAATTATATGGGAAGGGATTGGTTCTGGTTGTGCGGGTAGCTTGATTGGTTTGGCAGTTCTTCCGGCAAACTTTTCTGTTTCGTTTGATTGGTGA

Coding sequence (CDS)

ATGGGCTTCCGTAATTTCCCGCTACATTTAGGCGCCTTCTGGACAATAGAATGGGCCTTAGAAAAAGCCCAATGCCGGAGCCCAATGCTGGAGCCCAATGCGGAGCCCAATGCCGGAGCCCAATATTGTGAATCAGAACCTTGGGGGGATTTGCCTGGAACTTTTCGGATCTTTTTGCTGTTCTTCAACGTGTTGAGATTCCGTATCCGTTCATTTCTGATAAAAGGTTCGGAATCAACTTTTGCAGTTTTCGTTATTGGTCTTAATCATATATTTGTTGCAATGGCGCCAATTATATGGGAAGGGATTGGTTCTGGTTGTGCGGGTAGCTTGATTGGTTTGGCAGTTCTTCCGGCAAACTTTTCTGTTTCGTTTGATTGGTGA

Protein sequence

MGFRNFPLHLGAFWTIEWALEKAQCRSPMLEPNAEPNAGAQYCESEPWGDLPGTFRIFLLFFNVLRFRIRSFLIKGSESTFAVFVIGLNHIFVAMAPIIWEGIGSGCAGSLIGLAVLPANFSVSFDW
Homology
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BLAST of Carg14422 vs. NCBI nr
Match: KAG7012861.1 (hypothetical protein SDJN02_25614, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.6 bits (688), Expect = 1.3e-68
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MGFRNFPLHLGAFWTIEWALEKAQCRSPMLEPNAEPNAGAQYCESEPWGDLPGTFRIFLL 60
           MGFRNFPLHLGAFWTIEWALEKAQCRSPMLEPNAEPNAGAQYCESEPWGDLPGTFRIFLL
Sbjct: 1   MGFRNFPLHLGAFWTIEWALEKAQCRSPMLEPNAEPNAGAQYCESEPWGDLPGTFRIFLL 60

Query: 61  FFNVLRFRIRSFLIKGSESTFAVFVIGLNHIFVAMAPIIWEGIGSGCAGSLIGLAVLPAN 120
           FFNVLRFRIRSFLIKGSESTFAVFVIGLNHIFVAMAPIIWEGIGSGCAGSLIGLAVLPAN
Sbjct: 61  FFNVLRFRIRSFLIKGSESTFAVFVIGLNHIFVAMAPIIWEGIGSGCAGSLIGLAVLPAN 120

Query: 121 FSVSFDW 128
           FSVSFDW
Sbjct: 121 FSVSFDW 127

The following BLAST results are available for this feature:
BLAST of Carg14422 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012861.11.3e-68100.00hypothetical protein SDJN02_25614, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg14422 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14422 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14422 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14422-RACarg14422-RAmRNA