Carg14126 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14126
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIE subunit beta
Location	Carg_Chr04: 3914462 .. 3917365 (+)
RNA-Seq Expression	Carg14126
Synteny	Carg14126

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCAAACGTCGACCCCCGACCCGACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTTGCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAGAGGTGTCGGACTACCTTGACTGGCATTGCTGCATCCAAGTCTACTCCTAAGTTTACGCCTCCACCGCCTTCTTCCATTGCAAGACCTCCGCCTCCTGCTGTAAATTTTTCAAATGATACTGACAGACTTCCAACATATTAACAGCATAAGAAAATCCCCAGTTGGGGCTCAGTCAAGAGGGTTATCGACCTGCTGCTGGAGGTTTACATCCTTTTCCTCTTCTGTTTTGTTCTTTTTATTTCGATTGTTTTACGAGGTTTCTTTTGTTTGATCGAAGTCTTCTATGGAAGGCTATGTAGGATAGGATGCAATTCACCACGTATTGATTCGAAATGTTCACAGAGCTTCCTTACTTTCACTTAGTTCTTGTTGTTAATTTGTCCAAGTTGTACCGACTTCAATATGTTCTTTTTAATGGATGAATTTTTAACCTGGAGATTTGGCTGACCTCATAGAAAGAGGAACTCTTCAGCTAGTGGGACTTGTGATTGTCATTAGGATCCTCTTCACTACTTTGTGTTCGTGAATAAATGTGTTTTTACATGTAAATTACATATGTTAATCCGCTCACCCCTCTTTCTCATGGTTTTGAATTGACTGTTAAAGCTTAAAAAAAATTCTTTCCTGAAATGCATTTTCTCTTTTACTGTTTGTGAATTGGAACCTTAAGGGTATGTTTCAATCTTTCAGCATGCTTATTTGCATGTTAACAGACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAAAGCCGTTTTTGATAGTCTACGGAATAACCTAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGGTAATTATATTCTCAAACACTTGTGTAATTTGCACGAATCTGTACTTGTTTGGTTTAAATGTTTGAACCTTCAATGTTGTATGACATTTTTTTTCCTTTCTCTTTTTGCTGTTTTTCGTCTATTCAGTCCAAGCACGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTTATTGATCTCAAGGACTCTTATCCAAACGTTATGGAAGATATGTAAGTATGTATATTTGAGATTTTTTTTTTTTTTTTTTTAATGCCTTTTCTGTTCTGAATGAAAAAATGTGCAATATATTGATATATTTGAGATTTATGTTTCTTCAGAAGTTAAATTTTTTTATTCCATGATTGTTGATCATCATTTTTTGGCCTCCCAAACTCTATGAAGTTTTGTTTCAACGGAACTGGCCCTTATATTATTACAACTTCTTTGATTGTATAATGAATTGAAAGCATGTGGCTGTACTTTTCACTCGAAACCGAGTATAAACTTATATTTTCCAGATGATATTATGAGGTCTACATGACAGTCTATTACCTTTACTTTTCAGCTTACAATGTATTTCCCCCTCTTGTTTAGGCCCTAAAAGCCTCAGGCCAGCTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATGGCAAACCCAAATGACCCAAGAATTCAAATCAAGGTAGATGACGATCTGAAGCAACTTTTTCGGGAGTTGAATTACCTCGCGACATGCTGCTGAAACCTGCAACCAACACTGCAAAGAGGCGAGCCAATGCACAACACATAAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACTAAGCTCACCAATGCTCATCTTCCCAAGCTCTTCAAAAATTAGAGAACCCTATGCTTATAAGGTTATCTGTAGGGTGAGATGCAACAATATATAGTTATGTCAATGGACTCTGTAGATAGCCTTTTCCATCCCTTCTGTTTGATGTATTGCTGTTTTATATTTTACTTTCTTTCAATGATATCACCATAGAATTAAGTGTCCCTATGGCTACTTTAGTGTATGTCTCTGCTTTTACTTCAATTAACAGTGGAAATATAAGAGTTAAGTTCAATCAAACTAGATATATGACATGAGAAGTTTATTACAATGTGAACTTTTACATTCTGTTATTTCAAGTTTATTTTATTTCAGAATAGTTGATATGTGCATGGCTTCTATTTCCTGGACAAACCCACATTTCTGCTACGGTAGAGCACAGCCCAAGTACCAATTTAGGGAAGAGAGAAGGTTCAAAGCCTTTCAAATTGAAATTTCCAATCTATTTCTATGATGCATTGCCCAAGATTTTTAAATTTACATGGTTTTTCTTCAATTGTTCGTAGAAAGGTTTTTGAACAGGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATTCCGCGCAGTATCAAATTAGGGGCATTGTTGCCGAGGTGGGTTTCTGGCCTTCTGGTTTCTATAAATCTATTAAACGTTCAAAATTTTGTGTGAAGTTTGTTTTCATTTTATTTCTGCAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGATTGTTCTTCTACACATGGTGCACGCCAAAAAAGTCTCTCCTGCACCGAATTCCTATATTTCTTTTTATGTAACTCCCCAAACGATGTTTCTGCAGATGGATTATGATATTTCAACGAATTCTTAGTTCCTCAGAGACCCCTTTTCTAGAACAAGTAAAAGGGCCTGTTCTGGGAGTGATTTTAAAATGGTTCTAATAGTTTTTGTCATACTGAAAATCACTCCAAAAGGGATATTTAATCCTTCAAATTATTTGAACG

mRNA sequence

TATCAAACGTCGACCCCCGACCCGACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTTGCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAGAGGTGTCGGACTACCTTGACTGGCATTGCTGCATCCAAGTCTACTCCTAAGTTTACGCCTCCACCGCCTTCTTCCATTGCAAGACCTCCGCCTCCTGCTACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAAAGCCGTTTTTGATAGTCTACGGAATAACCTAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCACGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTTATTGATCTCAAGGACTCTTATCCAAACGTTATGGAAGATATGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATTCCGCGCAGTATCAAATTAGGGGCATTGTTGCCGAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGATTGTTCTTCTACACATGGTGCACGCCAAAAAAGTCTCTCCTGCACCGAATTCCTATATTTCTTTTTATGTAACTCCCCAAACGATGTTTCTGCAGATGGATTATGATATTTCAACGAATTCTTAGTTCCTCAGAGACCCCTTTTCTAGAACAAGTAAAAGGGCCTGTTCTGGGAGTGATTTTAAAATGGTTCTAATAGTTTTTGTCATACTGAAAATCACTCCAAAAGGGATATTTAATCCTTCAAATTATTTGAACG

Coding sequence (CDS)

TATCAAACGTCGACCCCCGACCCGACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTTGCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAGAGGTGTCGGACTACCTTGACTGGCATTGCTGCATCCAAGTCTACTCCTAAGTTTACGCCTCCACCGCCTTCTTCCATTGCAAGACCTCCGCCTCCTGCTACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAAAGCCGTTTTTGATAGTCTACGGAATAACCTAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCACGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTTATTGATCTCAAGGACTCTTATCCAAACGTTATGGAAGATATGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATTCCGCGCAGTATCAAATTAGGGGCATTGTTGCCGAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGA

Protein sequence

YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAEDVPVIKTMKGIPMVCKFSCFLPSSH

Homology

[Close]

BLAST of Carg14126 vs. NCBI nr
Match: KAG7031194.1 (hypothetical protein SDJN02_05234, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 451.1 bits (1159), Expect = 5.6e-123
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTP 60
           YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTP
Sbjct: 1   YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTP 60

Query: 61  KFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSY 120
           KFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSY
Sbjct: 61  KFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSY 120

Query: 121 KSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDY 180
           KSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDY
Sbjct: 121 KSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDY 180

Query: 181 LYSAQYQIRGIVAEDVPVIKTMKGIPMVCKFSCFLPSSH 220
           LYSAQYQIRGIVAEDVPVIKTMKGIPMVCKFSCFLPSSH
Sbjct: 181 LYSAQYQIRGIVAEDVPVIKTMKGIPMVCKFSCFLPSSH 219

[Close]

BLAST of Carg14126 vs. NCBI nr
Match: KAG6600555.1 (hypothetical protein SDJN03_05788, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.4 bits (838), Expect = 9.4e-86
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTP 60
           YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTP
Sbjct: 6   YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTP 65

Query: 61  KFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSY 120
           KFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSY
Sbjct: 66  KFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSY 125

Query: 121 KSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDM 160
           KSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMED+
Sbjct: 126 KSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDL 164

[Close]

BLAST of Carg14126 vs. NCBI nr
Match: XP_011653191.1 (general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_014626 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-50
Identity = 119/203 (58.62%), Postives = 135/203 (66.50%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA---------- 91
           LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARPP PA          
Sbjct: 3   LQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERL 62

Query: 92  ------------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHY 151
                                   TRQA TP QINEACYVDINSNKAV+DSLRNN KVHY
Sbjct: 63  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHY 122

Query: 152 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKK 197
           DGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YP+VMED+ A      ++L   
Sbjct: 123 DGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 182

[Close]

BLAST of Carg14126 vs. NCBI nr
Match: XP_008452012.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_008452013.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >KAA0044840.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa] >TYK16624.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 3.2e-49
Identity = 119/203 (58.62%), Postives = 134/203 (66.01%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA---------- 91
           LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARP  PA          
Sbjct: 3   LQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTERL 62

Query: 92  ------------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHY 151
                                   TRQA TP QINEACYVDINSNKAV+DSLRNN KVHY
Sbjct: 63  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHY 122

Query: 152 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKK 197
           DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L   
Sbjct: 123 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 182

[Close]

BLAST of Carg14126 vs. NCBI nr
Match: XP_038906431.1 (general transcription factor IIE subunit 2-like [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 9.2e-49
Identity = 120/203 (59.11%), Postives = 133/203 (65.52%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIA----ASKSTPKFTPPPPSSIARPPPPA---------- 91
           LQE+LDRFKKQQERC+TTL+GIA    ASKSTPKFTP P +S  RPP PA          
Sbjct: 3   LQEQLDRFKKQQERCQTTLSGIAAAKSASKSTPKFTPAPAAS--RPPAPAVKFSNDTERL 62

Query: 92  ------------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHY 151
                                   TRQA TP QINEACYVDINSNKAVFDSLRNN KVHY
Sbjct: 63  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHY 122

Query: 152 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKK 197
           DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L   
Sbjct: 123 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 182

[Close]

BLAST of Carg14126 vs. ExPASy Swiss-Prot
Match: Q54KJ8 (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2e2 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-05
Identity = 32/111 (28.83%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 95  INSNKAVFDSLRNNLKVHYDGR-RFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYP 154
           I+    + + LRNN K+   G  RFS+K K +++ +  +L L+  +P GI V +L +SY 
Sbjct: 100 IDDKPEILELLRNNEKIIDHGNDRFSFKPKFNVRTQRDILDLLPNYPGGILVSELAESYN 159

Query: 155 NVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIR-GIVAEDVPVIKTMK 204
           N   D+    + + IF  K      D ++    ++R  + +E V + K++K
Sbjct: 160 NAESDVKKLKETKQIFAIKAAESACDIIFPNDERLRVPLSSELVDMWKSIK 210

[Close]

BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A0A0KWU5 (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-50
Identity = 119/203 (58.62%), Postives = 135/203 (66.50%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA---------- 91
           LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARPP PA          
Sbjct: 3   LQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERL 62

Query: 92  ------------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHY 151
                                   TRQA TP QINEACYVDINSNKAV+DSLRNN KVHY
Sbjct: 63  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHY 122

Query: 152 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKK 197
           DGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YP+VMED+ A      ++L   
Sbjct: 123 DGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 182

[Close]

BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A1S3BS95 (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 119/203 (58.62%), Postives = 134/203 (66.01%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA---------- 91
           LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARP  PA          
Sbjct: 3   LQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTERL 62

Query: 92  ------------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHY 151
                                   TRQA TP QINEACYVDINSNKAV+DSLRNN KVHY
Sbjct: 63  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHY 122

Query: 152 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKK 197
           DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L   
Sbjct: 123 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 182

[Close]

BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A5A7TNR4 (Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004520 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 119/203 (58.62%), Postives = 134/203 (66.01%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA---------- 91
           LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARP  PA          
Sbjct: 3   LQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTERL 62

Query: 92  ------------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHY 151
                                   TRQA TP QINEACYVDINSNKAV+DSLRNN KVHY
Sbjct: 63  QHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHY 122

Query: 152 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKK 197
           DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L   
Sbjct: 123 DGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSN 182

[Close]

BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A6J1J372 (Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482983 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.8e-49
Identity = 119/202 (58.91%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAASK---STPKFTPPPPSSIARPPPPA----------- 91
           LQEKLDRFK+QQERC+TTL+GIAASK   +TP+FTP P +S  RPP PA           
Sbjct: 3   LQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAAS--RPPAPAIKFSNDTERLQ 62

Query: 92  -----------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYD 151
                                  TRQA TP QINEACYVDINSNKAVFDSLRNN KVHYD
Sbjct: 63  HINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYD 122

Query: 152 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKR 197
           GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYP+VMED+ A      ++L    
Sbjct: 123 GRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNF 182

[Close]

BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A6J1C4F9 (Transcription initiation factor IIE subunit beta OS=Momordica charantia OX=3673 GN=LOC111008395 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.8e-49
Identity = 118/204 (57.84%), Postives = 132/204 (64.71%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAASK--STPKFTPPPPSSIARPPPPA------------ 91
           LQ+KLDRFKKQQERC+TTLTGIAASK  STPKFTP P +   RPP PA            
Sbjct: 3   LQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQH 62

Query: 92  ----------------------TRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDG 151
                                 TR A TP QINEACYVDINSNKAVFDSLRNN KVHYDG
Sbjct: 63  INSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHYDG 122

Query: 152 RRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRI 200
           RRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDSYP VMED+ A      ++L     
Sbjct: 123 RRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSNFD 182

[Close]

BLAST of Carg14126 vs. TAIR 10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 83/178 (46.63%), Postives = 110/178 (61.80%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAASK---STPKFTPPPPSSIARPPPPAT---------- 91
           L+E+LD+F KQQ +C++TL+ IA+S+   S+ +   P P++I +  P A           
Sbjct: 3   LKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDTER 62

Query: 92  --------------------------RQALTPLQINEACYVDINSNKAVFDSLRNNLKVH 151
                                     R ALTP QINE C+VD+++NKAVFDSLR N K H
Sbjct: 63  LQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPKAH 122

Query: 152 YDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFL 171
           YDGRRFSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKD+YPNVMED+ A S    I+L
Sbjct: 123 YDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

[Close]

BLAST of Carg14126 vs. TAIR 10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-29
Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = 0


Query: 32  LQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPP--------------- 91
           L+E+LD+F KQQE+C++TL+ I++S++    +  P ++ ++ P                 
Sbjct: 3   LREQLDKFNKQQEKCQSTLSSISSSRTALSRSYVPAATTSQKPNVFRGKFSENTKQLQHI 62

Query: 92  --------------------ATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGR 151
                                TR A T  QINEACYVD+++NKAVFDSLR N KVHYDGR
Sbjct: 63  TNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPKVHYDGR 122

Query: 152 RFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIF 170
           RFSYK+ H++KDK QLL  + K  + I V DLKD+YPNVMED+ +      IF
Sbjct: 123 RFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIF 175

The following BLAST results are available for this feature:

BLAST of Carg14126 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031194.1	5.6e-123	100.00	hypothetical protein SDJN02_05234, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600555.1	9.4e-86	99.37	hypothetical protein SDJN03_05788, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011653191.1	2.9e-50	58.62	general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothe...	[more]
XP_008452012.1	3.2e-49	58.62	PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_00...	[more]
XP_038906431.1	9.2e-49	59.11	general transcription factor IIE subunit 2-like [Benincasa hispida]	[more]

BLAST of Carg14126 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54KJ8	2.9e-05	28.83	General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Carg14126 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWU5	1.4e-50	58.62	Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A1S3BS95	1.5e-49	58.62	Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TNR4	1.5e-49	58.62	Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1J372	5.8e-49	58.91	Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1C4F9	5.8e-49	57.84	Transcription initiation factor IIE subunit beta OS=Momordica charantia OX=3673 ...	[more]

BLAST of Carg14126 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20330.1	1.1e-34	46.63	Transcription initiation factor TFIIE, beta subunit	[more]
AT4G21010.1	1.3e-29	42.77	Transcription initiation factor TFIIE, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040501	TFA2, Winged helix domain 2	PFAM	PF18121	TFA2_Winged_2	coord: 127..173 e-value: 3.5E-8 score: 33.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
None	No IPR available	PANTHER	PTHR12716:SF13	BNAA02G21830D PROTEIN	coord: 32..72
None	No IPR available	PANTHER	PTHR12716:SF13	BNAA02G21830D PROTEIN	coord: 78..182
IPR016656	Transcription initiation factor TFIIE, beta subunit	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 78..182
IPR016656	Transcription initiation factor TFIIE, beta subunit	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 32..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14126-RA	Carg14126-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005673	transcription factor TFIIE complex