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Carg14122 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACGCGCCCTTTTCTCCGCCACCAACACAAGTCAACCACACAACCCAGCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGCTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCTGATGGTAATTTCTTTGCTTCTAGTTTGTTTTCCTGTTTCTGTGTTCTTGTTGGTTGCTGTTCTGCTGAAGAATTAGGGAATCTTCTTACGAACTTAATTGTGTGTATTCTAATTCTTTAAATAATTAGCTCAATTTAGTTGGTTCCATTCATTTCTTGATTGCAGCAATGACGAATTTCTAAATTTCTGCATGGAATGAGGGAATTTTATACCTAAAAACTTTTAAATTTTGAAGTGGTTCTTTGTTTTGTTGATTTAGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTAAGTAGTTCTGGCATACCAAATTCAAACTCACTGCCAAGTTTTGTTATCCTCTTTGCCTTGATTAATTTAAAATGATCTTAGGATTCTCTGGTTGCTTTGCTTTCATACTGGATATTATGATACCTTTATGTTTGCTTGAAGTTCACTTTAGGGGGACTAATATGACCAATTATAAGAGGATGAAAAGTATAAGAAAGTAGAGCTTTTATTTGAGATTGTAGGGAAAAATGAATGACTTTTAGAGAATATTAATGAATTTCTTCGTTAAAAGAAAGAAAAATTGATGTGAAGCTTGTTGGAAGACAAGCTTTGTGAGATCCCACGTTGGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTTCCTTAGTAGACGTGTCTTAAAAACCTTGAGGGCAAGCCCGAAAGGGAAAGCCCAAAGAGAACAATATCTACTAGCAGTGGGTTTGCACCGTTACAAATGGTATTAGAGCCAGACACCGAGCGATGTGCCAGTGAAAGGCTGAGCCCCGAAGGAGGGTGGACACAAGGCGGTGTGCCAGCGAGGAGCTGGGCCCCAAAAGAGGGTGGATTGTGAGATCTCACATTGGTTGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGAGGAGAAGCCTGAAAGGGAAAATCCAAAGAGAACAATATCTGCTAGCGGTGGGATTGAGCCGTTACAGCTTGAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGTGAGGGGCAGAGAAAGGAAGTTCTACATGAACAGGGGAGCCTAAGAAATTCTTCAAAACCAAAAGGAAGTGCTGAAAGATTTTCCGATTGACATTTGTATCAAAAGAGAAGAAAAGCTGCAAATCTTATAACCTTGGATTTCTCGTTTACTTCCCCCTCCGGAAAATACCATATGTTTCTTTGGGCACTAAATGTATTAGGGTCATGTAGCTGTCTGTCTTGTGTGAAATATTTTGGTGCACGTAAGCTAGCTTGGACACTCATAGGTGCACGCAAGCTAGCTCGGACACTCGCAGATAAAGAAAAGAATGGTGAGGTAAACATCCCTAATGAGTCTCAGGGAAAGGTAATCAATAATGAGAGACCTTTTTCACCTGCTTTGTAGTTCTTCAATTTTTGTTTAACTATTGATTCATGTGTGCTTAAATATCATCCCAAAGTGAATACTAGAACATTGTAGGGGTATGAATTTTAGACTTTGTCCTCTAATCTCGTATGACCATATTAAAACACCACGGAATTTGAGGCCGATGAATCCATCTAGTAACCTAGTAACCCGAAGTCGAAGTAAATAGTTTGAATTCGGTCTATTTTAGACTAAATAATGTTCCATTTTGTGATTGATGAGGATGTTTGGTGTTAATTTTGGGTGATATTCCAGGTGAGACTGATGCATGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCCAATCTTCTGGGAGCCGACCCATCTGTCGTGAATCTGAAAGCAAAAACGCACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATCTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTCAAGAACATTAGAAATTGGCTACAATGACTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTGGTGTGTGAAAGATGTAAAGATGAGGTGGAAATTACTCTTTCATTTTGTCAAAAGCCAGTAATCATTAATTATATTTGAGTCGAATTGTGTACAATTT TACGCGCCCTTTTCTCCGCCACCAACACAAGTCAACCACACAACCCAGCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGCTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCTGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCCAATCTTCTGGGAGCCGACCCATCTGTCGTGAATCTGAAAGCAAAAACGCACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATCTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTCAAGAACATTAGAAATTGGCTACAATGACTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTGGTGTGTGAAAGATGTAAAGATGAGGTGGAAATTACTCTTTCATTTTGTCAAAAGCCAGTAATCATTAATTATATTTGAGTCGAATTGTGTACAATTT ATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCCCTTTCTCTTTCCGTCTACCCCCGCTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCTGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCCAATCTTCTGGGAGCCGACCCATCTGTCGTGAATCTGAAAGCAAAAACGCACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAG MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR Homology
BLAST of Carg14122 vs. NCBI nr
Match: KAG6600551.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031190.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 461.8 bits (1187), Expect = 3.4e-126 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of Carg14122 vs. NCBI nr
Match: XP_023548820.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 458.8 bits (1179), Expect = 2.9e-125 Identity = 234/236 (99.15%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of Carg14122 vs. NCBI nr
Match: XP_022982530.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita maxima]) HSP 1 Score: 457.2 bits (1175), Expect = 8.5e-125 Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of Carg14122 vs. NCBI nr
Match: XP_022942995.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita moschata] >XP_023548808.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 456.8 bits (1174), Expect = 1.1e-124 Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of Carg14122 vs. NCBI nr
Match: XP_022136770.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Momordica charantia]) HSP 1 Score: 389.0 bits (998), Expect = 2.8e-104 Identity = 204/238 (85.71%), Postives = 214/238 (89.92%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy Swiss-Prot
Match: Q9CAK8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISPF PE=1 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 5.6e-87 Identity = 162/197 (82.23%), Postives = 174/197 (88.32%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy Swiss-Prot
Match: Q6EPN6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISPF PE=1 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 4.4e-84 Identity = 156/200 (78.00%), Postives = 177/200 (88.50%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy Swiss-Prot
Match: Q9M4W3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=ISPF PE=2 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 7.5e-84 Identity = 166/233 (71.24%), Postives = 189/233 (81.12%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy Swiss-Prot
Match: Q1LLZ4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=ispF PE=3 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 2.2e-43 Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy Swiss-Prot
Match: Q2NAE1 (Bifunctional enzyme IspD/IspF OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=ispDF PE=3 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 3.8e-43 Identity = 78/167 (46.71%), Postives = 110/167 (65.87%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy TrEMBL
Match: A0A6J1J2X8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita maxima OX=3661 GN=LOC111481338 PE=3 SV=1) HSP 1 Score: 457.2 bits (1175), Expect = 4.1e-125 Identity = 233/236 (98.73%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy TrEMBL
Match: A0A6J1FX89 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita moschata OX=3662 GN=LOC111447862 PE=3 SV=1) HSP 1 Score: 456.8 bits (1174), Expect = 5.4e-125 Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy TrEMBL
Match: A0A6J1C4W9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Momordica charantia OX=3673 GN=LOC111008394 PE=3 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104 Identity = 204/238 (85.71%), Postives = 214/238 (89.92%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy TrEMBL
Match: A0A5D3D287 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004470 PE=3 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 5.2e-104 Identity = 201/236 (85.17%), Postives = 208/236 (88.14%), Query Frame = 0
BLAST of Carg14122 vs. ExPASy TrEMBL
Match: A0A1S3BTZ8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo OX=3656 GN=LOC103493142 PE=3 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 5.2e-104 Identity = 201/236 (85.17%), Postives = 208/236 (88.14%), Query Frame = 0
BLAST of Carg14122 vs. TAIR 10
Match: AT1G63970.1 (isoprenoid F ) HSP 1 Score: 322.0 bits (824), Expect = 4.0e-88 Identity = 162/197 (82.23%), Postives = 174/197 (88.32%), Query Frame = 0
BLAST of Carg14122 vs. TAIR 10
Match: AT1G63970.2 (isoprenoid F ) HSP 1 Score: 297.0 bits (759), Expect = 1.4e-80 Identity = 154/197 (78.17%), Postives = 166/197 (84.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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