Carg13957 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13957
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMyb-like protein
LocationCarg_Chr08: 4242636 .. 4243854 (+)
RNA-Seq ExpressionCarg13957
SyntenyCarg13957
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCGAGCAGACACAAGAGTGAGACGGGGTTAATCGATTCCACGGGAAAGCTCGAATGGAGGATCCAAAGACTCAGATGAAAGATTCTTCTTCAGGTATTGCCAGTTTTTTTCACTGTTCTTATCAACTGCAAGTAGTGATTATGTATTGATTGCTACGATATTCTGTGTGTCTCCTCAAGAAGCTGTTTCTAAAACATAATCAGCTTGAAATTGTTGCATTGAGTAAAGATCATCGAGTGGCGTACAAATTGATAATGTATTTTAGCTTTTCCAGTGATTGATGTCGGCGATGTTGTGTTATGAAGGTAGAAAACTCTAAGCAGCCCGTATTTTCGTTGATTGTTGACGCTGATTGATTTCCACGGTATTATAAGGAAATGTTTGATTTCAAAGCACTGTTATCAATTTTTATACATATATATATATATATATATATATATATATATATATTTAGGATTAGTCGATTCAATGGGAGGAATCTGCTGTCATTTCTGAAGAGATACTTTTCCCTCTGTGTTTCATAGAGCAAATTGTTATCAAATTGCATGAATCTCGAGCTTATGGTTGTTTAGGTGTTGCTTCAATTGTTTCTGAGGAGGTTTTTAAGATCAGAAACGACTTCTCTGTCGTGGTTTGATTTTGCTTTTGAAGATTCTAGTTGACTGACAATTATCTCTTCTTTCTCTTTGTGTGTAACACCTACTTTGAGAAGAAGAAGATGCAAGATCGATCAATATTTTTGAGAGACTTAAAGAAGAGGTGGAGGCTGTGATTCACTCTCATGAATCACCACGCCATCACAAAGAAACACATGGAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCATGTTTGAAAGAGTCAAGGAAGAGATTGAGGCCCTCGTGGAAACGATTCATCCCAAGAAGGATTCGAGCAATCATTAGCTTTCTTTAAAGCAAGGAAGAGGGTTGATTGACACCATGCTGTTACAAGGTTTGCTTTCTTTAACAATGCTTAATTTCTTTTATGATGCAACTCCATGCTATCTAGGTCGCTATTTGAAAATATTGGTCGGAAAATATCATGTTTGAAGACAAATTGACATGAACTTAGACTATTTCCACTGTTTCTGGTATTTGTTTTGAAGTATGTAATGTACATCTTGTCAAATTATCCCCAATATTAGGCCACACATTCTAGCCTTAATTTGAAAG

mRNA sequence

AGCGAGCAGACACAAGAGTGAGACGGGGTTAATCGATTCCACGGGAAAGCTCGAATGGAGGATCCAAAGACTCAGATGAAAGATTCTTCTTCAGAAGAAGATGCAAGATCGATCAATATTTTTGAGAGACTTAAAGAAGAGGTGGAGGCTGTGATTCACTCTCATGAATCACCACGCCATCACAAAGAAACACATGGAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCATGTTTGAAAGAGTCAAGGAAGAGATTGAGGCCCTCGTGGAAACGATTCATCCCAAGAAGGATTCGAGCAATCATTAGCTTTCTTTAAAGCAAGGAAGAGGGTTGATTGACACCATGCTGTTACAAGGTTTGCTTTCTTTAACAATGCTTAATTTCTTTTATGATGCAACTCCATGCTATCTAGGTCGCTATTTGAAAATATTGGTCGGAAAATATCATGTTTGAAGACAAATTGACATGAACTTAGACTATTTCCACTGTTTCTGGTATTTGTTTTGAAGTATGTAATGTACATCTTGTCAAATTATCCCCAATATTAGGCCACACATTCTAGCCTTAATTTGAAAG

Coding sequence (CDS)

ATGGAGGATCCAAAGACTCAGATGAAAGATTCTTCTTCAGAAGAAGATGCAAGATCGATCAATATTTTTGAGAGACTTAAAGAAGAGGTGGAGGCTGTGATTCACTCTCATGAATCACCACGCCATCACAAAGAAACACATGGAACAAGCGATGATATTGACGAGACTACACCAGCCGATGAAGTAAAGGCCCCCGGCATGTTTGAAAGAGTCAAGGAAGAGATTGAGGCCCTCGTGGAAACGATTCATCCCAAGAAGGATTCGAGCAATCATTAG

Protein sequence

MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGMFERVKEEIEALVETIHPKKDSSNH
Homology
BLAST of Carg13957 vs. NCBI nr
Match: KAG6593528.1 (hypothetical protein SDJN03_13004, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025872.1 hypothetical protein SDJN02_12370 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD 60
          MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD
Sbjct: 1  MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD 60

Query: 61 EVKAPGMFERVKEEIEALVETIHPKKDSSNH 92
          EVKAPGMFERVKEEIEALVETIHPKKDSSNH
Sbjct: 61 EVKAPGMFERVKEEIEALVETIHPKKDSSNH 91

BLAST of Carg13957 vs. NCBI nr
Match: XP_023515027.1 (uncharacterized protein LOC111779175 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1  MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD 60
          MEDPKT MKDSSSEEDARSINIFERLKEE+EAVIHSHESPRHHKETHGT DDIDETTPAD
Sbjct: 1  MEDPKTPMKDSSSEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTRDDIDETTPAD 60

Query: 61 EVKAPGMFERVKEEIEALVETIHPKKDSSNH 92
          EVKAPG+FERVKEEIEALVETIHPKKDSSNH
Sbjct: 61 EVKAPGVFERVKEEIEALVETIHPKKDSSNH 91

BLAST of Carg13957 vs. NCBI nr
Match: XP_023515025.1 (uncharacterized protein LOC111779175 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 8.8e-38
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 1  MEDPKTQMKDSSS-EEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPA 60
          MEDPKT MKDSSS EEDARSINIFERLKEE+EAVIHSHESPRHHKETHGT DDIDETTPA
Sbjct: 1  MEDPKTPMKDSSSEEEDARSINIFERLKEEMEAVIHSHESPRHHKETHGTRDDIDETTPA 60

Query: 61 DEVKAPGMFERVKEEIEALVETIHPKKDSSNH 92
          DEVKAPG+FERVKEEIEALVETIHPKKDSSNH
Sbjct: 61 DEVKAPGVFERVKEEIEALVETIHPKKDSSNH 92

BLAST of Carg13957 vs. NCBI nr
Match: XP_023000452.1 (uncharacterized protein LOC111494718 isoform X2 [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 5.7e-37
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1  MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD 60
          MEDPKT MKDSSSEEDA+SINIFERLKEE+EAVIHSHESP HHKETHGTS+DIDETTPAD
Sbjct: 1  MEDPKTPMKDSSSEEDAKSINIFERLKEEMEAVIHSHESPCHHKETHGTSNDIDETTPAD 60

Query: 61 EVKAPGMFERVKEEIEALVETIHPKKDSSN 91
          EVKAPG+FERVKEEIEALVETIHPKKDSSN
Sbjct: 61 EVKAPGVFERVKEEIEALVETIHPKKDSSN 90

BLAST of Carg13957 vs. NCBI nr
Match: XP_023000451.1 (uncharacterized protein LOC111494718 isoform X1 [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1  MEDPKTQMKDSSS-EEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPA 60
          MEDPKT MKDSSS EEDA+SINIFERLKEE+EAVIHSHESP HHKETHGTS+DIDETTPA
Sbjct: 1  MEDPKTPMKDSSSEEEDAKSINIFERLKEEMEAVIHSHESPCHHKETHGTSNDIDETTPA 60

Query: 61 DEVKAPGMFERVKEEIEALVETIHPKKDSSN 91
          DEVKAPG+FERVKEEIEALVETIHPKKDSSN
Sbjct: 61 DEVKAPGVFERVKEEIEALVETIHPKKDSSN 91

BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1KDN6 (uncharacterized protein LOC111494718 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494718 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1  MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD 60
          MEDPKT MKDSSSEEDA+SINIFERLKEE+EAVIHSHESP HHKETHGTS+DIDETTPAD
Sbjct: 1  MEDPKTPMKDSSSEEDAKSINIFERLKEEMEAVIHSHESPCHHKETHGTSNDIDETTPAD 60

Query: 61 EVKAPGMFERVKEEIEALVETIHPKKDSSN 91
          EVKAPG+FERVKEEIEALVETIHPKKDSSN
Sbjct: 61 EVKAPGVFERVKEEIEALVETIHPKKDSSN 90

BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1KFX0 (uncharacterized protein LOC111494718 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494718 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.8e-36
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1  MEDPKTQMKDSSS-EEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPA 60
          MEDPKT MKDSSS EEDA+SINIFERLKEE+EAVIHSHESP HHKETHGTS+DIDETTPA
Sbjct: 1  MEDPKTPMKDSSSEEEDAKSINIFERLKEEMEAVIHSHESPCHHKETHGTSNDIDETTPA 60

Query: 61 DEVKAPGMFERVKEEIEALVETIHPKKDSSN 91
          DEVKAPG+FERVKEEIEALVETIHPKKDSSN
Sbjct: 61 DEVKAPGVFERVKEEIEALVETIHPKKDSSN 91

BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1CT17 (uncharacterized protein LOC111014044 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014044 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.1e-31
Identity = 70/91 (76.92%), Postives = 83/91 (91.21%), Query Frame = 0

Query: 1  MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD 60
          ME+PKT +KDSSS +DA++ N+FER KEE+EA++HS++SPRHHKETHG SDDIDETTP+D
Sbjct: 1  MEEPKTVIKDSSSGKDAKAPNLFERAKEEIEAIVHSNKSPRHHKETHGRSDDIDETTPSD 60

Query: 61 EVKAPGMFERVKEEIEALVETIHPKKDSSNH 92
          EVKAPG+F RVKEEIEALV TIHPKKDS NH
Sbjct: 61 EVKAPGVFGRVKEEIEALVGTIHPKKDSDNH 91

BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A6J1CRC8 (uncharacterized protein LOC111014044 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014044 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 0

Query: 1  MEDPKTQMKDSSSE-EDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPA 60
          ME+PKT +KDSSSE +DA++ N+FER KEE+EA++HS++SPRHHKETHG SDDIDETTP+
Sbjct: 1  MEEPKTVIKDSSSEGKDAKAPNLFERAKEEIEAIVHSNKSPRHHKETHGRSDDIDETTPS 60

Query: 61 DEVKAPGMFERVKEEIEALVETIHPKKDSSNH 92
          DEVKAPG+F RVKEEIEALV TIHPKKDS NH
Sbjct: 61 DEVKAPGVFGRVKEEIEALVGTIHPKKDSDNH 92

BLAST of Carg13957 vs. ExPASy TrEMBL
Match: A0A0A0KAY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450740 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MEDPKTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPAD 60
          ME+ KT++K SSSE + +S NIFER KEE+EAVIH ++SPRHHKETHG SDDIDETTPAD
Sbjct: 1  MEESKTEIKGSSSEREPKSPNIFERAKEEIEAVIHCNKSPRHHKETHGRSDDIDETTPAD 60

Query: 61 EVKAPGMFERVKEEIEALVETIHPKKDSSNH 92
          EVKAPG+F RVKEE+EALV  IHPKKDS +H
Sbjct: 61 EVKAPGVFGRVKEEVEALVGAIHPKKDSGSH 91

BLAST of Carg13957 vs. TAIR 10
Match: AT1G72690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-18
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 9  KDSSSEEDARSINIFERLKEEVEAVIHSHES-PRHH-KETHGTSDDIDETTPADEVKAPG 68
          ++ S E+  +S N+FER+KEE+EA+ H  +S  RHH KETHGTSDDIDE+TP D VK PG
Sbjct: 4  QNRSEEKTVKSPNVFERVKEEIEAMGHHEKSKSRHHDKETHGTSDDIDESTPIDYVKGPG 63

Query: 69 MFERVKEEIEALVETIHPKKDS 89
           F+R+KEEIEA+   + PK+ S
Sbjct: 64 FFQRLKEEIEAIFNAVTPKRSS 85

BLAST of Carg13957 vs. TAIR 10
Match: AT5G57000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-15
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 5   KTQMKDSSSEEDARSINIFERLKEEVEAVIHSHESPR----HHKETHGTSDDIDETTPAD 64
           K + K    E+  +  N+ ++ +E+++++    + PR    HHKETHG SDDI E TP D
Sbjct: 57  KMEFKSDKPEDGKKKPNMLKKAREDLKSLFLKEKPPRHLHHHHKETHGRSDDISENTPVD 116

Query: 65  EVKAPGMFERVKEEIEALVETIHPKK 87
           EVKAP + ER KEEIEA+++TIH KK
Sbjct: 117 EVKAPNVLERAKEEIEAVIDTIHSKK 142

BLAST of Carg13957 vs. TAIR 10
Match: AT5G57000.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 5   KTQMKDSSSEEDA-RSINIFERLKEEVEAVIHSHESPR----HHKETHGTSDDIDETTPA 64
           K +M+  S + D  +  N+ ++ +E+++++    + PR    HHKETHG SDDI E TP 
Sbjct: 55  KDKMEFKSDKPDGKKKPNMLKKAREDLKSLFLKEKPPRHLHHHHKETHGRSDDISENTPV 114

Query: 65  DEVKAPGMFERVKEEIEALVETIHPKK 87
           DEVKAP + ER KEEIEA+++TIH KK
Sbjct: 115 DEVKAPNVLERAKEEIEAVIDTIHSKK 141

BLAST of Carg13957 vs. TAIR 10
Match: AT1G17490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 57 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 21 NIFERLKEEVEAVIHSHESPRHHKETHGTSDDIDETTPADEVKAPGMFERVKEEIEALVE 80
          N+    KEE E++ H        KETHG S+DIDE T  D+VK PG+  R+ EE+EA+V+
Sbjct: 15 NVIGSRKEEKESMFHG-------KETHGRSEDIDEKTRVDDVKGPGVLGRMMEEMEAIVD 74

Query: 81 TIHPKKDS 89
           + P K S
Sbjct: 75 AVTPNKSS 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6593528.12.9e-41100.00hypothetical protein SDJN03_13004, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023515027.13.6e-3995.60uncharacterized protein LOC111779175 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023515025.18.8e-3894.57uncharacterized protein LOC111779175 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023000452.15.7e-3793.33uncharacterized protein LOC111494718 isoform X2 [Cucurbita maxima][more]
XP_023000451.11.4e-3592.31uncharacterized protein LOC111494718 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KDN62.8e-3793.33uncharacterized protein LOC111494718 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1KFX06.8e-3692.31uncharacterized protein LOC111494718 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1CT175.1e-3176.92uncharacterized protein LOC111014044 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CRC81.9e-3077.17uncharacterized protein LOC111014044 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A0A0KAY91.1e-2874.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450740 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G72690.14.9e-1857.32unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G57000.12.3e-1546.51unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G57000.22.5e-1447.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G17490.14.1e-0945.59unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..67
NoneNo IPR availablePANTHERPTHR35277OS09G0363700 PROTEINcoord: 2..89
NoneNo IPR availablePANTHERPTHR35277:SF12PROTEIN, PUTATIVE-RELATEDcoord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13957-RACarg13957-RAmRNA