Carg13846 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13846
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHeavy metal transport/detoxification superfamily protein
LocationCarg_Chr08: 5035453 .. 5036660 (-)
RNA-Seq ExpressionCarg13846
SyntenyCarg13846
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAAATGGTGTTTTTTTTGTGCTTTTTTCAAGAATCTAAGACATGGGTTTTAGAGCTTGGATTCATTCATGAGGATCCCAGAACAAAAAATCTGAACTTTCTCGACAAATGTGTTAATTCTGATGATTCTGTCTCTGTTTTTTTAATGTTTTTCTTTTTTAAATTTTATATTCTGATTATGTTTTTCTGATGGGTTTTTCTTTTTGTTTAAAGGGTTCTTTTTGTTTCCCCCCTTTTTTAATTGATTTGTGATGTGGACCCTTTTAAGTATAGATCTCAGTTTTTGGTCTGTGATTTCTGGGTTTTGCAGAAGGTCATATTGAAGTTGGATTTACATGATGACAGGGCCAAGCAGAAGGCTTTGAAGACAGTCTCTTCACTTTCAGGTTTTTTTTTTTTTTTTTTTTTTTTGGTTGTTTTCTTGGCTTTGAATTGAAGCTAATTTTGAATTCTCTGTCATTTTGAGTATTTTATTGATAGGATTAAGTTATGGGCATGATTTTATACCATATTAGAAAGTAGGAACCTCTGTCATGGTATAATATTGTCTACTTTAAACAATAAGCTCTCTCGGGTTTGTTTCGGGCTTCTTTAAAAAGCTTTAGGCTAGTAAAGTTCTTCTTTACTTGTAAACTCATGATCATTTCTTAAATTTGTCACTGTGGGACTCTTTCCTAGTAATCCTCCCCTTGAACAAAGTATACTATAGAGCCTCCCTTGAGACTTATGAAGCCCTCGAACAACCTCCCCTTAATCAAGGTTCGACTCCTAAAGTACGCTATATAGCCTCCCCTGAGACTTATGCAGCTCTCGAACTACTTCCCCTTAATCGAGGCTCGACTCCTAAAGTATGCTATAGAGCCTCCCCTTAATCGAGGCTTGACTGCTAAAGTATGCTATAGAGTCTCCCCTGAGATCTATGGAGCCTCGACTCCTAAAGTACGCTATAGAGCCTCCCCTGAGACCTATGAAGCCTTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTAAAGTACGCTATAGAGCCTCCCCTGAGACCTATGAAGCCTTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTAAAGTACACTATAGAGCCTCCCCTGAGACCTATGGAGCTTTCGAACAACCTCCCCTTAATTGA

mRNA sequence

ATGAAGGTCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAAATGAAGGTCATATTGAAGTTGGATTTACATGATGACAGGGCCAAGCAGAAGGCTTTGAAGACAGTCTCTTCACTTTCAGTAATCCTCCCCTTGAACAAAGTATACTATAGAGCCTCCCTTGAGACTTATGAAGCCCTCGAACAACCTCCCCTTAATCAAGGTTCGACTCCTAAATATGCTATAGAGCCTCCCCTTAATCGAGGCTTGACTGCTAAAGTATGCTATAGAGTCTCCCCTGAGATCTATGGAGCCTCGACTCCTAAAGTACGCTATAGAGCCTCCCCTGAGACCTATGAAGCCTTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTAAAGTACGCTATAGAGCCTCCCCTGAGACCTATGAAGCCTTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTAAAGTACACTATAGAGCCTCCCCTGAGACCTATGGAGCTTTCGAACAACCTCCCCTTAATTGA

Coding sequence (CDS)

ATGAAGGTCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAAATGAAGGTCATATTGAAGTTGGATTTACATGATGACAGGGCCAAGCAGAAGGCTTTGAAGACAGTCTCTTCACTTTCAGTAATCCTCCCCTTGAACAAAGTATACTATAGAGCCTCCCTTGAGACTTATGAAGCCCTCGAACAACCTCCCCTTAATCAAGGTTCGACTCCTAAATATGCTATAGAGCCTCCCCTTAATCGAGGCTTGACTGCTAAAGTATGCTATAGAGTCTCCCCTGAGATCTATGGAGCCTCGACTCCTAAAGTACGCTATAGAGCCTCCCCTGAGACCTATGAAGCCTTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTAAAGTACGCTATAGAGCCTCCCCTGAGACCTATGAAGCCTTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTAAAGTACACTATAGAGCCTCCCCTGAGACCTATGGAGCTTTCGAACAACCTCCCCTTAATTGA

Protein sequence

MKVSASSSSSSSSSSSSSSSKMKVILKLDLHDDRAKQKALKTVSSLSVILPLNKVYYRASLETYEALEQPPLNQGSTPKYAIEPPLNRGLTAKVCYRVSPEIYGASTPKVRYRASPETYEAFKQPPLNRGSTPKVRYRASPETYEAFKQPPLNRGSTPKVHYRASPETYGAFEQPPLN
Homology
[Close]
BLAST of Carg13846 vs. NCBI nr
Match: KAG7025982.1 (hypothetical protein SDJN02_12480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 

Query: 1   MKVSASSSSSSSSSSSSSSSKMKVILKLDLHDDRAKQKALKTVSSLSVILPLNKVYYRAS 60
           MKVSASSSSSSSSSSSSSSSKMKVILKLDLHDDRAKQKALKTVSSLSVILPLNKVYYRAS
Sbjct: 1   MKVSASSSSSSSSSSSSSSSKMKVILKLDLHDDRAKQKALKTVSSLSVILPLNKVYYRAS 60

Query: 61  LETYEALEQPPLNQGSTPKYAIEPPLNRGLTAKVCYRVSPEIYGASTPKVRYRASPETYE 120
           LETYEALEQPPLNQGSTPKYAIEPPLNRGLTAKVCYRVSPEIYGASTPKVRYRASPETYE
Sbjct: 61  LETYEALEQPPLNQGSTPKYAIEPPLNRGLTAKVCYRVSPEIYGASTPKVRYRASPETYE 120

Query: 121 AFKQPPLNRGSTPKVRYRASPETYEAFKQPPLNRGSTPKVHYRASPETYGAFEQPPLN 179
           AFKQPPLNRGSTPKVRYRASPETYEAFKQPPLNRGSTPKVHYRASPETYGAFEQPPLN
Sbjct: 121 AFKQPPLNRGSTPKVRYRASPETYEAFKQPPLNRGSTPKVHYRASPETYGAFEQPPLN 178

[Close]
BLAST of Carg13846 vs. NCBI nr
Match: KAG7011464.1 (hypothetical protein SDJN02_26370, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-06
Identity = 40/83 (48.19%), Postives = 46/83 (55.42%), Query Frame = 0 

Query: 51  PLNKVYYRASLETYEALEQPPLNQGSTPKYAIEPPLNRGLTAKVCYRVSPEIYGASTPKV 110
           P NKVY+RAS E YEALEQ PLN+GS    ++E PLN                     KV
Sbjct: 211 PSNKVYHRASPEAYEALEQSPLNRGSARLLSLE-PLN---------------------KV 270

Query: 111 RYRASPETYEAFKQPPLNRGSTP 134
            +R S ETY A +Q P NRGSTP
Sbjct: 271 HHRNSHETYGALEQSPFNRGSTP 271

[Close]
BLAST of Carg13846 vs. ExPASy Swiss-Prot
Match: O03982 (Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX=3702 GN=HIPP39 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.8e-04
Identity = 21/24 (87.50%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 23 KVILKLDLHDDRAKQKALKTVSSL 47
          K++LKLDLHDDRAKQKALKTVS+L
Sbjct: 3  KIVLKLDLHDDRAKQKALKTVSTL 26

[Close]
BLAST of Carg13846 vs. TAIR 10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-05
Identity = 21/24 (87.50%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 23 KVILKLDLHDDRAKQKALKTVSSL 47
          K++LKLDLHDDRAKQKALKTVS+L
Sbjct: 3  KIVLKLDLHDDRAKQKALKTVSTL 26

[Close]
BLAST of Carg13846 vs. TAIR 10
Match: AT1G01490.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-05
Identity = 21/24 (87.50%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 23 KVILKLDLHDDRAKQKALKTVSSL 47
          K++LKLDLHDDRAKQKALKTVS+L
Sbjct: 3  KIVLKLDLHDDRAKQKALKTVSTL 26

The following BLAST results are available for this feature:
BLAST of Carg13846 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025982.11.9e-89100.00hypothetical protein SDJN02_12480, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7011464.12.1e-0648.19hypothetical protein SDJN02_26370, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg13846 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O039825.8e-0487.50Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg13846 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg13846 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G01490.14.1e-0587.50Heavy metal transport/detoxification superfamily protein [more]
AT1G01490.24.1e-0587.50Heavy metal transport/detoxification superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13846-RACarg13846-RAmRNA