Carg14333 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14333
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 10130604 .. 10133876 (+)
RNA-Seq ExpressionCarg14333
SyntenyCarg14333
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGGTCTCTCCAATATAATTATAGTTAATTAGGTGTTTCCGGTGAAGGATGCAGTTGGATTTTGAATAGTGGGATTTGCAATCTGCCGCCACCGCTCGGAGGGAAAACAGGGGCTTGCCTTGCAGACTTGGTCAAATGTTAGCCGTCGAGGTAAGTCTATAGCTCCCCTTACTCATCTCCGCCTCTTTACTGCTATTTCACTAGAATTTCTTATTTGCGCTTTGTTTCTTCTAAATTCAGTACTATGTTTGAATGCTATGTATTCGTAATCTTTTTGGACTATCGAGGTTAATGTGAGGTATGTTTGATAATGCTACTACTGATGATCGATTATGCACACGAGGTTCCGTTGTGTAGACCTAGTATCTGTGTGATAATTTTTCGACGGTTGCTTCACTCGGTAGTGGATGCATAGAAGATCCGCTATCCGCTAGATGCGTTTCTTATGGTTTTCCTACTTATTTTCCGTTGTTGTCATGAAGATCGACAAGTTCATTTAGGAGAAGTCCACTATATTCTCTAGATTTGTTCCTTCAAAAAATTAAAATACGATTGGTTCCTCGGAGATGTTCTATGGAGCTAGTTTGGGCAAGAGAAATCTCTTTATAGATTAGTCGGGTGGAACATGGCCAGGAGTGGATCCTGATACTCAGGAATCAAATAAAACTATCCTAGGAGATGTTTGATCCAGTTTCAAATTTGGAAGAAGTGTGTGATAATTTCAGAATTATTAGTCTTAGTTGGTCAGGGTGTTCTTCTGGATCGTAGGTATGATTCTATTTCTCATGGGTGTGATTGACTGATATAACCTAATGAGTTAACAAGTTTTCTTTGGTAACAACATGTCTGTATCTCAATGGGCTGAACTAAAACTTTTACAGAACAGGTTTATTTGCCACAAGTACTAAAATGTAGAAGCATAAGGTCTTGGTGTGTAAAGGGGTTGGAAAATCATGCCAACCACACATGTGAATACACCAATAAATATAGACTTTACACTCCACATGAATCAAAATCATTCTGAATTTTGTTGGTTGATGGCTTCCCAATTTGTAAACAATCAATTGGGGGGACAGTAGGAGTTCTCAACTCTCCAAAAGTTTGCCAGCAGAAGGCTCCATATAAATGATAGAGTTCTTGCAGTGGCTTGAGGTCTATTGCAGTTAGTGATATATCTGTACATGGCAGATTATCACTACAGGCAAAGTGTACTGGCTTTACTGTGTAAGTACCTCTTATTCTTTCGTAGTTTATTCCTGATAGAGCCACAGCCGAAGTTTGGTTTGAGCATTTCTCTTTATCACAGTAGAATTGGTCTATAACTATTGGTATCTTAACCTCAGAAACTTGAATATTTGAGAAGAGGACTCCTTGTACAACACCTAATCCACCCTGCAGATGCACAGTCTGGAATCAATTTTTGAGAGAGCTGGTTTGATCTTACAGTGCATGTTGCTTATAGGTTTCTATCTTCCTTAAGTTTCATGTATAGATAACAAACTAATGCAAAATAAAGCATTTACTTAACTGATCAAGACTAGCACTATTGGTGAGTTAGTTCTAAAGACGAATTGTGCTTGCCTGCCATGTTTTAATTCTGACACCATTCATTGTGTTATGCATAATTACATCCCGAACGGTAATGTTAGAAACACAAGCCTTTGTGTTGTCCTTCCCCAGACTTCCAATGCTGATTCCATGTCCTGGCCCACAATTGATATTGTGTACGTACACATTTGAGCAACCAGTTTGTATTGAAATACAGTCGTCACCTGTGTGTAAGATTAAAGTTAGCTGTCAGTTTTCATCCAATGTATGTCACTGCCAGGATTTTGTTTCTTTATTGGGGGTGACATAGATTGGAATTCTGTAGATGAATTCCATCAGTATGGTCGAAATTACAACAAGAGGCAAAAATAATGATTCTAGGCAAAGTAATTCATACCACAAGAGAGAGTGGTGTTGTGGATTAGCACATCCTTGGAATTCTGTAGATGAATTCCATCAGTATTGGGACTGTCACTTGGAGACGAGACACTAAAATCATGAACCAAGACACCAATGCAATTGTCGAATTTGAGGTGGCATTGAGGACTGTTTTGAATTGTTATGCCAGTGACGGTAACGTTAAAACTTCCATAAAACCTCAGAGCCTGTACAACAAAAGAACAGAGCCGTGTCAAGGGATGTTTCACAAACAATGAAACGAGCTCTATGTCGCTTACAGTTGGCTTGATCCTCGGCATCTTTCCAACAAGCTCACTTCTTGCCTGCCATAGGTTTCAGTATGAATTTAGAGAAAATGCTGCAGAGAATTTATAGATGCCATAATGTGGGGTGTGATAGTCAGTTACCGGGGCTGGTGGCTTTTCTTGTACAGAGCTGTCGAGTGGGATGAGTAGTTTGAATTCATGGTCAATGGTATCATCAAAGGATGAAACTTGCCACCATACTGAACCCCTTCCATCAATAATTCCATTTCCTTGAATGGTGAGTCCCATCAACTTTGTGAACTGTAGCCATTGGAATAGGCCTCTTCCCCAAACTTTGAAAGTTCCGGTCGGCTGCATGATTTTTCCACCATTACCAACTTACTAATATTAATGAACTGAAAAAAAAAAAAAAAAAAAAATACAAACAAGCTAATGTCAAGTCCTCTATTTTCTTTTATAATCAAGGATCCGTAGCACTGATGCAAAATGCCTGGTGTAAAGGTTAGGTACCTGGAATACAATATTGGGTTGGCAGTACGGACCAGAGAAGGAGATGGGGCCTACTAAAAAGACGTACTTTGATGGGACAATGAAGGTTGATGCTGTCACCTTGCAAGTGGCTGTCCATGTATCCTGAAATGCCTGTAATGCACATGATTATTTTACTGTTTCTCTTGTTTACTGTTAGTTTTCTGGATGCTGTCTACCCACCCAATTGTTCTTGCTAAAATCCTTTCCAACTGCTATAACGAGATTCCGCCTTTCCGGGCCCACACCCTCCTTTTACATTCCCCTTCTCCGTAAAATACCATTTCTATTCACGTACATCACTCACACAGTACTCATGTGTAATTGTAAGTTCATAACTATTTTAGTGTGTACCTTGGTGTCATCAGTTTTTCCATCGCCCCTAGCTCCAAAATCGAGCACGTTAAACATGGAAGAACGACTGCCTTTCTGGGGCGGCGGGCTGCGAGAGACATCTGGTTTCGGCATTTTACGAGATGGTGGCTTTGGCTTTGTCTTTGATGCACCACCATGGTGGTTGCCTTTGTGA

mRNA sequence

CTTTTGGTCTCTCCAATATAATTATAGTTAATTAGGTGTTTCCGGTGAAGGATGCAGTTGGATTTTGAATAGTGGGATTTGCAATCTGCCGCCACCGCTCGGAGGGAAAACAGGGGCTTGCCTTGCAGACTTGGTCAAATGTTAGCCGTCGAGTTGGTCAGGGTGTTCTTCTGGATCGTAGTGTGTACCTTGGTGTCATCAGTTTTTCCATCGCCCCTAGCTCCAAAATCGAGCACGTTAAACATGGAAGAACGACTGCCTTTCTGGGGCGGCGGGCTGCGAGAGACATCTGGTTTCGGCATTTTACGAGATGGTGGCTTTGGCTTTGTCTTTGATGCACCACCATGGTGGTTGCCTTTGTGA

Coding sequence (CDS)

ATGTTAGCCGTCGAGTTGGTCAGGGTGTTCTTCTGGATCGTAGTGTGTACCTTGGTGTCATCAGTTTTTCCATCGCCCCTAGCTCCAAAATCGAGCACGTTAAACATGGAAGAACGACTGCCTTTCTGGGGCGGCGGGCTGCGAGAGACATCTGGTTTCGGCATTTTACGAGATGGTGGCTTTGGCTTTGTCTTTGATGCACCACCATGGTGGTTGCCTTTGTGA

Protein sequence

MLAVELVRVFFWIVVCTLVSSVFPSPLAPKSSTLNMEERLPFWGGGLRETSGFGILRDGGFGFVFDAPPWWLPL
Homology
[Close]
BLAST of Carg14333 vs. NCBI nr
Match: KAG7032289.1 (hypothetical protein SDJN02_06333 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 7.4e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MLAVELVRVFFWIVVCTLVSSVFPSPLAPKSSTLNMEERLPFWGGGLRETSGFGILRDGG 60
          MLAVELVRVFFWIVVCTLVSSVFPSPLAPKSSTLNMEERLPFWGGGLRETSGFGILRDGG
Sbjct: 1  MLAVELVRVFFWIVVCTLVSSVFPSPLAPKSSTLNMEERLPFWGGGLRETSGFGILRDGG 60

Query: 61 FGFVFDAPPWWLPL 75
          FGFVFDAPPWWLPL
Sbjct: 61 FGFVFDAPPWWLPL 74

The following BLAST results are available for this feature:
BLAST of Carg14333 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032289.17.4e-35100.00hypothetical protein SDJN02_06333 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg14333 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14333 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14333 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14333-RACarg14333-RAmRNA