Carg14335 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14335
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	hybrid signal transduction histidine kinase L
Location	Carg_Chr04: 10118685 .. 10119182 (-)
RNA-Seq Expression	Carg14335
Synteny	Carg14335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCTGCCGTTGGCAGCCAACCTCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCCGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTTGAAAATGGCCAAATCAAGCACGCGGATGATCATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

mRNA sequence

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCTGCCGTTGGCAGCCAACCTCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCCGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTTGAAAATGGCCAAATCAAGCACGCGGATGATCATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

Coding sequence (CDS)

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCTGCCGTTGGCAGCCAACCTCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCCGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTTGAAAATGGCCAAATCAAGCACGCGGATGATCATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

Protein sequence

MSDLQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTKGNGHGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV

Homology

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: KAG7032287.1 (hypothetical protein SDJN02_06331, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.3 bits (843), Expect = 1.9e-86
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MSDLQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRL 60
           MSDLQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRL
Sbjct: 1   MSDLQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRL 60

Query: 61  CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK 120
           CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK
Sbjct: 61  CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK 120

Query: 121 GNGHGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV 166
           GNGHGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV
Sbjct: 121 GNGHGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV 165

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_023543410.1 (uncharacterized protein LOC111803300 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 5.1e-84
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MSDL-QQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MSDL QQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR
Sbjct: 48  MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 107

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT
Sbjct: 108 LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 167

Query: 121 KGNGHGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV 166
           KGNGHGPNGPNGHSHGFKPFENGQIKHADD HHEGDFKFKAAAHPV
Sbjct: 168 KGNGHGPNGPNGHSHGFKPFENGQIKHADDDHHEGDFKFKAAAHPV 213

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: KAG6601504.1 (hypothetical protein SDJN03_06737, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 165/169 (97.63%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 1   MSDL-QQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MSDL QQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR
Sbjct: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT
Sbjct: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120

Query: 121 KGNGH---GPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV 166
           KGNGH   GPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV
Sbjct: 121 KGNGHGPNGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV 169

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_022956516.1 (uncharacterized protein LOC111458233 [Cucurbita moschata])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 161/170 (94.71%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MSDLQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRL 60
           MSDL  QQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVAC LGRL
Sbjct: 1   MSDL--QQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACLLGRL 60

Query: 61  CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK 120
           CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK
Sbjct: 61  CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK 120

Query: 121 GNGHGPNGPNGHSHGFKPFEN-----GQIKHADDHHHEGDFKFKAAAHPV 166
           GNGHGPNGPNGHSHGFKPFEN     GQIKHADD HHEGDFKFKAAAHPV
Sbjct: 121 GNGHGPNGPNGHSHGFKPFENGGEMRGQIKHADDDHHEGDFKFKAAAHPV 168

[Close]

BLAST of Carg14335 vs. NCBI nr
Match: XP_022972292.1 (uncharacterized protein LOC111470841 [Cucurbita maxima] >XP_022972361.1 uncharacterized protein LOC111470841 [Cucurbita maxima])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 155/167 (92.81%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 4   LQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR 63
           + + QQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR
Sbjct: 1   MSELQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR 60

Query: 64  RAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTKGNG 123
           RAENQRAKPEKTHGGARPRGKEPKLHPDK+GDIEFGLDLRNPNGKGKA SGGNGGTKGNG
Sbjct: 61  RAENQRAKPEKTHGGARPRGKEPKLHPDKDGDIEFGLDLRNPNGKGKALSGGNGGTKGNG 120

Query: 124 HGPNGPNGHSHGFKPFEN-----GQIKHADDHHHEGDFKFKAAAHPV 166
           HGPN PNGHSHGFKPFEN     GQIKHADDHHHEGDFKFKAAAHPV
Sbjct: 121 HGPNEPNGHSHGFKPFENGGEMRGQIKHADDHHHEGDFKFKAAAHPV 167

[Close]

BLAST of Carg14335 vs. ExPASy TrEMBL
Match: A0A6J1GWS9 (uncharacterized protein LOC111458233 OS=Cucurbita moschata OX=3662 GN=LOC111458233 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.4e-81
Identity = 161/170 (94.71%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MSDLQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRL 60
           MSDL  QQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVAC LGRL
Sbjct: 1   MSDL--QQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACLLGRL 60

Query: 61  CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK 120
           CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK
Sbjct: 61  CNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTK 120

Query: 121 GNGHGPNGPNGHSHGFKPFEN-----GQIKHADDHHHEGDFKFKAAAHPV 166
           GNGHGPNGPNGHSHGFKPFEN     GQIKHADD HHEGDFKFKAAAHPV
Sbjct: 121 GNGHGPNGPNGHSHGFKPFENGGEMRGQIKHADDDHHEGDFKFKAAAHPV 168

[Close]

BLAST of Carg14335 vs. ExPASy TrEMBL
Match: A0A6J1I4F2 (uncharacterized protein LOC111470841 OS=Cucurbita maxima OX=3661 GN=LOC111470841 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.0e-79
Identity = 155/167 (92.81%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 4   LQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR 63
           + + QQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR
Sbjct: 1   MSELQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR 60

Query: 64  RAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTKGNG 123
           RAENQRAKPEKTHGGARPRGKEPKLHPDK+GDIEFGLDLRNPNGKGKA SGGNGGTKGNG
Sbjct: 61  RAENQRAKPEKTHGGARPRGKEPKLHPDKDGDIEFGLDLRNPNGKGKALSGGNGGTKGNG 120

Query: 124 HGPNGPNGHSHGFKPFEN-----GQIKHADDHHHEGDFKFKAAAHPV 166
           HGPN PNGHSHGFKPFEN     GQIKHADDHHHEGDFKFKAAAHPV
Sbjct: 121 HGPNEPNGHSHGFKPFENGGEMRGQIKHADDHHHEGDFKFKAAAHPV 167

[Close]

BLAST of Carg14335 vs. ExPASy TrEMBL
Match: A0A0A0KTP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G601520 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56
Identity = 136/189 (71.96%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MSDLQQ-----QQQQQQPALVYPNTAA--VGSQPPPSHHSNGSFGAVFIVLAVILVISTV 60
           MS+LQQ     QQQQQQPA VYP+TAA   GSQ PP HHSNGSFGAVFIVLAVI+VIS +
Sbjct: 1   MSELQQQQPQRQQQQQQPAYVYPDTAATSAGSQVPPPHHSNGSFGAVFIVLAVIVVISAL 60

Query: 61  ACFLGRLCNRRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGKGKA 120
           ACFLGRLCNRR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GKGK 
Sbjct: 61  ACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKF 120

Query: 121 PSGGNGGT---------KGNGHGP---NGPNGHSHGFKPFENG-----QIKHADDHHHEG 164
           PSGGNG T         KGNG+GP   NGPNGH + FKPFENG     +IKH D  HHEG
Sbjct: 121 PSGGNGSTGNGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEG 180

[Close]

BLAST of Carg14335 vs. ExPASy TrEMBL
Match: A0A5A7ST81 (Hybrid signal transduction histidine kinase L OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001050 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 131/179 (73.18%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 5   QQQQQQQQPALVYPNTAA--VGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCN 64
           QQQQQQQQPA VYP+TAA   GSQ PPSHHSNGSFGAVFIVLAVI+VIS +ACFLGRLCN
Sbjct: 13  QQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVISALACFLGRLCN 72

Query: 65  RRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGG-- 124
           RR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GKGK P GGNG   
Sbjct: 73  RRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKFPPGGNGNGN 132

Query: 125 ------TKGNGHGP---NGPNGHSHGFKPFENG-----QIKHADDHHHEGDFKFKAAAH 164
                  KGNG+GP   NGPNGH + FKPFENG     +IKH D  HHEGDF FKA  H
Sbjct: 133 GNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEGDFNFKAGGH 189

[Close]

BLAST of Carg14335 vs. ExPASy TrEMBL
Match: E5GBJ1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 131/179 (73.18%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 5   QQQQQQQQPALVYPNTAA--VGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCN 64
           QQQQQQQQPA VYP+TAA   GSQ PPSHHSNGSFGAVFIVLAVI+VIS +ACFLGRLCN
Sbjct: 13  QQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVISALACFLGRLCN 72

Query: 65  RRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGG-- 124
           RR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GKGK P GGNG   
Sbjct: 73  RRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKFPPGGNGNGN 132

Query: 125 ------TKGNGHGP---NGPNGHSHGFKPFENG-----QIKHADDHHHEGDFKFKAAAH 164
                  KGNG+GP   NGPNGH + FKPFENG     +IKH D  HHEGDF FKA  H
Sbjct: 133 GNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEGDFNFKAGGH 189

[Close]

BLAST of Carg14335 vs. TAIR 10
Match: AT1G23530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-13
Identity = 68/181 (37.57%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 5   QQQQQQQQPALVYPNT-----AAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 64
           Q  QQ QQP +VYPN          ++P  S  S+G+FG VFIVLAVI V+S +AC  GR
Sbjct: 4   QGVQQMQQPIVVYPNAYNKQYPDPSTKPSSSSGSSGNFGTVFIVLAVIFVLSALACVFGR 63

Query: 65  LCNRR---AENQRAKPEKTHGGARPRGKE---PKLHPDKEGDIEFGLDLRNPNGKGKAPS 124
           LCNR    A+ Q +K  K    +  + +E    +  P + GD++FG D++ P    K PS
Sbjct: 64  LCNRESRAAKQQHSKHPKHEKASSKKSREIRPVEREPRERGDMDFGFDMKRPEPIEK-PS 123

Query: 125 GGNGGTK----------------GNGHGPNGPN-GHSHGFKPFENGQIKHADDHHHEGDF 158
           G +GG                  G G GP  PN  H+  FK  ENG      DHH +G+ 
Sbjct: 124 GRDGGEDIEFGFDNKRGERGREGGGGGGPPPPNIKHAVRFKLPENG------DHHSKGEI 177

[Close]

BLAST of Carg14335 vs. TAIR 10
Match: AT1G70470.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23530.1); Has 64 Blast hits to 64 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 10; Plants - 43; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-11
Identity = 57/148 (38.51%), Postives = 76/148 (51.35%), Query Frame = 0


Query: 6   QQQQQQQPALVYPNTAAVGSQ--PPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR 65
           Q Q+ QQP  VYP+T++  S    P S  S+GSFG  FIVLA ILV++ +AC  GRLCNR
Sbjct: 4   QPQEFQQPQ-VYPSTSSSTSSSFSPSSSGSSGSFGTAFIVLAAILVLAALACVFGRLCNR 63

Query: 66  -------RAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGN 125
                  +  N+ +K EK         +  +  P + GD+EFG D++ P    K P+G N
Sbjct: 64  GGKQHKDKNNNKASKHEKPSSKKSREIRPVEREPRERGDVEFGFDMKRPGPMSK-PTGRN 123

Query: 126 GG------TKGNGHGPNGPNGHSHGFKP 139
           GG          G G  G  G   G +P
Sbjct: 124 GGDIEFGFDNKRGGGGGGGGGGKGGKRP 149

[Close]

BLAST of Carg14335 vs. TAIR 10
Match: AT1G74055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 3.2e-04
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 4  LQQQQQQQ----QPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 63
          +QQQ QQQ    +   +  N   + +   P+H+S+ S G  F V++V+++++ ++CFLGR
Sbjct: 15 IQQQPQQQLGGNEITPMATNANLIAAPNAPNHYSSSSIGPFFAVISVLIILAVLSCFLGR 74

The following BLAST results are available for this feature:

BLAST of Carg14335 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032287.1	1.9e-86	100.00	hypothetical protein SDJN02_06331, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023543410.1	5.1e-84	98.80	uncharacterized protein LOC111803300 [Cucurbita pepo subsp. pepo]	[more]
KAG6601504.1	1.9e-83	97.63	hypothetical protein SDJN03_06737, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022956516.1	1.5e-80	94.71	uncharacterized protein LOC111458233 [Cucurbita moschata]	[more]
XP_022972292.1	1.9e-78	92.81	uncharacterized protein LOC111470841 [Cucurbita maxima] >XP_022972361.1 uncharac...	[more]

BLAST of Carg14335 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWS9	7.4e-81	94.71	uncharacterized protein LOC111458233 OS=Cucurbita moschata OX=3662 GN=LOC1114582...	[more]
A0A6J1I4F2	9.0e-79	92.81	uncharacterized protein LOC111470841 OS=Cucurbita maxima OX=3661 GN=LOC111470841...	[more]
A0A0A0KTP5	2.8e-56	71.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G601520 PE=4 SV=1	[more]
A0A5A7ST81	3.1e-55	73.18	Hybrid signal transduction histidine kinase L OS=Cucumis melo var. makuwa OX=119...	[more]
E5GBJ1	3.1e-55	73.18	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Carg14335 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23530.1	6.5e-13	37.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G70470.1	8.0e-11	38.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G74055.1	3.2e-04	34.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..165
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..150
None	No IPR available	PANTHER	PTHR33429:SF7	OS02G0708000 PROTEIN	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14335-RA	Carg14335-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane