Carg14277 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14277
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 10594035 .. 10595066 (+)
RNA-Seq Expression	Carg14277
Synteny	Carg14277

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGAAGAGATTCAAACGAGTAACCCTAAGAATTGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGGAAGAGATTCTCAAGAAATGTAAGCTCTACTTCTCATTTTTGTTTGGTTTATGTTCATGATTGGGTAGCATTGACGCGCGATTCCTCCCTTTTCTGTATTCGATCTTTCGTTGTGTGTGCATTACAATCTAAAGCCTTCAGAAATAGATTCTCAAGAGATGACTGTTTATACTAAATTGATGAGGGAGATCCATCAGTTCTTTAATGATTAAATTATTAAAGATCGCCTTATTCTGCAGCCTGCTTTTGACATTACATCTGATCTTAGACTTCTGGTAACTTATTCTTAGGATTTGAGTTACTTCCAGATCTGGAGCTTGATTATGTTGAGTAATGCGTACTGTTGAACTATGTTGGTTTTGGTTCAGATATTCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGGTAAAACATGGATACAACTTTGCATTTCCAAACAAGTTTTTTATGAATATTTTATTTTCATCCAGGTTTTCTATGTTGGACGTCTGAAGTTTGCTATCACTGTTTATCAATTAATAGCTGATTGTTTTGATACTATGAAAAGAAAGAAAGAAAGGGAAAAATGAGCGCTGGATGCTCCATTGTAAAAAAAAGACATCAACATATAACGAAGCGAAACCACTACGATCATCCTGGCCTTTAGTTTGTACGTGATGTGTGTTTATTCTGGAGTAGGAATAACAATAACCGTCCATCGGTATTCTATTGCTTACAAGTGAAGAATTACATTTGGTTTAGGGTATCGTGCACCTACACTTGCTTAGTTTATACCATGAGATCATTTTTTAGTTCTTAATTCTTATCAGAAAAACAAAAGGGGGAAAAGGACTTTTGAACATTCGTTGTTCTTGAGCTTCTCTTTGGATATCTGACAGGAGAAAAAGAAACCAGTGCACAATGGGGGACTCCCTTGGGGATGA

mRNA sequence

ATGAAGAGGAAGAGATTCAAACGAGTAACCCTAAGAATTGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGGAAGAGATTCTCAAGAAATATATTCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGGAGAAAAAGAAACCAGTGCACAATGGGGGACTCCCTTGGGGATGA

Coding sequence (CDS)

ATGAAGAGGAAGAGATTCAAACGAGTAACCCTAAGAATTGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGGAAGAGATTCTCAAGAAATATATTCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGGAGAAAAAGAAACCAGTGCACAATGGGGGACTCCCTTGGGGATGA

Protein sequence

MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYIQSPNPGFLEANQEKKKPVHNGGLPWG

Homology

[Close]

BLAST of Carg14277 vs. NCBI nr
Match: KAG7032344.1 (hypothetical protein SDJN02_06389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYIQSPNPGFLEANQEKKKP 60
          MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYIQSPNPGFLEANQEKKKP
Sbjct: 1  MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYIQSPNPGFLEANQEKKKP 60

Query: 61 VHNGGLPWG 70
          VHNGGLPWG
Sbjct: 61 VHNGGLPWG 69

[Close]

BLAST of Carg14277 vs. NCBI nr
Match: KAG6601579.1 (hypothetical protein SDJN03_06812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1  MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYIQSPNPGF 51
          MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKY     P F
Sbjct: 1  MKRKRFKRVTLRIGSVMEDEIGEEFERSGFTFDEEEEILKKYRLILQPAF 50

[Close]

BLAST of Carg14277 vs. NCBI nr
Match: KAE8652527.1 (hypothetical protein Csa_013070, partial [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-04
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 13 IGSVMEDEIGEEFERSGFTFDEEEEILKKYI 44
          +GS ME+EIGEEF+RSGFTFDEEEEILKK +
Sbjct: 23 LGSAMEEEIGEEFKRSGFTFDEEEEILKKCV 53

The following BLAST results are available for this feature:

BLAST of Carg14277 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032344.1	1.8e-30	100.00	hypothetical protein SDJN02_06389, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601579.1	3.3e-13	88.00	hypothetical protein SDJN03_06812, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652527.1	4.8e-04	80.65	hypothetical protein Csa_013070, partial [Cucumis sativus]	[more]

BLAST of Carg14277 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14277 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14277 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14277-RA	Carg14277-RA	mRNA