Carg14028 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14028
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Polypyrimidine tract-binding protein-like protein 2
Location	Carg_Chr02: 6477148 .. 6480354 (+)
RNA-Seq Expression	Carg14028
Synteny	Carg14028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGTGCGTATGGCTCTCGGGCGGCCCGGAGCCGGGCGGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCCTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTCGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGTGCGGATTAATAATTTGATTCCGTTGATTCATTCTGTAATGTGTCATACTCTGATCAAGATTTCGAAGTGATTTCGAAGTGTGAAGACTATCCTTACAAACCATGATACAACACGACCATGTTAGGTGCGAAGATTGTCCTTGCAAATTAACATGATTCTTTTAACCTATTTTGATGTTTTTTTAGGGAAAAGTATGCTATGATTGAGCTACCGAAAAGAGAAGTTGTTCTTTGTTGATATAAGTGGTAACTTTCCGTTCTTTTAAGTATTTCTTAACGGTTACTTAGTCAAGATCCTCAAAATTACTCTAGTTCGGATGTAGTCTACCCCTTCTTTACTCGGGGTCACATTCAGTTTCTACTTTCCAGGTAAAAAATAATCTTCGACTGAAATTTGACTTGTTCTTTTATTTTCTTTACTTTAGCTGTCCAAAGTTAGTACATCTAGTTATCTACTGCCATGCCAGAATTACAGAGTTCTTGTCAACTTGAGCTGATTATGGCATTTCTAATGTTCAAAGTCCCCCACAGCCACGCGCGTTTCTCACAGGCATTCTCTTTCTTGAGAAATTATTTGAGTTAATTTAGAACACGCATCGATTGCTTTTTCGTTAGTGATATACAGAAAAAGCAAGTAAATTAGATGTAAATTGGCCTCAAACTAATGGTGTGACTGTTTTAAAGATTTACTAGAAGTACAAGGACTAGGATGGAACAAGTCTCAAAATTGAGGACCAAAATGGTGTTTTAACCATATTGGAATTTAACTACAGGCATAACCTCACTTCAAATTTGCTATTTTAGATCGATCATTTGGTTCTTTGGTTTGGTTTGATGAGATTTGCTGTGTTAGTTCACTCTTGATCTCTTCCCTTGGTTTTTTAGAATTAGTACAAGAAAACGACAAAAGTCTAACTGTATGCGTAACAAGTCAAGTCTACCGCTAGCAGATATTGTCCTCTTTAGGCTTTCCCCTTCCGGGCTTCCCCTCAAGATTTTAAAACGCGTCTACTAGGGAGTGGATTTTACACTCTTATAAGGAATGTTTTATTCCCTTCTCCATCCAACGCGGGATCGCACATTTTGACTCTCTCTGAACAGGGGTTCTGTTCAACCACACTAACTGAGTTATCTACCTATGGCATGGAAAATCAAGCAACCTTTTAAAATCACTCACTTCTTTGAAGAGTCTCAAGTTTCAGGGTCAATGGAGCCAAAGCCATTTTCCTACCATTGCTAGAAAACTTGGATTTCTAGTAAAATGAGTGAAAGAGTGTGTAGTCTGAGGCTTTTTAGGTAACATTTCTATTTCTTTCTTGTTTCTTGTTTTTTCTTATTGAATTTTGAAAATACACGAAATGGTTACTGTCAGAATGGAAGATTATATATTCCTTTTGACTATGGTTACCCCAGTTTCATTTTTCAATTAAAAAACTGGTCAGCGATTTTTAGTTACTCCTGTAGAACAGTATTGTTATATCACTTCGGATGGAATTTTCAATTACCTTCTTTTTCCCTGATTTTAGAGTCAGAGTCGGGTGCTTTTACTACTACGAATCTTTGGTGGTATACTCCTCGAGCCATCCTTTGCCTTCTAAGTACTTGACAATGCTTTGGGATTCGCCTTCCTTTGTTACTCCTACTGGAGGTCTCACTTCTGATACAAGGGACACATAACTATGAATCTCCATGTCCAAGACAAGAAGCTATGCCAAAATCTTGAAAATGCTCACCACAGTTTATGATTTGCATTGTAGGACAACTATGTGGCCAATTCCTTCTGTTCATAATGTTAACTTTTGCAGCATTAGTGTTTGTTTTCTGTTTTTTTCCCCCTCCTTTTGCACTTTATAAGAGCTGTCATTCAATCCACTTCTGCAGGAACAAAAAGGACATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTACGAGAGAGCCGACGGTCATGTTCAGATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATGGGCAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCAAGCTTCTGGTATGTGCATGAATATTTATATTTTACTGTTGAACAGCGAACAAATGAGATGATGTTTATTGTGTTATTTATAGCATATAATGTATAGAAGTATTACTATGTTATATTGCAGATTGTCCGTCTTCAAGTAAAAGAGTATTGATCTATTTTTGTTTGTTTTGAATTATAGGTTTATACCTTCTGCATAATCATATACTTCTATTACTTTTAGTTTCTTAACTTTCTTATCGTGCGAGATCGTATCAAAGAGGAGTTTGCTGGTATATAATGTCTATAATTCACTTAATCACCTAATGTTCTGTTTTCGTGATTATGAGTAGTACTTCAATATTTGTTCAAGGGAAGAAATTCTGACTTGGAGTCTCTGCATTTTTATAACGAAGTGGTTGTACAATGAATGGCATCCAAATGAAGTGATGTGAATGTCGATGCAGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCAGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGA

mRNA sequence

ATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGTGCGTATGGCTCTCGGGCGGCCCGGAGCCGGGCGGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCCTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTCGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGAACAAAAAGGACATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTACGAGAGAGCCGACGGTCATGTTCAGATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATGGGCAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCAAGCTTCTGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCAGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGA

Coding sequence (CDS)

ATGGTGAAGCTCGCTTCCGCTAGGGATTTCAGTGCGTATGGCTCTCGGGCGGCCCGGAGCCGGGCGGAGTACATAAACGCCGGCCTCTACTTGTTCGCCACTATCCTTCTTCTCGGCGGATTTGTGGCTCAGCTTTCGCGCGAGGCCAAATCCGGTTTGGCCCTAATTGTGCTCGCGGCTGCGCTAATTTTGATTGTTAATGTGCACGATCTCTTCGCGCATCTCGCCGGAATCGATTACCGGTTGCCGCTGCTGGCCCAGTACGACGTCCAGCTTCTGTTTGTGGAATTTGCTGTTCCATTTCTTCAGGCGATTGGATCGTTGCTCTTGTTGTTGGGTACTCTGTTTCTTCTAATTCAGGAACAAAAAGGACATGATTATTACAAACTAGAAAAGCATGTTTTGGATATGCTTATTGCGGGTCCTGCCTTGTGGATCCTTGGATCAATCCTCAACTCATGCCAAATCTACGAGAGAGCCGACGGTCATGTTCAGATCTTGCAACAGAGTGTCCACATTCCGTTTTTAATGGGCAGCTTGCTATTCTTTGTTGCTGCAGTCCTCAATGGCTTTGAGCAGGCCGGGTTAGCCCATCACGGACTCAAGCTTCTGGGCAAAAACTGGGTTTGGTTAGGCATCTTTGGGAGCTTGTCACTCTTGTTAGGCGGATTGGCAAACGTGCATAAGGTATTCAAGATGCAGCAGTTTGATGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCGAACGAGCGTCTTCTCGGAGAACGAGAAGGCAGGATTCCCCTAATCCTAGAGGATCAGGGGCGGAGAAAACGACTCTCAGATGAAGAAAAGGGAAGGCAAGCCGCTCCAACCCCTTATAAAGATGTCCTTGTAGGCCAAACTTCCTGA

Protein sequence

MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAAALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQEQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSLLFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS

Homology

[Close]

BLAST of Carg14028 vs. NCBI nr
Match: KAG7035737.1 (hypothetical protein SDJN02_02535, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 566.2 bits (1458), Expect = 1.6e-157
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 296

[Close]

BLAST of Carg14028 vs. NCBI nr
Match: KAG6605771.1 (Polypyrimidine tract-binding protein-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 553.1 bits (1424), Expect = 1.4e-153
Identity = 290/294 (98.64%), Postives = 291/294 (98.98%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDFSAYG RAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFSAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNV DLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ
Sbjct: 61  ALILIVNVQDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQ 295
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVL+ Q
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLLFQ 294

[Close]

BLAST of Carg14028 vs. NCBI nr
Match: XP_022995388.1 (uncharacterized protein LOC111490949 [Cucurbita maxima])

HSP 1 Score: 550.1 bits (1416), Expect = 1.2e-152
Identity = 287/296 (96.96%), Postives = 290/296 (97.97%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDF AYG RAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEF+VPFLQAIGSLLL LGTLFLLIQ
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFSVPFLQAIGSLLLSLGTLFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAH GLKLLGKNWVW GIFGSLSLLLGGL NVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHRGLKLLGKNWVWFGIFGSLSLLLGGLGNVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQA+PTPYKDVLVGQTS
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQASPTPYKDVLVGQTS 296

[Close]

BLAST of Carg14028 vs. NCBI nr
Match: TYK05966.1 (polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 496.5 bits (1277), Expect = 1.6e-136
Identity = 257/295 (87.12%), Postives = 271/295 (91.86%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDF  YG R  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           E+KGHDY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGLKLLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]

BLAST of Carg14028 vs. NCBI nr
Match: XP_038874807.1 (uncharacterized protein LOC120067318 [Benincasa hispida])

HSP 1 Score: 494.6 bits (1272), Expect = 6.0e-136
Identity = 257/296 (86.82%), Postives = 271/296 (91.55%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDF  YG R  R+RAEYINAGLYLFAT+LLLGGFVAQLSRE  SGLALI+ A 
Sbjct: 1   MVKLVSARDFRVYGPRPVRNRAEYINAGLYLFATVLLLGGFVAQLSREPMSGLALILFAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALI IVN+HDLFAHLAGIDYRLPLL QYD QLLFVEF+VPFLQAIGSLLL LG LFLLIQ
Sbjct: 61  ALITIVNLHDLFAHLAGIDYRLPLLVQYDAQLLFVEFSVPFLQAIGSLLLSLGALFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           EQKGHDYYKLEKH  +MLIAGPALW+LGSILNSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EQKGHDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQA LAHHGL+LLGKNWVWLGIFGSLSLLLGGL+NV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNRYEQAKLAHHGLRLLGKNWVWLGIFGSLSLLLGGLSNVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 297
           LEKLRGGANERLL EREGRIPLILEDQGRRKR  DEEKGR+A  TPYKDVLVGQ+S
Sbjct: 241 LEKLRGGANERLLEEREGRIPLILEDQGRRKRHVDEEKGREARSTPYKDVLVGQSS 296

[Close]

BLAST of Carg14028 vs. ExPASy TrEMBL
Match: A0A6J1K7T0 (uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.8e-153
Identity = 287/296 (96.96%), Postives = 290/296 (97.97%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKLASARDF AYG RAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA
Sbjct: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEF+VPFLQAIGSLLL LGTLFLLIQ
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFSVPFLQAIGSLLLSLGTLFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLNGFEQAGLAH GLKLLGKNWVW GIFGSLSLLLGGL NVHKVFKMQQFDGLR
Sbjct: 181 LFFVAAVLNGFEQAGLAHRGLKLLGKNWVWFGIFGSLSLLLGGLGNVHKVFKMQQFDGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQTS 297
           LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQA+PTPYKDVLVGQTS
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQASPTPYKDVLVGQTS 296

[Close]

BLAST of Carg14028 vs. ExPASy TrEMBL
Match: A0A5D3C6J8 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00600 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.7e-137
Identity = 257/295 (87.12%), Postives = 271/295 (91.86%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDF  YG R  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           E+KGHDY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGLKLLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]

BLAST of Carg14028 vs. ExPASy TrEMBL
Match: A0A1S3AUZ4 (LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis melo OX=3656 GN=LOC103482951 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.9e-136
Identity = 256/295 (86.78%), Postives = 271/295 (91.86%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDF  YG R  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGID+RLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           E+KGHDY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGLKLLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVLVGQT 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVLVGQS 295

[Close]

BLAST of Carg14028 vs. ExPASy TrEMBL
Match: A0A5A7TLW2 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00560 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.5e-135
Identity = 254/291 (87.29%), Postives = 267/291 (91.75%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDF  YG R  R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +LI IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL L  LFLLIQ
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           E+KGHDY KLEKH  +MLIAGPALW+LGSI NSCQIYERADGHVQILQQSVHIPFL+GSL
Sbjct: 121 EKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYERADGHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGLKLLGKNW+WLGIFGSLSLLLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSLLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQAAPTPYKDVL 292
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR+A PTPYKDVL
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGREARPTPYKDVL 291

[Close]

BLAST of Carg14028 vs. ExPASy TrEMBL
Match: A0A0A0KJH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 2.7e-134
Identity = 253/296 (85.47%), Postives = 269/296 (90.88%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60
           MVKL SARDF  YG R+ R+RAEYINAGLYLFATILLLGGFVAQLSRE KSGLALI+LA 
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLIQ 120
           +L  IVN+HDLFAHLAGIDYRLPLL QYD QL FVEFAVPFLQAIGSLLL    LFLLIQ
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLIQ 120

Query: 121 EQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGSL 180
           E+KGHDY+KLEKH  +MLIAGPALW+LGSI NSCQIYERAD HVQILQQSVHIPFL+GSL
Sbjct: 121 EKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYERADAHVQILQQSVHIPFLIGSL 180

Query: 181 LFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGLR 240
           LFFVAAVLN +EQ GLAHHGLKLLGKNW+WLGIFGSLS LLGGLANV KVFKMQQF+GLR
Sbjct: 181 LFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSFLLGGLANVLKVFKMQQFEGLR 240

Query: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGR-QAAPTPYKDVLVGQT 296
           LEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEE+GR +A PTPYKDVLVGQ+
Sbjct: 241 LEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERGRVEARPTPYKDVLVGQS 296

[Close]

BLAST of Carg14028 vs. TAIR 10
Match: AT5G24130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 324.7 bits (831), Expect = 7.7e-89
Identity = 181/316 (57.28%), Postives = 219/316 (69.30%), Query Frame = 0


Query: 1   MVKLASARDFSAYGSRAARSRAEYINAGLYLFATILLLGGFVAQ-LSREAKSGLALIVLA 60
           MVKLA+AR+   YG R  RSRAEYINAGLYLFAT++L+GGF A   S E +SGL LI+LA
Sbjct: 1   MVKLATAREIRTYGPRLGRSRAEYINAGLYLFATVVLIGGFTATGFSWEPRSGLVLILLA 60

Query: 61  AALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFAVPFLQAIGSLLLLLGTLFLLI 120
             LI  VNVHDL AHLAGIDYRL L+ +YD+QL  VEFAVP +Q  GS++  LG  F+  
Sbjct: 61  LVLITAVNVHDLVAHLAGIDYRLRLM-EYDLQLGLVEFAVPLVQIAGSVVFFLGIFFVFH 120

Query: 121 QEQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYERADGHVQILQQSVHIPFLMGS 180
           Q +    Y   E H L++LIAGP LW++GSI NSCQIYERAD HVQILQQ V+IPFL+GS
Sbjct: 121 QAETKRGYSGREHHALNLLIAGPLLWLIGSIHNSCQIYERADSHVQILQQCVYIPFLVGS 180

Query: 181 LLFFVAAVLNGFEQAGLAHHGLKLLGKNWVWLGIFGSLSLLLGGLANVHKVFKMQQFDGL 240
           LLF V+AVLN  + +G +  GLKLLG+ W+WLGI G++ L +GGL NV KVF   Q  GL
Sbjct: 181 LLFLVSAVLNSLDISGSSRSGLKLLGERWIWLGISGAICLFVGGLLNVVKVFNFVQISGL 240

Query: 241 RLEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKGRQA----------------- 295
           RLEKLRGGA +RLL  REG +PL+ E++  RK  +D E   +A                 
Sbjct: 241 RLEKLRGGAQDRLLEGREGYLPLVAEEERIRKMEADHEASSRAKPRAHTTSKAGEGATET 300

The following BLAST results are available for this feature:

BLAST of Carg14028 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035737.1	1.6e-157	100.00	hypothetical protein SDJN02_02535, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6605771.1	1.4e-153	98.64	Polypyrimidine tract-binding protein-like 2, partial [Cucurbita argyrosperma sub...	[more]
XP_022995388.1	1.2e-152	96.96	uncharacterized protein LOC111490949 [Cucurbita maxima]	[more]
TYK05966.1	1.6e-136	87.12	polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa]	[more]
XP_038874807.1	6.0e-136	86.82	uncharacterized protein LOC120067318 [Benincasa hispida]	[more]

BLAST of Carg14028 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7T0	5.8e-153	96.96	uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949...	[more]
A0A5D3C6J8	7.7e-137	87.12	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3AUZ4	2.9e-136	86.78	LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis m...	[more]
A0A5A7TLW2	5.5e-135	87.29	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KJH6	2.7e-134	85.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1	[more]

BLAST of Carg14028 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24130.1	7.7e-89	57.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..296
None	No IPR available	PANTHER	PTHR34967	OS02G0257200 PROTEIN	coord: 1..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14028-RA	Carg14028-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding