Carg13898 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13898
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 4617992 .. 4619498 (+)
RNA-Seq ExpressionCarg13898
SyntenyCarg13898
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCATATACCACACAAGATCTTGGAAGTGACCAGGCCAATATTAGAGAATTATGAGAGGTCAGTAATCAAAGCTTTCTCCTGGAAAATATGGTTCTTCCTGTCGGATATCTCTTGTATCTTTCTGCCAACCACACCTAAATTCACTGTCCAAGATTTTTCTGTCTGTTAAGTGCAACAAGAGATGGCCACAACTCATTCTGAATCAAGTAAAATCTTGTCTTCCTCTGTTAATTTTCTTTTCAATTCCGTATTTCTTCATTAATTATGCAACTGTTTCGTCTTTTTAGATTCATGTCTCCTGATGCATTTCTAAGTTTGATGCCTCATATGTGGTCTTCAAATGTATTCAAAAGTCTTGTATTTTTATGATGAAACTATAGTCTTTGTCAACTTCGTGTAGAAAAGGAAATTTACTATAAAGTCAAGGTTGGTTAATTCTGCATTTCTGTTCTACAACTGAATTTGATAATGTTGACGCAATTCATTGTTGCTTTCATTTTTAGATTCACTTTTGTCTCTCCTGTCTCTGTGTACGACGAACAACGTATTAATCCGGGTTAGTTAATTTCGATATTATTAATTCAAGTTAGATTAAGTTTGACATCTGAATATTTGATATTTCCTCTGTTGTATTCTGGTATTTGAGCGTTGGTGGAATAATTCAATCCTGGCAGCTAAAGACTATCTATTTTGAATTTTCATAGTAAACCGTTGTGTTCTAACTAGGTGGCGAACTTTAATACCAATTAAGTTAATAATATTTGATTGATCCCTTGATGATACATTTTACACAGAACAAAGAAGGATGAACTTCATCCACTAGAACCCAATCTCTTGCATGAGAAGATGAACAAAACCCCTAAATTTGCACATTGAATATCATCCAAATGATTGTGCACAGGTTCTTCAATGGCAACAGCCGGACTATGGAGGTCACAGTCTCTGGCTTGGAACAAAGAATGATATGTAAGCTCTTACACTTGACTCTTCTAACTTTTATATGTGCAAAAGATTTTAGAAACAAAGCCATTGATTCTTGTTCTTCTTCTTTTTAACCCTGCGCTCTCCCTGCTTGTTCAAGATTCAGGGAAGTGAGATTGTTGCCGATTCTTCTCTCTCTGCTCAGAAGCCTTTTCAACGTTTTCAATCTGGATGTCACCACTGATTTCATCTCTTCACCGGCGGAACGGCCGCCGGTGCCGGAGGACGATGAAGAGGGCTCGTTTGGAATGTCTATAACCACCATTCCATCTGCCCTTATGTTAGATGATGAAGAAGAAGAGGAAGAGGAAGAAGAAGTTTGAGCTTCTTCCAAACAAACCCCTCTTGAACTTATCTGCATTTGATTCCCCCAAAACAGAATGTTCGTTGGAAAAATAGGAGACTCCATTGAAGACCCAGATTCCAAATCCTCTGCAGAGTTCATCTCCGTGGGGATTGAGGGTTTGGGAGCCACTGGATCTCTGCAGAGAGGGCAAGTGGAATTGGATTTGAACCACATG

mRNA sequence

ATGCAGCATATACCACACAAGATCTTGGAAGTGACCAGGCCAATATTAGAGAATTATGAGAGATTCATGTCTCCTGATGCATTTCTAAGTTTGATGCCTCATATGTGGTCTTCAAATGTTCTTCAATGGCAACAGCCGGACTATGGAGGTCACAGTCTCTGGCTTGGAACAAAGAATGATATATTCAGGGAAGTGAGATTGTTGCCGATTCTTCTCTCTCTGCTCAGAAGCCTTTTCAACGTTTTCAATCTGGATGTCACCACTGATTTCATCTCTTCACCGGCGGAACGGCCGCCGGTGCCGGAGGACGATGAAGAGGGCTCGTTTGGAATGTCTATAACCACCATTCCATCTGCCCTTATAATGTTCGTTGGAAAAATAGGAGACTCCATTGAAGACCCAGATTCCAAATCCTCTGCAGAGTTCATCTCCGTGGGGATTGAGGGTTTGGGAGCCACTGGATCTCTGCAGAGAGGGCAAGTGGAATTGGATTTGAACCACATG

Coding sequence (CDS)

ATGCAGCATATACCACACAAGATCTTGGAAGTGACCAGGCCAATATTAGAGAATTATGAGAGATTCATGTCTCCTGATGCATTTCTAAGTTTGATGCCTCATATGTGGTCTTCAAATGTTCTTCAATGGCAACAGCCGGACTATGGAGGTCACAGTCTCTGGCTTGGAACAAAGAATGATATATTCAGGGAAGTGAGATTGTTGCCGATTCTTCTCTCTCTGCTCAGAAGCCTTTTCAACGTTTTCAATCTGGATGTCACCACTGATTTCATCTCTTCACCGGCGGAACGGCCGCCGGTGCCGGAGGACGATGAAGAGGGCTCGTTTGGAATGTCTATAACCACCATTCCATCTGCCCTTATAATGTTCGTTGGAAAAATAGGAGACTCCATTGAAGACCCAGATTCCAAATCCTCTGCAGAGTTCATCTCCGTGGGGATTGAGGGTTTGGGAGCCACTGGATCTCTGCAGAGAGGGCAAGTGGAATTGGATTTGAACCACATG

Protein sequence

MQHIPHKILEVTRPILENYERFMSPDAFLSLMPHMWSSNVLQWQQPDYGGHSLWLGTKNDIFREVRLLPILLSLLRSLFNVFNLDVTTDFISSPAERPPVPEDDEEGSFGMSITTIPSALIMFVGKIGDSIEDPDSKSSAEFISVGIEGLGATGSLQRGQVELDLNHM
Homology
[Close]
BLAST of Carg13898 vs. NCBI nr
Match: KAG7025930.1 (hypothetical protein SDJN02_12428, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.7 bits (875), Expect = 3.7e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MQHIPHKILEVTRPILENYERFMSPDAFLSLMPHMWSSNVLQWQQPDYGGHSLWLGTKND 60
           MQHIPHKILEVTRPILENYERFMSPDAFLSLMPHMWSSNVLQWQQPDYGGHSLWLGTKND
Sbjct: 1   MQHIPHKILEVTRPILENYERFMSPDAFLSLMPHMWSSNVLQWQQPDYGGHSLWLGTKND 60

Query: 61  IFREVRLLPILLSLLRSLFNVFNLDVTTDFISSPAERPPVPEDDEEGSFGMSITTIPSAL 120
           IFREVRLLPILLSLLRSLFNVFNLDVTTDFISSPAERPPVPEDDEEGSFGMSITTIPSAL
Sbjct: 61  IFREVRLLPILLSLLRSLFNVFNLDVTTDFISSPAERPPVPEDDEEGSFGMSITTIPSAL 120

Query: 121 IMFVGKIGDSIEDPDSKSSAEFISVGIEGLGATGSLQRGQVELDLNHM 169
           IMFVGKIGDSIEDPDSKSSAEFISVGIEGLGATGSLQRGQVELDLNHM
Sbjct: 121 IMFVGKIGDSIEDPDSKSSAEFISVGIEGLGATGSLQRGQVELDLNHM 168

The following BLAST results are available for this feature:
BLAST of Carg13898 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025930.13.7e-90100.00hypothetical protein SDJN02_12428, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg13898 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13898 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13898 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13898-RACarg13898-RAmRNA