Carg14221 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14221
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 4427261 .. 4429513 (-)
RNA-Seq ExpressionCarg14221
SyntenyCarg14221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGGTATGATTCCAAGCCCAAGGCTATGAAATTGAATTCAAGTTTTTGGGGTCGTAGGAAGTAATTGTTGTTTATAAGTTTATTTATTATTTATTATTTATTATTTTTTGTTGGCTGTGAAGATGTGAATTGTAGCTTTAGCTGCTTTAGATGTCACCTCTATTTGTTGGAGCAGGGATTATGTCAGCATTTGACTGCAAGTTCTATTTTGTGATGTTATAGTTTTCAGTATTTGTTTGTCTCTGAATGCTAGTATGCCCAAGTTTCTTACAATAGTATTCCATTTTCTGAACATGCACAGCTTTGCATTTAGATTCATCTAAAAGATCAAGGAAGATGTACTCTTCTCCACTTTTACTTCAATTTCTGCACTAATTAGTCGTAAGGCCCTCATAGTTGAGTTGAGTGGCAGTTTCGAAGCTAGCCAACACATTTGAGGCTGAGGCTGAGGGTATCTTGTTGTTATATGTATTTGTGCACACACTTACCTTCTGGAAAAAATACTGTTGAGATTTTCAAACTAGTCATATTTTATGAGGGATGAAATTTGTTAGATTTCATTTTGTTTTTCAATCATTGGAGTTTTTGAGAATGAGTTTCTAGTTCTGAATTTGTTCTTATAAACATTCCTCTAGGTCATGACGATGAACTATACGAGAGATATATTAGTGTCTGAATCAAATTTTGAGACTGATTTGAGCCTAAGTGTTGAGATATAATATTTGGAAAATATATTATTCTAATTAGTTATAGAATATATCTTAGATATTGTTTATCAGTTAATATTCTTTATTTATGATTTGATTAGTAGTATATTTTATTTTATTCTCAATATTTAATTAATTTATATTTCCTTATCGGGAGGTATTAGTTGGTAGCTTGGATTCTATTGAAACATTATGAATATCAATGAGAATACACACCTTCAATTACAATTCTATTTCTCATTATTAACATGGTATCAGAACACCGATCTTGGGATTCTTAAATATCAAAATTTGCTAGGGTTTGGTAAGCCAAACTCTAACTCAATCAGTAAAGCCATTAAAAATGAGAAATAGAATTGGGATCGAATGTGGGTATTTTAATGGATATTCATAACATTTAAATAGGATACATGGGATCAAAGGTGGGTATTTTGATGGATATTCATAACATTTAAATAAGGTGGGTATTTTAATGGATATTCATAACATTTAAATAGGATACATGGGATCAAAGGTGGGTATTATGATGGATATTCATAACATTTAAATAGAATACAAGCTACTAACTAGGAAAATATAAACTAATTAAATATTAAGAATAAAATAAAATATACTATTAATCAAATCAGGAAGTTAATAATGAAGTTAAGAATATGAACTGATTACGAATATATAAGATATATTCCATAGCTAATTATTATAATATATTCTCTAAATATTATATCTGACCATCAATTTGTTGAAATCGAAGGTACTTTCTTTGTTCAACTTAATGACTTCTTTGAATTGAAGATCAATGCATAACTGTTTTTTTCCTTGAAAATATCATGCAGAATGGTCCGATTCATGTAAAGTTCATTGTAAACAATTAGGGATGCGTCACACAACCCACTAAGGTAAACCATTGCTTTTACAAAACTCTTATCATTTTATTTACTCGTCAAACTTTAACAAAAATGGTTAATGTTCACTTTTAATGGTTTCAAATTATCCCATATCTCATTGGTTTGATATTATTGCTCATATTTCCTTTGTTATGGAGAAGATTTTGATTCATAACTATGTTGTGAAAATTCAGATGGTAATGGAGGACTGATAGAGATAATAAAGTTTGATGTCAAGGAATCCAACTCTGGTTGCTACTTTCAATACTAAACTAATACTAAACTAGAATGAAGGTTAAAGTTGAAAGGAGTTCATGAGAAAGGAATTAAATTACATTTTCTGTTTTATGACTGTTTTAGGTAGTTAGGAATGTTCTTTATTTTATTTTTAATTAAAGCTTTCATTGAGATCAAGTGAAAGACGAAGAGGAACACTCCATCTCAAGAGGAACCCAATTGACCTAAAAAGGTGCTCCAATCAAGCAAAATAA

mRNA sequence

ATGTTGGCAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGCTTTCATTGAGATCAAGTGAAAGACGAAGAGGAACACTCCATCTCAAGAGGAACCCAATTGACCTAAAAAGGTGCTCCAATCAAGCAAAATAA

Coding sequence (CDS)

ATGTTGGCAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGCTTTCATTGAGATCAAGTGAAAGACGAAGAGGAACACTCCATCTCAAGAGGAACCCAATTGACCTAAAAAGGTGCTCCAATCAAGCAAAATAA

Protein sequence

MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLSLRSSERRRGTLHLKRNPIDLKRCSNQAK
Homology
[Close]
BLAST of Carg14221 vs. NCBI nr
Match: KAG7031288.1 (hypothetical protein SDJN02_05328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.2 bits (430), Expect = 7.7e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLS 60
          MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLS
Sbjct: 1  MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLS 60

Query: 61 LRSSERRRGTLHLKRNPIDLKRCSNQAK 89
          LRSSERRRGTLHLKRNPIDLKRCSNQAK
Sbjct: 61 LRSSERRRGTLHLKRNPIDLKRCSNQAK 88

[Close]
BLAST of Carg14221 vs. NCBI nr
Match: KAG6600651.1 (hypothetical protein SDJN03_05884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 4.7e-20
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0 

Query: 4  EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLSLRS 63
          EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRIL     
Sbjct: 5  EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRIL----- 64

Query: 64 SERRRGTLHLK 75
               G +H+K
Sbjct: 65 ----NGPIHVK 66

[Close]
BLAST of Carg14221 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1   MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILL 60
           +LAEE RTTNSY+IE  SDNREGKNKAV  D VIA   E Q VLSLR VGFSHLL ILL
Sbjct: 193 VLAEESRTTNSYVIEFCSDNREGKNKAVVLDEVIAWATEKQFVLSLRLVGFSHLLGILL 251

[Close]
BLAST of Carg14221 vs. NCBI nr
Match: KAG7011932.1 (hypothetical protein SDJN02_26840, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0 

Query: 1   MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLS 60
           +LAEE RT NSY+ EI S NREGKN AVA D VIA   E QLVLSLRPVGFSHLL IL+ 
Sbjct: 87  VLAEESRTMNSYVSEICSSNREGKNNAVALDEVIAWTTEKQLVLSLRPVGFSHLLGILME 146

Query: 61  LRSSE 66
           + + +
Sbjct: 147 VENMD 151

[Close]
BLAST of Carg14221 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 5.2e-11
Identity = 43/59 (72.88%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1   MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILL 60
           +LAEE RTTNSY+IE  SDNREGKNKAV  D VIA   E Q VLSLR VGFSHLL IL+
Sbjct: 193 VLAEESRTTNSYVIEFCSDNREGKNKAVVLDEVIAWATEKQFVLSLRLVGFSHLLGILV 251

[Close]
BLAST of Carg14221 vs. ExPASy TrEMBL
Match: A0A6J1ING1 (uncharacterized protein LOC111478006 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-06
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 4   EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHL 55
           EER+TTNS +IEIG+DN EGKN+ VA D VIA  KE Q VLSLR  G  H+
Sbjct: 179 EERKTTNSDVIEIGADNGEGKNETVALDEVIAWAKEKQFVLSLRLDGTIHV 229

[Close]
BLAST of Carg14221 vs. ExPASy TrEMBL
Match: A0A6J1IL14 (uncharacterized protein LOC111478006 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 4   EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPV 50
           EER+TTNS +IEIG+DN EGKN+ VA D VIA  KE Q VLSLR V
Sbjct: 179 EERKTTNSDVIEIGADNGEGKNETVALDEVIAWAKEKQFVLSLRLV 224

The following BLAST results are available for this feature:
BLAST of Carg14221 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031288.17.7e-39100.00hypothetical protein SDJN02_05328, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600651.14.7e-2081.69hypothetical protein SDJN03_05884, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030840.12.3e-1174.58hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7011932.12.3e-1166.15hypothetical protein SDJN02_26840, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600176.15.2e-1172.88hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg14221 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ING14.2e-0664.71uncharacterized protein LOC111478006 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IL141.2e-0569.57uncharacterized protein LOC111478006 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Carg14221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14221-RACarg14221-RAmRNA