Carg14065 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14065
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 6277931 .. 6279255 (-)
RNA-Seq ExpressionCarg14065
SyntenyCarg14065
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAACTACGAACACTGGTAAAGATATGATTATTGAAGTTACTTTCTTAATTGTTGATCTTTTAGCTTTTATGCAGGATTTTCCAGATTTTGTATTACTCTCGGTATCACTTTTTAGCATAAGCTTGAAATCTTGAATTGAATGCGGTAGAGCTGAATTCAGAAGGTAAAATCTTAAAGACAGCAATCTGAGGCAGCTCACGCCGTCTTCTTCTTTTTGTTCTTCCTCTTCTCTACGTAATTGTACAGTTCAGGCTTGCAGAATACTTGTCTTTTACTGCTAAATTTTTTCCGTCCAAATGTTTATCGAAACAGCAAAATAACAGTTGTTTACAGTGAGTCTCAATTATTGCAAGTTTTCTTTAACTATTTCTAAAATTGTATACTTCAATAATTTACTGATCTTTTCTATCAATCTTTTATCTTTATCCTTTTGAGGCTACTTTATTAGTAAGATCGGTAGTGATATTTCAATGGACGGATCTGTTTGTCCCATCAACGATATCTTGTCTTCAACTTGTCCAGCAGGGTCGGTTACTGCTCATATTTGGAAGCTCTACTATCACAAGCTTTGTGCAAAATATGTCAGTTATCGTTGGAAAGTTCTGGTACACATGTCTTGTGATTGTACTGTTTATATCTTTTATTTATTTGCATGCCAGTTCCATCCGTCTTCCAAGCTAGACTCATTATCTCTTTTGATCTATACTAGACACATGATCTAAGACTTGTCAGTCGTGGATGTAATGTAATGTTTGTGATATGTTTTTGTTGTTATTTGGTACAAGTACAAATATTTTTATGCAATTCTCAGTAATACTCAAATACTACGTATGAAAGCTAAAGTCTATTTAGATTTGAAGCAAGTTAACGCATACGGGACAGGAAATAACTCTAATGCTTGAAACTTTCAGAATTTATACCAATGTCCTTAGATATGTTTGTAATATCTTTGTAATGGAACAAATAGATTTGTATGATGATGGGATGTTCACCTATATTTGTGTTGTGCTCACGCATTGGTCCTGGCTTAACCAGCCAACCACTGAGGCGTCTTACTTATTTTACAGGGCTCGGATTGATCTTGGTTGATGCATTTCTCAGGCCTCTTTGGTCAGTTCTGAGTTAACCCATAACATTAGCGCCACTGATGACCCGACCTATGTGGTGGTCAGGTCGATGTGTCCGCTGATTTGGATGACATCTCGGCACGCATGCGGTGGCAATGATGGATCACTTGCCCTCTGCTTCTCTGTTGGCCGGTCGATGGGGGTCGATTCTAGATTTAATAGTCACAACTCGATTTGGATGACCTTTGGGAATGCA

mRNA sequence

TTCAACTACGAACACTGGTAAAGATATGATTATTGAAGTTACTTTCTTAATTGTTGATCTTTTAGCTTTTATGCAGGATTTTCCAGATTTTGTATTACTCTCGGTATCACTTTTTAGCATAAGCTTGAAATCTTGAATTGAATGCGGTAGAGCTGAATTCAGAAGGGTCGGTTACTGCTCATATTTGGAAGCTCTACTATCACAAGCTTTGTGCAAAATATGTCAGTTATCGTTGGAAAGTTCTGGCCTCTTTGGTCAGTTCTGAGTTAACCCATAACATTAGCGCCACTGATGACCCGACCTATGTGGTGGTCAGGTCGATGTGTCCGCTGATTTGGATGACATCTCGGCACGCATGCGGTGGCAATGATGGATCACTTGCCCTCTGCTTCTCTGTTGGCCGGTCGATGGGGGTCGATTCTAGATTTAATAGTCACAACTCGATTTGGATGACCTTTGGGAATGCA

Coding sequence (CDS)

ATGTGTCCGCTGATTTGGATGACATCTCGGCACGCATGCGGTGGCAATGATGGATCACTTGCCCTCTGCTTCTCTGTTGGCCGGTCGATGGGGGTCGATTCTAGATTTAATAGTCACAACTCGATTTGGATGACCTTTGGGAATGCA

Protein sequence

MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA
Homology
[Close]
BLAST of Carg14065 vs. NCBI nr
Match: KAG6587793.1 (hypothetical protein SDJN03_16358, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 4.0e-21
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1   MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA 50
           MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA
Sbjct: 57  MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA 105

[Close]
BLAST of Carg14065 vs. NCBI nr
Match: KAG7035703.1 (hypothetical protein SDJN02_02501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 4.0e-21
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA 50
          MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA
Sbjct: 1  MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA 49

The following BLAST results are available for this feature:
BLAST of Carg14065 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587793.14.0e-21100.00hypothetical protein SDJN03_16358, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035703.14.0e-21100.00hypothetical protein SDJN02_02501, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg14065 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14065 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14065 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14065-RACarg14065-RAmRNA