Carg13992 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13992
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 6696751 .. 6699250 (+)
RNA-Seq Expression	Carg13992
Synteny	Carg13992

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTTTACAATTCGTGTTTGCAGAGAAAAGAAAACGGGAGGGAACAGAAACGAACCCGAAGGGCGTGGTGGTAGAGATGGGTTACATCCTGCGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACGTTCTTCAAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGGTATTTGGATTTTCATATTTATGTCTATGTTGCGAGTTTCGTGAATTACTTTTCTTGCATTCGATTTGGGAGCTTCATTTGTAGTTCTTTTTTTTTTCCTGATTGAATTTATTTGAGATTTAGTTTTCGTTTTGGATAATCGAGCTAGCTTTGAAATAGCAGAGGCGGAAATACAGATTTGTATTCGATGCTTGTTTAATGGCTCGTCTCTGTGCGATAGATTAATGGAGAAAAAGGAAAATTAGGGGTTTCGTTGTCGGTGGATAAAATTAATTTGATGCGAACTGATCGCTACAGCGGTATTCGTCGATTTTGGGCGACTTTTTGCTAGATTGTTGCTGAAATTTCCTTTCCTGGCTCAATAAGAAAAAAAAAAAAAAAAATTACAGAAGAGGAAGATGAAGAAGAGCTTGCCGTAATGGAAACTATGCATTTCAACAAAATTAATTTACTTGATTGGCTGTGTAGACTTGATGATCGTATTGACATGTGTGTGAAACAGAACCACCATTGTGTTGCTTATGGGAGTTTGTGCAATTTTGTAGAGTATTTAGGCAGATGAACATAGTGTTAGGAATCACGACTCTCCACGATGGTATGATATTGTCCTCTTTGAGCATAAGCTCTCATGGCTTTGTTTTGGGCTTCTCCAAAAGGCCTCGAACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAACGTGAGACTCACTCCCAATAATCCTCAACACATAGAGCTTTAATGTTGTTTGAGGTCTAAGGAAGACGTGTGCAACCTTGGTTGGTTCCATGTCTCTCTTATGGCTTCGGTCATTAAAACTTATTGTAATTATCCTTTAGGTCTCATTTTGCTTGATTGATGCCCACATTTATTACACATTTTAAAAATTCAAAAACCTATTAGACATGAAATTGAAAGTTTATAGACCTATTCGATACGATATAACTACGAAAGTTTATAGATTAAACTTGTGATTTGGCCTTGATTTTTTCTCTTTTGAATAGATAAGGCACATTGATTTAGCGGTGTGTTCATGGACTCGAGACCTCTTTAAGGCCTCCTATTTGAGAAACTAAATATCTCATGAATTTCTTGATTGTCAAGTTTATAGATTAAACTTGTGCATTTTTTAAAGTTTCTTTCTCTCGTGTTTGGTTGCTTTTCCTGATGTTCATACTTCCTTAAATATTGTTTGCAAAATCTTATTTGAAATTTCTTAAAGATGATCAAGTAGTGTATTCATATTTGATTCTCATCTTCAGATTAATGGAATTGCCGTTGATGTTTTGAAATGCAAGATTCAGTTAAGTTTACCAGTCAAATTTCTGCTCGATGAAGTCGAACTAACTATATGATATATAGCTGAATCAAACGATTTAGAGCATGACAGTTTCTTTTCATTGAGAATCAAGCACGCAAATGAAATTAAATCTCTGTTGGGTTGAGGATTATTGGGAGTGAGTCCCACCTTCGTTAATTTAGTGTAAGATCATGGGTTTATAAGTTAGGAATGCTATCTTTATTGGTTTGAGGCCTTTTGGGGAACCTCAAAGCAAAGCCACGAGAGCTTATGCTCGAAGTGGACAATATCATACCATTGTGGAGATCCGTGATTCCTAACAAAATTCATGTCTACTCTCAATAGTGATGAACCCTTGGAGTCTGAAGGAAGTTGATACGTTTTTGAAACATGCGTTCATAAGTCAGCTCACCTGCTCGTTTATAACGATGCATCATTGCCATTTTTCTGTCCATAGTTTCTTCCGTGTCGAAATCCCAAACTAGTTAAGATCTTTGTTCCGTGTTTCTATCGCCTATCGGATTATCTGTTGAGAGGGACGAAAGCGAGGGGGTGATTCATGATAACTTATTGTGTTTCCTAATGGTTATTCAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAGACACACACTGGAGGGGCCAAGCCAGGATAGTCTGAAGGAAACATAAAGAACTTATGAACAATAATAATAAACTGGTCTGCTTTGTCTGCTCATCAAAAAAGATGTTTTAAGTTTTGGTTGCAAGATTTGTTTATTTCCTGTATGATCTTTGTTTGTTGGTATCAGATTTAGGCTTGTTCCATGCTGGTAGCTATGTTGCTGTGATGTTAACCCTGCTCGTGTAAGACTTGGGTATGAGTTTGATGAGAAATCATTATATCAGATTTCTAAATATACATATTTTTTCA

mRNA sequence

TTTCTTTTACAATTCGTGTTTGCAGAGAAAAGAAAACGGGAGGGAACAGAAACGAACCCGAAGGGCGTGGTGGTAGAGATGGGTTACATCCTGCGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACGTTCTTCAAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAGACACACACTGGAGGGGCCAAGCCAGGATAGTCTGAAGGAAACATAAAGAACTTATGAACAATAATAATAAACTGGTCTGCTTTGTCTGCTCATCAAAAAAGATGTTTTAAGTTTTGGTTGCAAGATTTGTTTATTTCCTGTATGATCTTTGTTTGTTGGTATCAGATTTAGGCTTGTTCCATGCTGGTAGCTATGTTGCTGTGATGTTAACCCTGCTCGTGTAAGACTTGGGTATGAGTTTGATGAGAAATCATTATATCAGATTTCTAAATATACATATTTTTTCA

Coding sequence (CDS)

TTTCTTTTACAATTCGTGTTTGCAGAGAAAAGAAAACGGGAGGGAACAGAAACGAACCCGAAGGGCGTGGTGGTAGAGATGGGTTACATCCTGCGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACGTTCTTCAAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAG

Protein sequence

FLLQFVFAEKRKREGTETNPKGVVVEMGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLNQNDGSQHVQRAE

Homology

[Close]

BLAST of Carg13992 vs. NCBI nr
Match: KAG7035773.1 (hypothetical protein SDJN02_02571, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  FLLQFVFAEKRKREGTETNPKGVVVEMGYILRVRLASFFAGAAVASSLGFYVLQRDYKIA 60
          FLLQFVFAEKRKREGTETNPKGVVVEMGYILRVRLASFFAGAAVASSLGFYVLQRDYKIA
Sbjct: 1  FLLQFVFAEKRKREGTETNPKGVVVEMGYILRVRLASFFAGAAVASSLGFYVLQRDYKIA 60

Query: 61 YDSISQKMGGLHDSLESRISALEKLNQNDGSQHVQRAE 99
          YDSISQKMGGLHDSLESRISALEKLNQNDGSQHVQRAE
Sbjct: 61 YDSISQKMGGLHDSLESRISALEKLNQNDGSQHVQRAE 98

[Close]

BLAST of Carg13992 vs. NCBI nr
Match: XP_022974358.1 (uncharacterized protein LOC111472986 [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 22 GVVVEMGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISA 81
          G V EMGY+LRVRLASFFAGAAVASSLG Y+LQRDYKIAYDSISQKMGGLHDS+ESRISA
Sbjct: 19 GWVGEMGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISA 78

Query: 82 LEKLNQNDGSQHVQRAE 99
          LEKLNQNDGSQHVQ AE
Sbjct: 79 LEKLNQNDGSQHVQAAE 95

[Close]

BLAST of Carg13992 vs. NCBI nr
Match: XP_023551615.1 (uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+LRVRLASFFAGAAVASSLG Y+LQRDYKIAYDSISQKMGGLHDS+ESRISALEKLN
Sbjct: 1  MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 60

Query: 87 QNDGSQHVQRAE 99
          QNDGSQHVQ AE
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Carg13992 vs. NCBI nr
Match: XP_022138131.1 (uncharacterized protein LOC111009377 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 4.4e-27
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+LRVRLASFFAGAAVASSLG Y+LQRDYKIAYDSISQKMGGLHDSLESRISALEKLN
Sbjct: 1  MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60

Query: 87 QNDGSQHVQRAE 99
          QNDGSQHV  AE
Sbjct: 61 QNDGSQHVHTAE 72

[Close]

BLAST of Carg13992 vs. NCBI nr
Match: XP_022922390.1 (uncharacterized protein LOC111430397 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 5.8e-27
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+LRVRLASFF GAAVASSLG Y+LQRDYKIAYDSISQKMGGLHDS+ESRISALEKLN
Sbjct: 1  MGYVLRVRLASFFTGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 60

Query: 87 QNDGSQHVQRAE 99
          QNDGSQHVQ AE
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Carg13992 vs. ExPASy TrEMBL
Match: A0A6J1IFZ7 (uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.7e-29
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 22 GVVVEMGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISA 81
          G V EMGY+LRVRLASFFAGAAVASSLG Y+LQRDYKIAYDSISQKMGGLHDS+ESRISA
Sbjct: 19 GWVGEMGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISA 78

Query: 82 LEKLNQNDGSQHVQRAE 99
          LEKLNQNDGSQHVQ AE
Sbjct: 79 LEKLNQNDGSQHVQAAE 95

[Close]

BLAST of Carg13992 vs. ExPASy TrEMBL
Match: A0A6J1C8U6 (uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009377 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.1e-27
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+LRVRLASFFAGAAVASSLG Y+LQRDYKIAYDSISQKMGGLHDSLESRISALEKLN
Sbjct: 1  MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60

Query: 87 QNDGSQHVQRAE 99
          QNDGSQHV  AE
Sbjct: 61 QNDGSQHVHTAE 72

[Close]

BLAST of Carg13992 vs. ExPASy TrEMBL
Match: A0A6J1E8L7 (uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC111430397 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.8e-27
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+LRVRLASFF GAAVASSLG Y+LQRDYKIAYDSISQKMGGLHDS+ESRISALEKLN
Sbjct: 1  MGYVLRVRLASFFTGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 60

Query: 87 QNDGSQHVQRAE 99
          QNDGSQHVQ AE
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Carg13992 vs. ExPASy TrEMBL
Match: A0A1S3AUK7 (uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.0e-26
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+LRVR+ASFFAGAAVASSLG Y+LQRDYKIAYDSIS KMGGLHDS+ SRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSMGSRISALEKLN 60

Query: 87 QNDGSQHVQRAE 99
          QNDGSQHVQ AE
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Carg13992 vs. ExPASy TrEMBL
Match: A0A0A0KJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138470 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-25
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+LRVR+ASFFAGAAVASSLG Y+LQRDYKIAYDSIS KMGGLHDSL SRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60

Query: 87 QNDGSQHVQRAE 99
          +ND SQHVQ AE
Sbjct: 61 KNDSSQHVQAAE 72

[Close]

BLAST of Carg13992 vs. TAIR 10
Match: AT5G53650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-16
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
          MGY+ RVRLASFFAGAA AS +G  VL +DYK+A++SISQ+    HDSL+ RIS LE L 
Sbjct: 1  MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query: 87 QNDGSQHVQRAE 99
          Q++  Q  +  E
Sbjct: 61 QSEAPQLAETTE 72

The following BLAST results are available for this feature:

BLAST of Carg13992 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035773.1	3.6e-45	100.00	hypothetical protein SDJN02_02571, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022974358.1	1.8e-28	90.91	uncharacterized protein LOC111472986 [Cucurbita maxima]	[more]
XP_023551615.1	2.0e-27	93.06	uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo]	[more]
XP_022138131.1	4.4e-27	93.06	uncharacterized protein LOC111009377 [Momordica charantia]	[more]
XP_022922390.1	5.8e-27	91.67	uncharacterized protein LOC111430397 [Cucurbita moschata]	[more]

BLAST of Carg13992 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13992 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IFZ7	8.7e-29	90.91	uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986...	[more]
A0A6J1C8U6	2.1e-27	93.06	uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1E8L7	2.8e-27	91.67	uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC1114303...	[more]
A0A1S3AUK7	4.0e-26	88.89	uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=...	[more]
A0A0A0KJB2	3.4e-25	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138470 PE=4 SV=1	[more]

BLAST of Carg13992 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53650.1	3.7e-16	56.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..98
None	No IPR available	PANTHER	PTHR34970	ABC TRANSPORTER A FAMILY PROTEIN	coord: 27..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13992-RA	Carg13992-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane