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Carg14126 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATCAAACGTCGACCCCCGACCCGACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTTGCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAGAGGTGTCGGACTACCTTGACTGGCATTGCTGCATCCAAGTCTACTCCTAAGTTTACGCCTCCACCGCCTTCTTCCATTGCAAGACCTCCGCCTCCTGCTGTAAATTTTTCAAATGATACTGACAGACTTCCAACATATTAACAGCATAAGAAAATCCCCAGTTGGGGCTCAGTCAAGAGGGTTATCGACCTGCTGCTGGAGGTTTACATCCTTTTCCTCTTCTGTTTTGTTCTTTTTATTTCGATTGTTTTACGAGGTTTCTTTTGTTTGATCGAAGTCTTCTATGGAAGGCTATGTAGGATAGGATGCAATTCACCACGTATTGATTCGAAATGTTCACAGAGCTTCCTTACTTTCACTTAGTTCTTGTTGTTAATTTGTCCAAGTTGTACCGACTTCAATATGTTCTTTTTAATGGATGAATTTTTAACCTGGAGATTTGGCTGACCTCATAGAAAGAGGAACTCTTCAGCTAGTGGGACTTGTGATTGTCATTAGGATCCTCTTCACTACTTTGTGTTCGTGAATAAATGTGTTTTTACATGTAAATTACATATGTTAATCCGCTCACCCCTCTTTCTCATGGTTTTGAATTGACTGTTAAAGCTTAAAAAAAATTCTTTCCTGAAATGCATTTTCTCTTTTACTGTTTGTGAATTGGAACCTTAAGGGTATGTTTCAATCTTTCAGCATGCTTATTTGCATGTTAACAGACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAAAGCCGTTTTTGATAGTCTACGGAATAACCTAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGGTAATTATATTCTCAAACACTTGTGTAATTTGCACGAATCTGTACTTGTTTGGTTTAAATGTTTGAACCTTCAATGTTGTATGACATTTTTTTTCCTTTCTCTTTTTGCTGTTTTTCGTCTATTCAGTCCAAGCACGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTTATTGATCTCAAGGACTCTTATCCAAACGTTATGGAAGATATGTAAGTATGTATATTTGAGATTTTTTTTTTTTTTTTTTTAATGCCTTTTCTGTTCTGAATGAAAAAATGTGCAATATATTGATATATTTGAGATTTATGTTTCTTCAGAAGTTAAATTTTTTTATTCCATGATTGTTGATCATCATTTTTTGGCCTCCCAAACTCTATGAAGTTTTGTTTCAACGGAACTGGCCCTTATATTATTACAACTTCTTTGATTGTATAATGAATTGAAAGCATGTGGCTGTACTTTTCACTCGAAACCGAGTATAAACTTATATTTTCCAGATGATATTATGAGGTCTACATGACAGTCTATTACCTTTACTTTTCAGCTTACAATGTATTTCCCCCTCTTGTTTAGGCCCTAAAAGCCTCAGGCCAGCTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATGGCAAACCCAAATGACCCAAGAATTCAAATCAAGGTAGATGACGATCTGAAGCAACTTTTTCGGGAGTTGAATTACCTCGCGACATGCTGCTGAAACCTGCAACCAACACTGCAAAGAGGCGAGCCAATGCACAACACATAAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACTAAGCTCACCAATGCTCATCTTCCCAAGCTCTTCAAAAATTAGAGAACCCTATGCTTATAAGGTTATCTGTAGGGTGAGATGCAACAATATATAGTTATGTCAATGGACTCTGTAGATAGCCTTTTCCATCCCTTCTGTTTGATGTATTGCTGTTTTATATTTTACTTTCTTTCAATGATATCACCATAGAATTAAGTGTCCCTATGGCTACTTTAGTGTATGTCTCTGCTTTTACTTCAATTAACAGTGGAAATATAAGAGTTAAGTTCAATCAAACTAGATATATGACATGAGAAGTTTATTACAATGTGAACTTTTACATTCTGTTATTTCAAGTTTATTTTATTTCAGAATAGTTGATATGTGCATGGCTTCTATTTCCTGGACAAACCCACATTTCTGCTACGGTAGAGCACAGCCCAAGTACCAATTTAGGGAAGAGAGAAGGTTCAAAGCCTTTCAAATTGAAATTTCCAATCTATTTCTATGATGCATTGCCCAAGATTTTTAAATTTACATGGTTTTTCTTCAATTGTTCGTAGAAAGGTTTTTGAACAGGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATTCCGCGCAGTATCAAATTAGGGGCATTGTTGCCGAGGTGGGTTTCTGGCCTTCTGGTTTCTATAAATCTATTAAACGTTCAAAATTTTGTGTGAAGTTTGTTTTCATTTTATTTCTGCAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGATTGTTCTTCTACACATGGTGCACGCCAAAAAAGTCTCTCCTGCACCGAATTCCTATATTTCTTTTTATGTAACTCCCCAAACGATGTTTCTGCAGATGGATTATGATATTTCAACGAATTCTTAGTTCCTCAGAGACCCCTTTTCTAGAACAAGTAAAAGGGCCTGTTCTGGGAGTGATTTTAAAATGGTTCTAATAGTTTTTGTCATACTGAAAATCACTCCAAAAGGGATATTTAATCCTTCAAATTATTTGAACG TATCAAACGTCGACCCCCGACCCGACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTTGCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAGAGGTGTCGGACTACCTTGACTGGCATTGCTGCATCCAAGTCTACTCCTAAGTTTACGCCTCCACCGCCTTCTTCCATTGCAAGACCTCCGCCTCCTGCTACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAAAGCCGTTTTTGATAGTCTACGGAATAACCTAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCACGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTTATTGATCTCAAGGACTCTTATCCAAACGTTATGGAAGATATGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATTCCGCGCAGTATCAAATTAGGGGCATTGTTGCCGAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGATTGTTCTTCTACACATGGTGCACGCCAAAAAAGTCTCTCCTGCACCGAATTCCTATATTTCTTTTTATGTAACTCCCCAAACGATGTTTCTGCAGATGGATTATGATATTTCAACGAATTCTTAGTTCCTCAGAGACCCCTTTTCTAGAACAAGTAAAAGGGCCTGTTCTGGGAGTGATTTTAAAATGGTTCTAATAGTTTTTGTCATACTGAAAATCACTCCAAAAGGGATATTTAATCCTTCAAATTATTTGAACG TATCAAACGTCGACCCCCGACCCGACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTTGCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAGAGGTGTCGGACTACCTTGACTGGCATTGCTGCATCCAAGTCTACTCCTAAGTTTACGCCTCCACCGCCTTCTTCCATTGCAAGACCTCCGCCTCCTGCTACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAAAGCCGTTTTTGATAGTCTACGGAATAACCTAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCACGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTTATTGATCTCAAGGACTCTTATCCAAACGTTATGGAAGATATGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATTCCGCGCAGTATCAAATTAGGGGCATTGTTGCCGAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGA YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAEDVPVIKTMKGIPMVCKFSCFLPSSH Homology
BLAST of Carg14126 vs. NCBI nr
Match: KAG7031194.1 (hypothetical protein SDJN02_05234, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 451.1 bits (1159), Expect = 5.6e-123 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Carg14126 vs. NCBI nr
Match: KAG6600555.1 (hypothetical protein SDJN03_05788, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 327.4 bits (838), Expect = 9.4e-86 Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of Carg14126 vs. NCBI nr
Match: XP_011653191.1 (general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_014626 [Cucumis sativus]) HSP 1 Score: 209.5 bits (532), Expect = 2.9e-50 Identity = 119/203 (58.62%), Postives = 135/203 (66.50%), Query Frame = 0
BLAST of Carg14126 vs. NCBI nr
Match: XP_008452012.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_008452013.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >KAA0044840.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa] >TYK16624.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa]) HSP 1 Score: 206.1 bits (523), Expect = 3.2e-49 Identity = 119/203 (58.62%), Postives = 134/203 (66.01%), Query Frame = 0
BLAST of Carg14126 vs. NCBI nr
Match: XP_038906431.1 (general transcription factor IIE subunit 2-like [Benincasa hispida]) HSP 1 Score: 204.5 bits (519), Expect = 9.2e-49 Identity = 120/203 (59.11%), Postives = 133/203 (65.52%), Query Frame = 0
BLAST of Carg14126 vs. ExPASy Swiss-Prot
Match: Q54KJ8 (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2e2 PE=3 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 2.9e-05 Identity = 32/111 (28.83%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A0A0KWU5 (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 1.4e-50 Identity = 119/203 (58.62%), Postives = 135/203 (66.50%), Query Frame = 0
BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A1S3BS95 (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49 Identity = 119/203 (58.62%), Postives = 134/203 (66.01%), Query Frame = 0
BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A5A7TNR4 (Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004520 PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49 Identity = 119/203 (58.62%), Postives = 134/203 (66.01%), Query Frame = 0
BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A6J1J372 (Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482983 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 5.8e-49 Identity = 119/202 (58.91%), Postives = 133/202 (65.84%), Query Frame = 0
BLAST of Carg14126 vs. ExPASy TrEMBL
Match: A0A6J1C4F9 (Transcription initiation factor IIE subunit beta OS=Momordica charantia OX=3673 GN=LOC111008395 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 5.8e-49 Identity = 118/204 (57.84%), Postives = 132/204 (64.71%), Query Frame = 0
BLAST of Carg14126 vs. TAIR 10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit ) HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34 Identity = 83/178 (46.63%), Postives = 110/178 (61.80%), Query Frame = 0
BLAST of Carg14126 vs. TAIR 10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit ) HSP 1 Score: 127.5 bits (319), Expect = 1.3e-29 Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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