
Carg13957 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGCGAGCAGACACAAGAGTGAGACGGGGTTAATCGATTCCACGGGAAAGCTCGAATGGAGGATCCAAAGACTCAGATGAAAGATTCTTCTTCAGGTATTGCCAGTTTTTTTCACTGTTCTTATCAACTGCAAGTAGTGATTATGTATTGATTGCTACGATATTCTGTGTGTCTCCTCAAGAAGCTGTTTCTAAAACATAATCAGCTTGAAATTGTTGCATTGAGTAAAGATCATCGAGTGGCGTACAAATTGATAATGTATTTTAGCTTTTCCAGTGATTGATGTCGGCGATGTTGTGTTATGAAGGTAGAAAACTCTAAGCAGCCCGTATTTTCGTTGATTGTTGACGCTGATTGATTTCCACGGTATTATAAGGAAATGTTTGATTTCAAAGCACTGTTATCAATTTTTATACATATATATATATATATATATATATATATATATATATTTAGGATTAGTCGATTCAATGGGAGGAATCTGCTGTCATTTCTGAAGAGATACTTTTCCCTCTGTGTTTCATAGAGCAAATTGTTATCAAATTGCATGAATCTCGAGCTTATGGTTGTTTAGGTGTTGCTTCAATTGTTTCTGAGGAGGTTTTTAAGATCAGAAACGACTTCTCTGTCGTGGTTTGATTTTGCTTTTGAAGATTCTAGTTGACTGACAATTATCTCTTCTTTCTCTTTGTGTGTAACACCTACTTTGAGAAGAAGAAGATGCAAGATCGATCAATATTTTTGAGAGACTTAAAGAAGAGGTGGAGGCTGTGATTCACTCTCATGAATCACCACGCCATCACAAAGAAACACATGGAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCATGTTTGAAAGAGTCAAGGAAGAGATTGAGGCCCTCGTGGAAACGATTCATCCCAAGAAGGATTCGAGCAATCATTAGCTTTCTTTAAAGCAAGGAAGAGGGTTGATTGACACCATGCTGTTACAAGGTTTGCTTTCTTTAACAATGCTTAATTTCTTTTATGATGCAACTCCATGCTATCTAGGTCGCTATTTGAAAATATTGGTCGGAAAATATCATGTTTGAAGACAAATTGACATGAACTTAGACTATTTCCACTGTTTCTGGTATTTGTTTTGAAGTATGTAATGTACATCTTGTCAAATTATCCCCAATATTAGGCCACACATTCTAGCCTTAATTTGAAAG AGCGAGCAGACACAAGAGTGAGACGGGGTTAATCGATTCCACGGGAAAGCTCGAATGGAGGATCCAAAGACTCAGATGAAAGATTCTTCTTCAGAAGAAGATGCAAGATCGATCAATATTTTTGAGAGACTTAAAGAAGAGGTGGAGGCTGTGATTCACTCTCATGAATCACCACGCCATCACAAAGAAACACATGGAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCATGTTTGAAAGAGTCAAGGAAGAGATTGAGGCCCTCGTGGAAACGATTCATCCCAAGAAGGATTCGAGCAATCATTAGCTTTCTTTAAAGCAAGGAAGAGGGTTGATTGACACCATGCTGTTACAAGGTTTGCTTTCTTTAACAATGCTTAATTTCTTTTATGATGCAACTCCATGCTATCTAGGTCGCTATTTGAAAATATTGGTCGGAAAATATCATGTTTGAAGACAAATTGACATGAACTTAGACTATTTCCACTGTTTCTGGTATTTGTTTTGAAGTATGTAATGTACATCTTGTCAAATTATCCCCAATATTAGGCCACACATTCTAGCCTTAATTTGAAAG ATGGAGGATCCAAAGACTCAGATGAAAGATTCTTCTTCAGAAGAAGATGCAAGATCGATCAATATTTTTGAGAGACTTAAAGAAGAGGTGGAGGCTGTGATTCACTCTCATGAATCACCACGCCATCACAAAGAAACACATGGAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCATGTTTGAAAGAGTCAAGGAAGAGATTGAGGCCCTCGTGGAAACGATTCATCCCAAGAAGGATTCGAGCAATCATTAG MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGMFERVKEEIEALVETIHPKKDSSNH Homology
BLAST of Carg13957 vs. NCBI nr
Match: KAG6593528.1 (hypothetical protein SDJN03_13004, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025872.1 hypothetical protein SDJN02_12370 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Carg13957 vs. NCBI nr
Match: XP_023515027.1 (uncharacterized protein LOC111779175 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39 Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of Carg13957 vs. NCBI nr
Match: XP_023515025.1 (uncharacterized protein LOC111779175 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.8 bits (421), Expect = 8.8e-38 Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0
BLAST of Carg13957 vs. NCBI nr
Match: XP_023000452.1 (uncharacterized protein LOC111494718 isoform X2 [Cucurbita maxima]) HSP 1 Score: 164.1 bits (414), Expect = 5.7e-37 Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of Carg13957 vs. NCBI nr
Match: XP_023000451.1 (uncharacterized protein LOC111494718 isoform X1 [Cucurbita maxima]) HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35 Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1KDN6 (uncharacterized protein LOC111494718 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494718 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37 Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1KFX0 (uncharacterized protein LOC111494718 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494718 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 6.8e-36 Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1CT17 (uncharacterized protein LOC111014044 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014044 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 5.1e-31 Identity = 70/91 (76.92%), Postives = 83/91 (91.21%), Query Frame = 0
BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1CRC8 (uncharacterized protein LOC111014044 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014044 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30 Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 0
BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A0A0KAY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450740 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28 Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Carg13957 vs. TAIR 10
Match: AT1G72690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 87.8 bits (216), Expect = 4.9e-18 Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0
BLAST of Carg13957 vs. TAIR 10
Match: AT5G57000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 2.3e-15 Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0
BLAST of Carg13957 vs. TAIR 10
Match: AT5G57000.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14 Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0
BLAST of Carg13957 vs. TAIR 10
Match: AT1G17490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 57 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09 Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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