Carg14315 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14315
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L27A
Location	Carg_Chr04: 10259264 .. 10259704 (-)
RNA-Seq Expression	Carg14315
Synteny	Carg14315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTCGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGCGCCGGTCATGGTAGAATCGGCAAACACCGAAAGCATCCTGGAGGTCGGGGAAACGCTGGAGGTATGCACCACCATCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTTGGTAAAGTCGGTATGCGTTACTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACGTTGATAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCATTGGTCGATGTCACGCAGTTCGGTTATTTCAAGGTTTTGGGCAAGGGTGTGTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTATCCAAGATCGCCGAGAAGAAGATTAAGGGGGCCGGTGGCGCGGTGGTTCTTACAGCTTAG

mRNA sequence

ATGACGACTCGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGCGCCGGTCATGGTAGAATCGGCAAACACCGAAAGCATCCTGGAGGTCGGGGAAACGCTGGAGGTATGCACCACCATCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTTGGTAAAGTCGGTATGCGTTACTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACGTTGATAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCATTGGTCGATGTCACGCAGTTCGGTTATTTCAAGGTTTTGGGCAAGGGTGTGTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTATCCAAGATCGCCGAGAAGAAGATTAAGGGGGCCGGTGGCGCGGTGGTTCTTACAGCTTAG

Coding sequence (CDS)

ATGACGACTCGATTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGCGCCGGTCATGGTAGAATCGGCAAACACCGAAAGCATCCTGGAGGTCGGGGAAACGCTGGAGGTATGCACCACCATCGGATTCTCTTCGATAAGTATCACCCTGGTTATTTTGGTAAAGTCGGTATGCGTTACTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACGTTGATAAGATCTGGTCCTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCATTGGTCGATGTCACGCAGTTCGGTTATTTCAAGGTTTTGGGCAAGGGTGTGTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTTGTATCCAAGATCGCCGAGAAGAAGATTAAGGGGGCCGGTGGCGCGGTGGTTCTTACAGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPIVVKAKLVSKIAEKKIKGAGGAVVLTA

Homology

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BLAST of Carg14315 vs. NCBI nr
Match: KAG7032307.1 (60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIKGAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 146

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BLAST of Carg14315 vs. NCBI nr
Match: XP_008446169.1 (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022957581.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022966982.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_022984987.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_023523163.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_023541079.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_031741794.1 60S ribosomal protein L27a-3 [Cucumis sativus] >KAA0034278.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >KAG6573714.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012791.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6601534.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KGN51763.1 hypothetical protein Csa_007887 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

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BLAST of Carg14315 vs. NCBI nr
Match: XP_038891740.1 (60S ribosomal protein L27a-3-like [Benincasa hispida])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGG+VVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGSVVLTA 146

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BLAST of Carg14315 vs. NCBI nr
Match: XP_010102488.1 (60S ribosomal protein L27a-3 [Morus notabilis] >XP_010113107.1 60S ribosomal protein L27a-3 [Morus notabilis] >EXB93552.1 hypothetical protein L484_014543 [Morus notabilis] >EXC65297.1 hypothetical protein L484_000089 [Morus notabilis])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 138/146 (94.52%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DK+WS++PQ+VKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

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BLAST of Carg14315 vs. NCBI nr
Match: XP_022151906.1 (60S ribosomal protein L27a-3 [Momordica charantia])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKG LPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGALPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSK AEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKNAEKKIKEAGGAVVLTA 146

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BLAST of Carg14315 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-71
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKL+SK AEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

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BLAST of Carg14315 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-69
Identity = 126/146 (86.30%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKL+SK AEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

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BLAST of Carg14315 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-50
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DK+W+L+ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLVSKIAEKKIKGAGGAVVLTA 147
           QP++VKAK  S+ AE+KIKG GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Carg14315 vs. ExPASy Swiss-Prot
Match: P14115 (60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-50
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DK+W+L+ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLVSKIAEKKIKGAGGAVVLTA 147
           QP++VKAK  S+ AE+KIKG GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Carg14315 vs. ExPASy Swiss-Prot
Match: P18445 (60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-50
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DK+W+L+ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLVSKIAEKKIKGAGGAVVLTA 147
           QP++VKAK  S+ AE+KIKG GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Carg14315 vs. ExPASy TrEMBL
Match: A0A6J1J3M5 (60S ribosomal protein L27a-3 OS=Cucurbita maxima OX=3661 GN=LOC111483090 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 4.9e-76
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg14315 vs. ExPASy TrEMBL
Match: A0A6J1GZL8 (60S ribosomal protein L27a-3 OS=Cucurbita moschata OX=3662 GN=LOC111458930 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 4.9e-76
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg14315 vs. ExPASy TrEMBL
Match: A0A5D3CUR0 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001380 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 4.9e-76
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg14315 vs. ExPASy TrEMBL
Match: A0A0A0KQ56 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598710 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 4.9e-76
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg14315 vs. ExPASy TrEMBL
Match: A0A1S3BF89 (60S ribosomal protein L27a-3 OS=Cucumis melo OX=3656 GN=LOC103488974 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 4.9e-76
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg14315 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 269.2 bits (687), Expect = 1.9e-72
Identity = 128/146 (87.67%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKL+SK AEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg14315 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 263.8 bits (673), Expect = 7.9e-71
Identity = 126/146 (86.30%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 147
           VVKAKL+SK AEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg14315 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-29
Identity = 78/145 (53.79%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYC IVN+DK+WS+                          VLGKG LPEN+P+
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLVSKIAEKKIKGAGGAVVLT 146
           VVKAKLVS   EKKIK AG AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

The following BLAST results are available for this feature:

BLAST of Carg14315 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032307.1	1.2e-76	100.00	60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_008446169.1	1.0e-75	99.32	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribos...	[more]
XP_038891740.1	2.2e-75	98.63	60S ribosomal protein L27a-3-like [Benincasa hispida]	[more]
XP_010102488.1	1.9e-74	94.52	60S ribosomal protein L27a-3 [Morus notabilis] >XP_010113107.1 60S ribosomal pro...	[more]
XP_022151906.1	1.9e-74	97.95	60S ribosomal protein L27a-3 [Momordica charantia]	[more]

BLAST of Carg14315 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49637	2.7e-71	87.67	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=...	[more]
Q9LR33	1.1e-69	86.30	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=...	[more]
Q56K03	3.4e-50	64.43	60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3	[more]
P14115	3.4e-50	64.43	60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5	[more]
P18445	3.4e-50	64.43	60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3	[more]

BLAST of Carg14315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3M5	4.9e-76	99.32	60S ribosomal protein L27a-3 OS=Cucurbita maxima OX=3661 GN=LOC111483090 PE=3 SV...	[more]
A0A6J1GZL8	4.9e-76	99.32	60S ribosomal protein L27a-3 OS=Cucurbita moschata OX=3662 GN=LOC111458930 PE=3 ...	[more]
A0A5D3CUR0	4.9e-76	99.32	60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KQ56	4.9e-76	99.32	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A1S3BF89	4.9e-76	99.32	60S ribosomal protein L27a-3 OS=Cucumis melo OX=3656 GN=LOC103488974 PE=3 SV=1	[more]

BLAST of Carg14315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70600.1	1.9e-72	87.67	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	7.9e-71	86.30	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	1.5e-29	53.79	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 e-value: 1.1E-19 score: 71.4
None	No IPR available	GENE3D	3.100.10.10		coord: 58..146 e-value: 4.1E-39 score: 134.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11721:SF21	60S RIBOSOMAL PROTEIN L27A-3	coord: 1..146
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 1..145 score: 11.839419
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 6..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14315-RA	Carg14315-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome