Carg14373 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14373
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 9924700 .. 9925651 (+)
RNA-Seq ExpressionCarg14373
SyntenyCarg14373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGGTTTAACGGGTACCCATAAACTAGAAATTCCATTCTGATTTGTTGAGATCGTCTCTTTCTCCTACTTTGCGAGTCTGAATCTTCTCTTCATCTACCCAACACGGAGTTTAATGCACCAAAACCCTAATTCCTGTTGCTGGAATGTGTTTTTGGTGTGTAATTTCTGTTATTTACTTGATTCTTATGTAATTTTTAATTACTATGGCTTGCTGTTGATTCATGTGGTGTGTGCTTTTGCTTTTTATATTTGGATCTATGTTGGTTTTGTTTCCATTTCGGGATCTGAGTTTGGCTCTTTGATTTATTAATGGAAAGTTGTGTGTCTTGCTTTCCTTCATTTTGGTTCTTGTTGCTGGGAATTTCAGGAAATGGATGATGATAATCTCGAATATTTGTGTGTGGATTTGTTGTGAGATTCATTTTTTGATGCTTGTTTGATGTGATGGATCTTTGACTCGTGTTTGCAGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGTAGAAGAACTTTTCCGCAATTGGGGTTCGACATTGCTCACAATCAGTTCTTGGCTTCTGATCCGTGATTGCGCATCCAAATACGGTGCCTTCGATCTGAAATTCCCATTTTGATCGGCTTCTGTACCACTAACTTGTGTTTCTTCTTCTAACATTCTAATCTGGCAGTACGTTATGTGACATATTCGTTTATAATTGGAAGCATAAGTAGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTAGGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

mRNA sequence

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

Coding sequence (CDS)

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

Protein sequence

MERGAYNAINTHAPIDPASGSLETEFLTIDRAGLVAFKFGTSMIVLIARIHTNLYRRIRNVVMLYALLRDLNQRRSPFRVVLSWIIEGT
Homology
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BLAST of Carg14373 vs. NCBI nr
Match: KAG7013108.1 (putative methyltransferase PMT4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 43/75 (57.33%), Postives = 48/75 (64.00%), Query Frame = 0 

Query: 15 IDPASGSLETEFLTIDRAGLVAFKFGTSMIVLIARIHTNLYRRIRNVVMLYALLRDLNQR 74
          +D A+  LETEFLTIDR GL+  KFG      I              VMLYALLRDLN+R
Sbjct: 11 VDLAADCLETEFLTIDRVGLIGLKFGLKNSCAIG-------------VMLYALLRDLNRR 70

Query: 75 RSPFRVVLSWIIEGT 90
          R PFRVVL+WIIEGT
Sbjct: 71 RFPFRVVLNWIIEGT 72

The following BLAST results are available for this feature:
BLAST of Carg14373 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013108.11.5e-1057.33putative methyltransferase PMT4, partial [Cucurbita argyrosperma subsp. argyrosp... [more]
BLAST of Carg14373 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14373 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14373 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14373-RACarg14373-RAmRNA