Carg14228 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14228
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L29, chloroplastic-like
Location	Carg_Chr04: 4460021 .. 4461912 (+)
RNA-Seq Expression	Carg14228
Synteny	Carg14228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGGTAATTTTCTCCCTTATTGATAGATTCTTAATCAACTTTGAGTTCTATTATAATGTGGCTTTTTTGTTCGTCTTTAATTTATAATCTATGCGAAGTATATTTTAAGTCGTACAGTCTCCCATTCTCCACATTTCTGCTTATTTTGTGCTAAATTTAATGGTCGGCTTGAAATTTTGGCTCATTTGTTTCCAATGGGGTTTTGTAGCTGTTGAATCTAAGATTATTGCCTATTATTTGCCGCCAAAATGAAAGACGAGTAGCAAATTAACGTATGAAAAGTAAAAAGAAAAAAGAACCTCGAACGATATGTTTCACCATGTTGGGAAAAGCTTAGAGAAGCTGCATTTGAAGGAAATAGAAAAACCAATGCAATTAGGGGGCCAGTTAGAGCTGCTCTGCAACTTAGAAATTCAATTAGAATCAAGAAAGGTAATCGAAATTGGGATTTCTGGGCATTAAAAACTTCGCATTCGACTAGTATTAACTCCAAATTTTGTATACGTTTAGCACCTGTCTTCAAAAAAACTCTTCAATGTCTTCCTGCTAACATTTTATCTAAGATTCCCAAAATTCCGGAAGCATGAATGAGCCTATAAATGTGGAAATGACAATTCCATAGAAGATGTTATTTGATAAACTAAACCTATTCTGATCACGAAGCATCACAATGTTGAATGTATAGAGAGAGCCATTTGCATTTGAACAATATGTAGCCTTCTCATGACTTTTGTATCAAAGTTCTTCCTGCTTAGTGCATTACATGGATGTCGGAATTGTTTGCTGGGCCTCTCACTGTAATATGCTTGTTCTATTTGTAAGACTTGCCATTCTCATAGTTTCGTCGTGACGAGTCTGAGGATTTAGGAAGCGAACTCTTTTCATTTATAGTTGAATTCCACACCTTCATGATAAGTTTAGATGCTCATAGTTACCCTCTTAAGGGTTGGTTCTGGATTCCAACTCGACAACTTACCGATTAAAATCCTTCCTTACCGTCTAGCCTGCTCGAAAATTGGTAGTGTGGATCATGAATATGGGAGTGGGGCTTGATGATCAATATAGTATTGCAGAGATCGATTAATATATTTGCTGATGCAGGACAGTTTGGAAGTTTATATAGTATATGGGTCCTGTCTCCTTCTTGTTATTCTTTATCTCCACACACTTTCGGTTTTGCGACATTGTCGCTATACATCCATTTTTCTTCTTTTTCTCCTCTTTCTCCAAGTTATCAATCTTTTAACCTTGAACTCGTGGTTGGAATATATGCCTTAACTAATTGAGCTATGCTTAATTTGGGAGCTATACATCGAATATTTGGACTTAGCCCAACAATTTTGGTTTTGTTTCTCTTATACATCCATGAAACTTGGAGTTTTGTGCAGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

mRNA sequence

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA

Homology

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BLAST of Carg14228 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg14228 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 298.9 bits (764), Expect = 2.7e-77
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M+NLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg14228 vs. NCBI nr
Match: XP_023531622.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg14228 vs. NCBI nr
Match: XP_038903244.1 (50S ribosomal protein L29, chloroplastic [Benincasa hispida])

HSP 1 Score: 278.5 bits (711), Expect = 3.8e-71
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           MINLSIASPS+VS P K L+STSKSSFNG QIRFPFSFRVPPKTA TGGRNSSVVMMAKR
Sbjct: 1   MINLSIASPSTVSIPLKVLTSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR K+TEEI EEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKSTEEIKEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg14228 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.1 bits (710), Expect = 5.0e-71
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFSFRVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of Carg14228 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.8e-46
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVP-PKTASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of Carg14228 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.1e-39
Identity = 95/148 (64.19%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 23  SKSSFNGRQ---IRFPFSFRVPPKTASTGGRNSSVVMMAKREEELKEIRTKTTEEINEEV 82
           +KSSF+G +   +    S R+  +T       SSVV+M K+E+ELKE+RTKT E++NEE+
Sbjct: 26  TKSSFHGLRLPSVNLSSSLRLRVQTPP-----SSVVVMVKKEDELKELRTKTNEQLNEEI 85

Query: 83  IDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKW 142
           + LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ W
Sbjct: 86  LQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAW 145

Query: 143 KRSIVVRPPPSLKKLREEEAAAEEAEKS 168
           KRSIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 146 KRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]

BLAST of Carg14228 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 80/108 (74.07%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 50  RNSSVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRK 109
           R +++V MAKRE+EL+EIR  TTE++ EEV+DLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]

BLAST of Carg14228 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 65  KEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]

BLAST of Carg14228 vs. ExPASy Swiss-Prot
Match: B8HMR2 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.2e-04
Identity = 20/63 (31.75%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 63  ELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 122
           ++K++   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++A+++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 123 IEE 126
           + +
Sbjct: 65  LTQ 67

[Close]

BLAST of Carg14228 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg14228 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M+NLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg14228 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 154/168 (91.67%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           MINLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFSFRVPPK A  GGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of Carg14228 vs. ExPASy TrEMBL
Match: A0A0A0KVL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 153/170 (90.00%), Postives = 164/170 (96.47%), Query Frame = 0


Query: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           MINLSIAS PS++  PSKFL+STSKSSFN  QIRFPFSFR+PPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of Carg14228 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.3e-68
Identity = 148/164 (90.24%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEA 165
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 164

[Close]

BLAST of Carg14228 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-47
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVP-PKTASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:

BLAST of Carg14228 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941582.1	1.2e-77	100.00	50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1...	[more]
XP_022977189.1	2.7e-77	99.40	50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]	[more]
XP_023531622.1	6.1e-77	99.40	50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038903244.1	3.8e-71	92.86	50S ribosomal protein L29, chloroplastic [Benincasa hispida]	[more]
KAG6577307.1	5.0e-71	92.26	50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Carg14228 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJP3	5.8e-46	67.26	50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P82248	3.1e-39	64.19	50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P...	[more]
Q9SWI6	2.7e-35	74.07	50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1	[more]
Q49ZG0	2.5e-04	48.39	50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (...	[more]
B8HMR2	7.2e-04	31.75	50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of Carg14228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMW5	6.0e-78	100.00	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IQR3	1.3e-77	99.40	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JCM6	1.2e-70	91.67	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0KVL7	1.9e-68	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1	[more]
A0A6J1EMX4	3.3e-68	90.24	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Carg14228 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65220.1	4.1e-47	67.26	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..168
None	No IPR available	PANTHER	PTHR10916	60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29	coord: 1..168
None	No IPR available	PANTHER	PTHR10916:SF1	SUBFAMILY NOT NAMED	coord: 1..168
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 65..121 e-value: 7.70133E-16 score: 65.9718
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 65..121 e-value: 8.9E-14 score: 51.2
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 66..121 e-value: 3.1E-16 score: 57.1
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 62..121 score: 13.550307
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 63..126 e-value: 1.3E-14 score: 55.9
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 64..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14228-RA	Carg14228-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome