Carg13991 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13991
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich splicing factor SR34A-like
Location	Carg_Chr02: 6700510 .. 6705217 (+)
RNA-Seq Expression	Carg13991
Synteny	Carg13991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGCGGATCTCCAGCACGGAAGGCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGATCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCAGTTTCCCAGTCTTTGGTATGTTGTTTTCGTTAGTCGTTACTGCTTTTAATTACCGTATAATCAAACGGCGCTCATATGCGTGCTGTGGAGGAATATGATTAGTCAGACTTGTCCAATCTTGGTGGGTAGAACGTTCGCAATCTTGGATTTGCTTTTTTCTCTTTTTGTGTTCTTCATCTGGACTAGGGTGCGGCATTAGTGGATAAGTTTTGTTGAATTTAGTATTATGTGCTTGATTACTTTTATGTTTGCGTTCTCTCGGCGTGTTAAATGGACAACACCTCGTGCTGAATTATTTCACACACTGAAGCAGCTGAGTCGGTGGTTGAAATTTGATTTCTGCTTTCCTCCTAGTTTACTTCCATTGGGCTGTTGTCGTTGTTATTAATACAACACTGTAGTGGTTGGTGAACTTTAATCTAGATGCCTTTACTTAGACCTTTGGAACTGAGAAAATAGTCTACTGTGTTAGCACCTTTATTACGTTTTAAACTCGTTCCTCTTATTTCTGTAAATATGTTGATTCAAGATTGAATACACTTATCAATAACAGTATTAACCAACGTTTTGTTACCACCCAATATTAATAAATTGGCACGGAAGTCTGAATTTTTCTGTTCTTAATATCACTTCTGTGCATTCCCTGTACTGAATTGGTGTTACAATTTTCTTCAATTCATGTCCTGTCAGTTGGGATTTATTTACGTGAAGTAAAAGGGACCCGGCTTGTTAAATTCTGTTTCCATTTTGTTAATTGATATAACATTATGGTATTTCTATTTTGTTTTTTATGTGGAGTTCTCCCACTGACGACCTTAGATAATGATGTTGCACCAAGAGTATTAACACTAATGTTTTATATGACCACGTTCTTAAATATGTTGATAAGAAAGGCAGTAAACTTTTGCACCGTTCCTCTTTGGAATCGGATGCAACATAATTGAGGATTTCACCGATCATCTAAAGTTAATCCACAGAGGACATCCTGCATATTTTTTCAGGGTTGCTTTCTCAATGATGTTAAGAGAGATGAGTAAGGTAAAATTAATCATGTATGTCACTCTTGCCTCATCTCATGACACACATGCTTTCTTTATGATAGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAAAGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATGGAGGATTGCTCTCTTGGTTTGCTTTGTTGTTTTTGGTTCTACCTTATTTTAAGAGTAAAGTTGTTGATACAGATGGCAATTGTGGTAGAAGATGGTTGTTCTATCCTTTTGATGATTCATTTAATAGATGTATGATGTTATGACATAACATGTGCAGGAATAATATTTCAAACGCTCGGACTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGGTATATATTTTTAATCGTAGCATTTTTTTATTTTTTATCACGGTGTCTATGAGAAAATTGTTATTTTCTCTTTTCATATTTTTAATTTTGAATGCTATTCTTAATTATTTTATTTTTCTTAGTGGGATGTACATTACAATGGTGATTTACGGTCACTCAATCCTATTTTGATTTTTGGTTCAGAAAGAAAATCAATTAGATGTATTTTGTGGCTCATGCATATCTAAGGTTTAATTTTTGTGATATGGAGGCTACATGATTGATAGTTCCTTTGGCAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGGTATTGCTTTTGTTCTTTAGTTTGTATCTACTTTTAGCTGCATTTGTCAAACTATTTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAATGTTAGGGATGCAGAAGATGCCATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTATCAACTACGTCTTCCTTTTGCTTTACTTCCTGGTCCTATTTTTATTTTATTTTATTAATATTTTCAGTTCTTTAATAGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGGGGGTATATATGATGCATCCTTATAAGGAAGCGTGATACCGACAATTTCCCACGTGTAATATCCATTAGATTCATATTAATTTCAATGGTCTAATGAATGTTTCATTTCCCTCACAGTTATTGTACGGGGACTCCCATCTTCTGCCTCTTGGCAGGATTTGAAGGTGCTAGAGTCTTTATTGTTTAATGAAAGATGAAGTGTTTCTTTTATTGGACCATGTTGGTGACTTTACTGGTGTAATGCTTTCAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGTTTAATCCTTATCTTTGATATTGTAATAATAACTGCTATTGTTTTTTTCTTTTTCTCTCTTTACAAGTTTCAACAAACTTCAGAACCTGAAATTTCTTCGCATTGATTTGATAATTAGATAAATATTTACCATTTGAAGTAAATGTGTCCAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTGTAAGTTTTTCTGTAAGCGTGTTTCATCAGAAGTCCTGTATTATTTCAATTTGACTACTAATGTGTTTTTGTTATTTAGATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTACCTTAACCTTTTTTCTCTTGCCATAGTTAATTATTTTCAATTAACCTACTATTGTGCTGTTTTCATTTACAGCCTAGCCTCTTTCAGTGAGCATTTTAAGGAACTGGATTTGGTTTTTTTATGTCACTTGTGTTTGTGGATTACATTTGGTTGCAGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCAGAAGCCATAGTAGGAGCCGGAGCCGGAGCCGGAGCCGAAGTGCGAGGCGAAATAGGAGGTACCAGCTTTTTCTGTTTTACTGTTATCACTCTCACGCCCTCATTATTCTTTATAATGTTTTCTTGTACCATGCAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGGTACCTGTGGCCTCTGCGTGTGTGTGTGTGTGTGTTTTCCTGTGTGTGGATTTTCTCAAGAAATTAAGAAATAATGTTTGACATACATTTTCTACTAAATATGCAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGTATGCAACGTCCAGTTTTAATGCTTCAAAAGCTGTAGACTTCATATTAATCTATTTATACTCATGGTATATAGAGCTATCTAATTGAATGATATGCGTCAATGGGTAGTGGTATTAAGAAAGAACAACCTTTGGATGAAGGTGTAGAATGAGCATGTTTGTTTTATGGTGTAGGTCATTGTTAGTTTTGTTGTTATTGGTGTCTGGGGTAGTTGCCAATGGGAACGGTAGAACCCATGATGGCGTTTTGTTCCGAATGAATCTCAATATTAGCCTTTATATTATGAACCATGGGTATGTCACTCTAGTTCGAGCATCTCGTGATGGTTCTAGATAACTAAATGTGATAATGTCATGGTACACTTAAGTTTTTTGGACACCTAAGTTACTAAAAATTTCGCCTGTCATTTCCATCCTTAGATTAAAGCTCACTAGATAGTTCGAATTTAGTGAAAGTAATGGAAATACGTGGTGTAAGTATTTGTGGTTCATTATGCTGCGGAATGAGATTAGCCCTAGTCTCTTTCCTGATTTCAAAACAATTCCTTAGGTACGATGAGTGAGTTAACTTAAGTATAGTTCAACTTATTAGTAGAATTGTCTTTGTACTAGACTCAAACGATGATTTGATTAGATTAGGGTCATACAACTGCACTAACCGAAGCTGAAATCTCTTTTTCAGGCACGAGAAGGTAGCGGATGATAATACGAAGCTATAATGATAGGAACGGTTGTTATAATATCGAGAATGCAACATTCTGTTGGATTTCATGTTGGTTTAGGACCTATTATATTATGCTCGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGGTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTGACCTACCATCATTTTGTTTGGAGACATCTTTAGGTATTTGCATGTCTTAAGTTTATTGCTCACTGGTTTTGGAATTTTTTTTTTTTT

mRNA sequence

TCCTTCAGTCTCGCGCCTGTGGCTGTGGCATGTTATCCTCTGCCACGACCTAACCCTAAACCCTTCGTCATCAATTCCGGTCGCTGCAGGCGGATCTCCAGCACGGAAGGCAAGCGCCAGTTCTTCTTTGAGTCCTTGCTGATCCGCGGTTCCAGGTTTTGGTGCAGTCTAGTTCGTCAGTTTCCCAGTCTTTGGTATGTTGTTTTCGTTAGTCGTTACTGCTTTTAATTACCGTATAATCAAACGGCGCTCATATGCGTGCTGTGGAGGAATATGATTAGTCAGACTTGTCCAATCTTGGTGGGTAGAACGTTCGCAATCTTGGATTTGCTTTTTTCTCTTTTTGTGTTCTTCATCTGGACTAGGGTGCGGCATTAGTGGATAAGTTTTGTTGAATTTAGTATTATGTGCTTGATTACTTTTATGTTTGCGTTCTCTCGGCGTGTTAAATGGACAACACCTCGTGCTGAATTATTTCACACACTGAAGCAGCTGAGTCGGTGGTTGAAATTTGATTTCTGCTTTCCTCCTAGTTTACTTCCATTGGGCTGTTGTCGTTGTTATTAATACAACACTGTAGTGGTTGGTGAACTTTAATCTAGATGCCTTTACTTAGACCTTTGGAACTGAGAAAATAGTCTACTGTGTTAGCACCTTTATTACGTTTTAAACTCGTTCCTCTTATTTCTGTAAATATGTTGATTCAAGATTGAATACACTTATCAATAACAGTATTAACCAACGTTTTGTTACCACCCAATATTAATAAATTGGCACGGAAGTCTGAATTTTTCTGTTCTTAATATCACTTCTGTGCATTCCCTGTACTGAATTGGTGTTACAATTTTCTTCAATTCATGTCCTGTCAGTTGGGATTTATTTACGTGAAGTAAAAGGGACCCGGCTTGTTAAATTCTGTTTCCATTTTGTTAATTGATATAACATTATGGTATTTCTATTTTGTTTTTTATGTGGAGTTCTCCCACTGACGACCTTAGATAATGATGTTGCACCAAGAGTATTAACACTAATGTTTTATATGACCACGTTCTTAAATATGTTGATAAGAAAGGCAGTAAACTTTTGCACCGTTCCTCTTTGGAATCGGATGCAACATAATTGAGGATTTCACCGATCATCTAAAGTTAATCCACAGAGGACATCCTGCATATTTTTTCAGGGTTGCTTTCTCAATGATGTTAAGAGAGATGAGTAAGGTAAAATTAATCATGTATGTCACTCTTGCCTCATCTCATGACACACATGCTTTCTTTATGATAGATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAAAGGGAATGGGAGAATCCTTGTGGAGTTATGGGTATTTTTTTTAAAAAGGAGATGCTTGATCACTCTCAGAAAAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATGGAGGATTGCTCTCTTGGAATAATATTTCAAACGCTCGGACTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCCATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCCTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCAGAAGCCATAGTAGGAGCCGGAGCCGGAGCCGGAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGCACGAGAAGGTAGCGGATGATAATACGAAGCTATAATGATAGGAACGGTTGTTATAATATCGAGAATGCAACATTCTGTTGGATTTCATGTTGGTTTAGGACCTATTATATTATGCTCGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGGTTGAGTTGTATGGATATCTTTCAAATCCTTCTCATGTATTTGACCTGACCTACCATCATTTTGTTTGGAGACATCTTTAGGTATTTGCATGTCTTAAGTTTATTGCTCACTGGTTTTGGAATTTTTTTTTTTTT

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCCCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAGAGAGAATGAAATTGAAGATTTGTTCTACAAGTATGGTCGAATTTTGGATATTGAATTGAAGATTCCGCCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCCATTCGAGGTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCATCGTAGCAATTATGGTGGCAGTGGTGGTGGTGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGGGGACTCCCATCTTCTGCCTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCATGACAGCGAAGGGACATTTGGGACTGTTGATTATACAAACTATGACGACATGAAGTATGCTATTCGAAAACTTGACGATACAGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTACGAAGGCAGTCCCACTAGGGGTCGGAGCAGAAACAGAAGCAGAAGCAGAAGCCATAGTAGGAGCCGGAGCCGGAGCCGGAGCCGAAGTGCGAGGCGAAATAGGAGCAAATCAGCCGAACAATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCTATCCCCTGTTAAATCTTCAAGACGACGTTCAAAATCAAGATCTGGATCACCACGTGAGGCACGAGAAGGTAGCGGATGA

Protein sequence

MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG

Homology

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BLAST of Carg13991 vs. NCBI nr
Match: KAG7035774.1 (Serine/arginine-rich splicing factor SR34A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 506.1 bits (1302), Expect = 1.8e-139
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180

Query: 181 RAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRS 240
           RAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRS
Sbjct: 181 RAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRS 240

Query: 241 LSPVKSSRRRSKSRSGSPREAREGSG 267
           LSPVKSSRRRSKSRSGSPREAREGSG
Sbjct: 241 LSPVKSSRRRSKSRSGSPREAREGSG 266

[Close]

BLAST of Carg13991 vs. NCBI nr
Match: XP_022996414.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996416.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996417.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima])

HSP 1 Score: 496.9 bits (1278), Expect = 1.1e-136
Identity = 264/268 (98.51%), Postives = 265/268 (98.88%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180

Query: 181 RAYIRVKKYEGSPTRGRSRN--RSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRS 240
           RAYIRVKKYEGSPTRGRSRN  RSRSRS SRSRSRSRSRSA+RNRSKSAEQSVSRSVSRS
Sbjct: 181 RAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSRSVSRS 240

Query: 241 RSLSPVKSSRRRSKSRSGSPREAREGSG 267
           RSLSPVKSSRRRSKSRSGSPREAREGSG
Sbjct: 241 RSLSPVKSSRRRSKSRSGSPREAREGSG 268

[Close]

BLAST of Carg13991 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496.9 bits (1278), Expect = 1.1e-136
Identity = 265/271 (97.79%), Postives = 265/271 (97.79%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRSEYRV 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120

Query: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSV 240
           KNPWARAYIRVKKYEGSPTRGRSRNRSRSRS SRSRSRSRSRSARRNRSKSAEQSVSRSV
Sbjct: 181 KNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSRSV 240

Query: 241 SRSRSLSPVKSSRRRSKSRSGSPREAREGSG 267
           SRSRSLSPVKSSRRRSKSRSGSPREAREGSG
Sbjct: 241 SRSRSLSPVKSSRRRSKSRSGSPREAREGSG 271

[Close]

BLAST of Carg13991 vs. NCBI nr
Match: XP_022958290.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958291.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958292.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958294.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958295.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata])

HSP 1 Score: 492.7 bits (1267), Expect = 2.1e-135
Identity = 261/266 (98.12%), Postives = 261/266 (98.12%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180

Query: 181 RAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRS 240
           RAYIRVKKYEGSPTRGRSRNRSR    SRSRSRSRSRS RRNRSKSAEQSVSRSVSRSRS
Sbjct: 181 RAYIRVKKYEGSPTRGRSRNRSR----SRSRSRSRSRSVRRNRSKSAEQSVSRSVSRSRS 240

Query: 241 LSPVKSSRRRSKSRSGSPREAREGSG 267
           LSPVKSSRRRSKSRSGSPREAREGSG
Sbjct: 241 LSPVKSSRRRSKSRSGSPREAREGSG 262

[Close]

BLAST of Carg13991 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.1 bits (1263), Expect = 6.0e-135
Identity = 265/275 (96.36%), Postives = 265/275 (96.36%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYK----YGRILDIELKIPPRPPCYCFVEFENVR 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYK    YGRILDIELKIPPRPPCYCFVEFENVR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS-----GGGGGRFGVSKRS 120
           DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGS     GGGGGRFGVSKRS
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD
Sbjct: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSV 240
           DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRS SRSRSRSRSRSARRNRSKSAEQSV
Sbjct: 181 DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV 240

Query: 241 SRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG 267
           SRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG
Sbjct: 241 SRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG 275

[Close]

BLAST of Carg13991 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 2.8e-103
Identity = 213/299 (71.24%), Postives = 238/299 (79.60%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHR-------SNYGGSGGGGG--RFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R       S YGG GGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEG------SPTRGRSRNRSRS------RSHSRSRSRSRSRSA 240
           DTEF+NPWAR +IRVKKYE       SP+R RSR+RSRS      RSHSRSRS SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS-------------SRRRSKSRSGSPREAREGS 266
           R++ SKS  +S+SRS+S+SRS SP K              SR RS+S S SP + REGS
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPKVREGS 299

[Close]

BLAST of Carg13991 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.4e-78
Identity = 176/284 (61.97%), Postives = 213/284 (75.00%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGR-------FGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++ G G GGGR        G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRS---K 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRS  RS SRSRSRS  R+RS   K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 SAEQSVSRSVSRS---RSLSPVKSSRR-RSKSRSGSPREAREGS 266
           S+ +S ++S SRS   RS S   S RR RS+SRS  P   +EGS
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGS 283

[Close]

BLAST of Carg13991 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.5e-76
Identity = 172/272 (63.24%), Postives = 203/272 (74.63%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRTIYVGNLP DIRE E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--------GGSGGGGGRFGVSKRSE 120
           AI GRDGY+FDG  LRVELAHGGR  SS D R +Y        GG  GGG   G S+RSE
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSE 120

Query: 121 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDD 180
           YRV+V GLPSSASWQDLKDHMRK G+VCF++V  D  GT G VDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 181 TEFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSA 240
           TEF+N ++  Y+RV++Y+      SP+RGRS ++SRSR  S SRSRSRSRS  ++RS  A
Sbjct: 181 TEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 EQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPR 260
            +S+ RS ++S S SP   SR RSKSRS SPR
Sbjct: 241 -KSLRRSPAKSTSRSP--RSRSRSKSRSLSPR 265

[Close]

BLAST of Carg13991 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.6e-72
Identity = 168/266 (63.16%), Postives = 202/266 (75.94%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++RTIYVGNLP DIR+ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGR--GPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVR 120
           AI GRDGY+FDGCRLRVE+AHGGR   PS   + S+Y  S         S+RS+YRV+V 
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------APSRRSDYRVLVT 120

Query: 121 GLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNP 180
           GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G VDY+NYDDMKYAIRKLD TEF+N 
Sbjct: 121 GLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNA 180

Query: 181 WARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRS---ARRNRSKSAEQSV---S 240
           ++ AYIRV++YE   +R  SR+   S+S+ RSRSRSR  S   + ++RS S  +S+   S
Sbjct: 181 FSSAYIRVREYE---SRSVSRSPDDSKSY-RSRSRSRGPSCSYSSKSRSVSPARSISPRS 240

Query: 241 RSVSRSRSL-SPVKSSRRRSKSRSGS 258
           R +SRSRSL S V  S+ RSKSRS S
Sbjct: 241 RPLSRSRSLYSSVSRSQSRSKSRSRS 256

[Close]

BLAST of Carg13991 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 3.2e-54
Identity = 140/245 (57.14%), Postives = 168/245 (68.57%), Query Frame = 0


Query: 9   IYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRGRDGY 68
           IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  NFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGG--------GRFG-VSKRSEYRVIVRG 128
           ++DG RLRVE    GRG          GG GGGG        GR+G  S+RSEYRVIV G
Sbjct: 77  DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136

Query: 129 LPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFK-NP 188
           LP S SWQDLKDHMR+AGDVC+A+V  D  GT G V++   +DM YA+RKLD+T+F+ + 
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHE 196

Query: 189 WARAYIRVKKYEG--SPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQ-SVSRSV 241
              AYIRV K +G  SP+ GRSR+RSRSRS SRSRS +RSRS    RS+ + Q S   S 
Sbjct: 197 GETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRGSPQYSPRHSR 256

[Close]

BLAST of Carg13991 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.3e-137
Identity = 264/268 (98.51%), Postives = 265/268 (98.88%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180

Query: 181 RAYIRVKKYEGSPTRGRSRN--RSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRS 240
           RAYIRVKKYEGSPTRGRSRN  RSRSRS SRSRSRSRSRSA+RNRSKSAEQSVSRSVSRS
Sbjct: 181 RAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSRSVSRS 240

Query: 241 RSLSPVKSSRRRSKSRSGSPREAREGSG 267
           RSLSPVKSSRRRSKSRSGSPREAREGSG
Sbjct: 241 RSLSPVKSSRRRSKSRSGSPREAREGSG 268

[Close]

BLAST of Carg13991 vs. ExPASy TrEMBL
Match: A0A6J1H330 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN=LOC111459559 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.9e-136
Identity = 261/266 (98.12%), Postives = 261/266 (98.12%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120
           AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGRFGVSKRSEYRVIVRGL 120

Query: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180
           PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA
Sbjct: 121 PSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWA 180

Query: 181 RAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAEQSVSRSVSRSRS 240
           RAYIRVKKYEGSPTRGRSRNRSR    SRSRSRSRSRS RRNRSKSAEQSVSRSVSRSRS
Sbjct: 181 RAYIRVKKYEGSPTRGRSRNRSR----SRSRSRSRSRSVRRNRSKSAEQSVSRSVSRSRS 240

Query: 241 LSPVKSSRRRSKSRSGSPREAREGSG 267
           LSPVKSSRRRSKSRSGSPREAREGSG
Sbjct: 241 LSPVKSSRRRSKSRSGSPREAREGSG 262

[Close]

BLAST of Carg13991 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 7.4e-123
Identity = 245/281 (87.19%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---------------GGSGGGGGRF 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y               GG GGGGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSK 240
           AIRKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRS SRSRSRSRSR+ARRNRSK
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240

Query: 241 SAE-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 266
           SAE +SVSRSVSRSRS SP+KSSR RSKSRSGSPR+AREGS
Sbjct: 241 SAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 281

[Close]

BLAST of Carg13991 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.8e-122
Identity = 244/277 (88.09%), Postives = 252/277 (90.97%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY------------GGSGGGGGRFGVS 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y            GG GGGGGRFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGRFGVS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIR 180
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS D+EGTFG VDYTNYDDMKYAIR
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRSKSAE 240
           KLDDTEFKNPWARAYIRVKKY+GSPTR RSR+RSRSR  SRSRS+SRSRSARRNRSKS E
Sbjct: 181 KLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSR--SRSRSQSRSRSARRNRSKSVE 240

Query: 241 QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 266
           +SVSRSVSRSRS SPVKSSR RSKSRSGSPRE REGS
Sbjct: 241 RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGREGS 275

[Close]

BLAST of Carg13991 vs. ExPASy TrEMBL
Match: A0A7N2RA70 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 9.7e-115
Identity = 231/292 (79.11%), Postives = 247/292 (84.59%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRTIYVGNLPSDIRE E+EDLF+KYGRILDIELKIPPRPPCYCFVEF+N RDAED
Sbjct: 1   MSGRFSRTIYVGNLPSDIREWEVEDLFHKYGRILDIELKIPPRPPCYCFVEFDNARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGG------------RFGVS 120
           AI+GRDGYNFDGCRLRVELAHGGRGPSSSD R +YGG GGGGG            RFG+S
Sbjct: 61  AIKGRDGYNFDGCRLRVELAHGGRGPSSSDRRGSYGGGGGGGGGRSGDGGGGGGSRFGIS 120

Query: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIR 180
           + SEYRV+VRGLPSSASWQDLKDHMRKAGDVCFAEVS D EGTFG VDYTNYDDMKYAIR
Sbjct: 121 RHSEYRVVVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDGEGTFGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFKNPWARAYIRVKKYEGSP----------TRGRSRNRSRSRSHSRSRSRSRSRS 240
           KLDDTEF+NPWARAYIRVKKYEGSP          +R RSR+RSRSRS SRSRSRSRSRS
Sbjct: 181 KLDDTEFRNPWARAYIRVKKYEGSPPRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRS 240

Query: 241 ARRNRSKSAEQSVSRSVSRSRSLSPVK----SSRRRSKSRSGSPREAREGSG 267
            RR+RS S E+S+SRSVSRSRS SPVK     SR RS+SRSGSPR+AR GSG
Sbjct: 241 VRRDRSVSLERSISRSVSRSRSASPVKPSRPRSRSRSRSRSGSPRQARSGSG 292

[Close]

BLAST of Carg13991 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 376.3 bits (965), Expect = 2.0e-104
Identity = 213/299 (71.24%), Postives = 238/299 (79.60%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHR-------SNYGGSGGGGG--RFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R       S YGG GGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEG------SPTRGRSRNRSRS------RSHSRSRSRSRSRSA 240
           DTEF+NPWAR +IRVKKYE       SP+R RSR+RSRS      RSHSRSRS SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS-------------SRRRSKSRSGSPREAREGS 266
           R++ SKS  +S+SRS+S+SRS SP K              SR RS+S S SP + REGS
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPKVREGS 299

[Close]

BLAST of Carg13991 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 376.3 bits (965), Expect = 2.0e-104
Identity = 213/299 (71.24%), Postives = 238/299 (79.60%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHR-------SNYGGSGGGGG--RFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R       S YGG GGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEG------SPTRGRSRNRSRS------RSHSRSRSRSRSRSA 240
           DTEF+NPWAR +IRVKKYE       SP+R RSR+RSRS      RSHSRSRS SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKS-------------SRRRSKSRSGSPREAREGS 266
           R++ SKS  +S+SRS+S+SRS SP K              SR RS+S S SP + REGS
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPKVREGS 299

[Close]

BLAST of Carg13991 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 372.5 bits (955), Expect = 2.9e-103
Identity = 201/266 (75.56%), Postives = 224/266 (84.21%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSR+IYVGNLP DIRE+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHR-------SNYGGSGGGGG--RFGVSKRS 120
           AI+GRDGYN DGCRLRVELAHGGRG SSSD R       S YGG GGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD 180
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+ DS+GT+G VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DTEFKNPWARAYIRVKKYEG------SPTRGRSRNRSRS------RSHSRSRSRSRSRSA 240
           DTEF+NPWAR +IRVKKYE       SP+R RSR+RSRS      RSHSRSRS SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 RRNRSKSAEQSVSRSVSRSRSLSPVK 246
           R++ SKS  +S+SRS+S+SRS SP K
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDK 266

[Close]

BLAST of Carg13991 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 294.3 bits (752), Expect = 1.0e-79
Identity = 176/284 (61.97%), Postives = 213/284 (75.00%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGR-------FGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++ G G GGGR        G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRS---K 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRS  RS SRSRSRS  R+RS   K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 SAEQSVSRSVSRS---RSLSPVKSSRR-RSKSRSGSPREAREGS 266
           S+ +S ++S SRS   RS S   S RR RS+SRS  P   +EGS
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGS 283

[Close]

BLAST of Carg13991 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 294.3 bits (752), Expect = 1.0e-79
Identity = 176/284 (61.97%), Postives = 213/284 (75.00%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SRT+YVGNLP DIRE E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGR-------FGVSKRSEY 120
           AI GRDGY+FDG RLRVELAHGGR  SS D R ++ G G GGGR        G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V  D+ GT G VDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWARAYIRVKKYEG-----SPTRGRSRNRSRSRSHSRSRSRSRSRSARRNRS---K 240
           EF+N ++  Y+RV++Y+      SP+RGRS ++SRSRS  RS SRSRSRS  R+RS   K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 241 SAEQSVSRSVSRS---RSLSPVKSSRR-RSKSRSGSPREAREGS 266
           S+ +S ++S SRS   RS S   S RR RS+SRS  P   +EGS
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGS 283

The following BLAST results are available for this feature:

BLAST of Carg13991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035774.1	1.8e-139	100.00	Serine/arginine-rich splicing factor SR34A [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022996414.1	1.1e-136	98.51	serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415...	[more]
XP_023533518.1	1.1e-136	97.79	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_022958290.1	2.1e-135	98.12	serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_0229582...	[more]
XP_023533513.1	6.0e-135	96.36	serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp...	[more]

BLAST of Carg13991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVS6	2.8e-103	71.24	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	1.4e-78	61.97	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	8.5e-76	63.24	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	2.6e-72	63.16	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q7SXP4	3.2e-54	57.14	Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV...	[more]

BLAST of Carg13991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K1U7	5.3e-137	98.51	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H330	9.9e-136	98.12	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KLR9	7.4e-123	87.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
A0A6J1C7M8	2.8e-122	88.09	serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A7N2RA70	9.7e-115	79.11	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Carg13991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49430.1	2.0e-104	71.24	SER/ARG-rich protein 34A	[more]
AT3G49430.3	2.0e-104	71.24	SER/ARG-rich protein 34A	[more]
AT3G49430.2	2.9e-103	75.56	SER/ARG-rich protein 34A	[more]
AT1G02840.1	1.0e-79	61.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	1.0e-79	61.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 114..183 e-value: 5.1E-7 score: 39.3 coord: 8..78 e-value: 3.1E-22 score: 89.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..76 e-value: 8.2E-19 score: 67.2 coord: 115..177 e-value: 9.0E-12 score: 44.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.790073
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 113..191 score: 9.848526
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..110 e-value: 1.5E-26 score: 95.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 112..190 e-value: 3.5E-23 score: 83.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..242
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..264
None	No IPR available	PANTHER	PTHR23147:SF63	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 2..264
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 8..79 e-value: 1.43321E-44 score: 143.369
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 113..188 e-value: 1.36167E-42 score: 138.408
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13991-RA	Carg13991-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding