Carg13946 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13946
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 4308645 .. 4309213 (+)
RNA-Seq ExpressionCarg13946
SyntenyCarg13946
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAAAGAAATAATCTGATAATCTAAGCTTTGGTCGTCATTAGTTTAGTTCTGATTGTTCGTCGTGAGCCGCTGGGATCTCGAAGATGTTACATGTTAACGGGCGTAGAAAGCTTCTGTTCTCTGAGCAATGGTGGATCTCTGCACCAACACGAGGGAGGCGGGAGCTAAAGCAAGTTGTTGAGGCACTTATCGCTCAGGTAAATGATGATCGCGCTGGTTTATACCTAGTTGATTTCAAAGAAATTACGTCCTCCTTGTTCTTCTGGAATTTACTTATTGAAACCTTATAGGAACGCATGATGAAGAATCAGAGGAAATGCGGAGTAGTGACGTTTTCGTTTATTGATTTTAGTTTCCTTCACTTTTCTGTCACGAGACAGTTTGATTGGTGTTCTAATTCCAATTTTGAGTGAATCGGATGATGAAAATGAACTCTGGATAGTTTCTTAGTGTTTCCGATTATCAATGTAGGCTTATTTTTCTTTGAAATTGATTTTTCCATCAGAGAAGTTTCATCTATTTTCCGGCTATGAAGAACGTGAGCCTATGGAGCCTGTGTACTTGTGA

mRNA sequence

CTAAAAGAAATAATCTGATAATCTAAGCTTTGGTCGTCATTAGTTTAGTTCTGATTGTTCGTCGTGAGCCGCTGGGATCTCGAAGATGTTACATGTTAACGGGCGTAGAAAGCTTCTGTTCTCTGAGCAATGGTGGATCTCTGCACCAACACGAGGGAGGCGGGAGCTAAAGCAAGTTGTTGAGGCACTTATCGCTCAGGCTTATTTTTCTTTGAAATTGATTTTTCCATCAGAGAAGTTTCATCTATTTTCCGGCTATGAAGAACGTGAGCCTATGGAGCCTGTGTACTTGTGA

Coding sequence (CDS)

ATGTTACATGTTAACGGGCGTAGAAAGCTTCTGTTCTCTGAGCAATGGTGGATCTCTGCACCAACACGAGGGAGGCGGGAGCTAAAGCAAGTTGTTGAGGCACTTATCGCTCAGGCTTATTTTTCTTTGAAATTGATTTTTCCATCAGAGAAGTTTCATCTATTTTCCGGCTATGAAGAACGTGAGCCTATGGAGCCTGTGTACTTGTGA

Protein sequence

MLHVNGRRKLLFSEQWWISAPTRGRRELKQVVEALIAQAYFSLKLIFPSEKFHLFSGYEEREPMEPVYL
Homology
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BLAST of Carg13946 vs. NCBI nr
Match: KAG7025883.1 (hypothetical protein SDJN02_12381 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 4.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MLHVNGRRKLLFSEQWWISAPTRGRRELKQVVEALIAQAYFSLKLIFPSEKFHLFSGYEE 60
          MLHVNGRRKLLFSEQWWISAPTRGRRELKQVVEALIAQAYFSLKLIFPSEKFHLFSGYEE
Sbjct: 1  MLHVNGRRKLLFSEQWWISAPTRGRRELKQVVEALIAQAYFSLKLIFPSEKFHLFSGYEE 60

Query: 61 REPMEPVYL 70
          REPMEPVYL
Sbjct: 61 REPMEPVYL 69

The following BLAST results are available for this feature:
BLAST of Carg13946 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025883.14.6e-31100.00hypothetical protein SDJN02_12381 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg13946 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13946 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13946 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13946-RACarg13946-RAmRNA