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Carg14152 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCAATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGGTCAGCTCTCTCTCTCTCTCTCTCTCTCTGATAAATTCTTCTCTATCTTTCCATTTCTCTCCTCCCTCTGTTCTCATCTCTCAATCTCACTCTCAGTTTTGGTTTTATATTCGGTCTTTCTTTCTCTTTTCTTTTAGTTGCATTGTTTCGTCCTTCCTGTTGTTTTTTTCGTGCAGTTTCCCTAGTAGTGTGTTCTTAAACTATTGCATCTGACTGAGGAATTATTACTTGAATGTTTTATGATGAGTACATGTAATATCTTGTTTGCCTCTTAGGATGAAAATAGTTCAATTTTTCATTTCCTGAGTTTATCAATGCTCAACAAGCACTGGAGACCTTGAGTCAAGGGTTAATATTCTCATTCTGTGTTTTCTCGAACAATTTAAGCCTCGACTATAGTCTCTCTGGAACATGATGTTCTTTAGGGCAGCTTTAGGCACATTCTGTTTTATGAGATTATGCTGATACGGTTGTATGTGCTTATGGTCATATGTTTTCCTGTGTTTTCAGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGTATTTTGTTCTTTGGTATTTGCATATTTGTTTATGCGACATCTTAGTCTTCCATTTGTTAATTCTAACATACTAATGCCTTTCATATCCTCCCTCTTTTGTCTTCAATTTCAGCCGACCAATGGAGGAAGATGTAAGTTTCTTCAGTCTTTTGTGCTTTCGCTTTCAGTACTTTTATCCAATACATGTTGCCAAATGGTTCGACCTTTTTCTTATGCGCAAGTATGTTTGAATCATGTCTTACTCTTGAGTCGTTATAAAAGCTTTTCATTGTATAGTATCTTCGGCTCCTGTTCCTTTTCATTGACACAACTCTTTTGAGTTGGATGAAAATTTTATCCTTTGTACTGAAAAATTATGATTTCTCTTTCTAATAATCATGATCCTGTAGGCCAGTTAGTACTTACCTCTGCTAATGCCCTTGAGGCAACTATTGAACTCTCTTTAAATTTATTAAAATTGGATAACATTTTAGCATGGTATTTTTTTTTGTCTTTAGTTAAAGGTCAGCTTTATGTCAATTTTTAATTTTACTAAATTCTGCTGATTGAATGATATTTTGATATATTGGGAGTTCGATGCTTGAAAACTCGATATATAATTAAGGTTTGGAAGTTATGATTTTTAGTTATCTATGTCAGAAACCCTGTGAAAAGTTCACATGGCTTTTGTTGTTTAGACTAGGAAGGTTGGATATTTGTAATAACTTAAAAAAAAGGAAAAGATCTCATTTTCTATGCCCCTTGGTATTATGTGAATAATGTTGTATTCTTGAGTCATTTATTTCTCCATCCCGAGTTTGCTGATGCGCTTTAGTTTTGGTTTAGTGTACACTATCTTGAATTTCTCTAGTAGAGAAATTCCTTGACAGTTGGTCTTCAAAACGGGTTTTTATTTTTTACTTACTATGTTGGAAATTCCTTGGTAGTAGGTCTTTAAAATGGCGTTTTATTTTTTTTACTTCTTTTGGGTGCTATAGTTTGGCTGGCAAGAAACTGTATGATTTTTTAAGACGTGTTTTTATACCTTTTGGAGTAAAACTGATGATCTTTAGATTCAGTGCCGTTTTTTCTTTCAACATTGTTTCTATGGTTGATTATTGTGGTATTTTTCCCTTCCCATTTGATGATTGTTACCAAGTTACTCTTTCGTAAGCTATTTATAAAATGGCTTTATTTATAATTTTTTAAAAGTGATAACTACGACAATTTCATGAAGCTCATTTCTTTCAAGGAACCTTTTTTTTTAAATCTTTCCAGGCCCCCTTCCCTGTTGTTCCTTTTGGGGGGGGGTGGGGGGGTTGGTGTTATACTGCAAGATCTTTGGACTTCTTCAATTTTGTTCTGTTTATTACTTGAAACTTTACTGAAGTGCTACTAGAACGTCATTAGGAAGTACTTACTTCGAATCCTTTGCAGACTAACAAGAATGAAGAAGAGGAATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTATGCTTTGTTTGTGTGTGTTAAAGAGTTGTGCCTTGTAATTCGCAGGTGAACTGTTTAGGTAAAAACCCTCATGTTTTGGACCCCCTCGACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTCTTGATGTGTGCTTACTTTTTTCCTTGCTTTGTATTGTAGACTCGTGAGTTACGTGTCATGTATAATTACAATGTCTAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCC ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCAATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGAAGTACTTACTTCGAATCCTTTGCAGACTAACAAGAATGAAGAAGAGGAATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCC ATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCC MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP Homology
BLAST of Carg14152 vs. NCBI nr
Match: XP_022942850.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 167.2 bits (422), Expect = 6.0e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. NCBI nr
Match: KAG7031220.1 (putative small nuclear ribonucleoprotein Sm D2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 167.2 bits (422), Expect = 6.0e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. NCBI nr
Match: KAG6600580.1 (putative small nuclear ribonucleoprotein Sm D2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 167.2 bits (422), Expect = 6.0e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. NCBI nr
Match: CAA2614514.1 (unnamed protein product [Spirodela intermedia] >CAA7388840.1 unnamed protein product [Spirodela intermedia]) HSP 1 Score: 167.2 bits (422), Expect = 6.0e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. NCBI nr
Match: XP_014494508.1 (small nuclear ribonucleoprotein Sm D2 [Vigna radiata var. radiata]) HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38 Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37 Identity = 71/79 (89.87%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37 Identity = 71/79 (89.87%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37 Identity = 71/79 (89.87%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 4.1e-37 Identity = 71/79 (89.87%), Postives = 78/79 (98.73%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy Swiss-Prot
Match: Q54NC5 (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44689 GN=snrpd2 PE=3 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 1.3e-35 Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy TrEMBL
Match: A0A7I8JY04 (Small nuclear ribonucleoprotein Sm D2 OS=Spirodela intermedia OX=51605 GN=SI7747_01000894 PE=3 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 2.9e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy TrEMBL
Match: A0A6J1FX13 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111447757 PE=3 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 2.9e-38 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy TrEMBL
Match: A0A5N5KBI5 (Small nuclear ribonucleoprotein Sm D2 OS=Salix brachista OX=2182728 GN=DKX38_003252 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy TrEMBL
Match: A0A6A4QKF7 (Small nuclear ribonucleoprotein Sm D2 OS=Lupinus albus OX=3870 GN=Lal_00016389 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. ExPASy TrEMBL
Match: A0A0B2Q033 (Small nuclear ribonucleoprotein Sm D2 OS=Glycine soja OX=3848 GN=D0Y65_054695 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0
BLAST of Carg14152 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg14152 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg14152 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg14152 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0
BLAST of Carg14152 vs. TAIR 10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40 Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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