Carg13838 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13838
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PLAC8 family protein
Location	Carg_Chr08: 5089834 .. 5092953 (-)
RNA-Seq Expression	Carg13838
Synteny	Carg13838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAACTCCAACTTCATCTTCTTCCTTGACCGCTAAGAAACCTGAACGTGCAAGCTCCGTTGTTGACTGTGAATATCTTTAGATTTCCATATTGATCTTCGAGATTTAGCTTCGAATCCTTTCTGAAGTGGTTCATCCGCAACCTGACCATGGCGTCGCATGCCGATTACCTTGAGAAAATGCAGCTTCGTCAGGATTACAGAAATTTCTGGCATACGGATCTCACGGGCACCATTTCTGCCAATACGCCTTGTATGTATTTGAAATTTCTTGTTCGATTTTGGTTATCTTTTTGGATTAATCGATTGAGAGGGAAGAATGTTGAAAATCTTGTGTTCGTACTTGATTTCTTTTACTCTGTTTCGTTGATGGGATAGGGTAAAAATTACCTGAAATCGATTCATCTTTGATTTTGCTTGCTATGACCTTTTACCTTTCTCTAGCTCTGTTCCTTTCCAAAGGGTTAACAATGGCGGCTATTGGTTTATTTGCTACAGGGTATTCTTTAATTTGTTTATTCTATTAAATATCTTGATGTTGCTTGACCAATCAATTTTCTCCCAAACCATATAAATACGCTGATTATTTCTTTATTTTTTTTCTTCTGTTTTGCAGATTGTTGCTTTTCTATATTCTGGTAAGGTGTTTGTTCTCTGATGAGTTCTTCTCAATCGTAGTTCCGATTTCAGGAGTCGAAAAACTTCGCTATGTTTATGAGCATTTGTGTTCTTAGTTCTTTAATGCAATGTAATATTCTGCAAGTTTCATATGGCTTCAAAAGAATGTAGATGTATGCTTGCTTTATAATGTTCAAAACGGTATTCGCTTTTTATTGCTTTTGAGTTTTCTAGAGTATTTTGGTATGGTTTTTCTTATAATGCTTCTTGATTGTGTGAAAAGTGCCCCATGTGCTTCTTACCTTCTGCGAAAACGAGCTCTTTATGACGATATGTCGAGGTATTTTCGGCGAAGGTTTGTAATTTTACCACAAGATAAAGTGTGTACCATTGCTGAATCCTTTGGTTAATCTATCATAGATACAAATGCTGTGGTGGTTACATGCCTTGTAGTGGCAAATGTGGAGAAGGCCACTGCCCTGAAGCTTGTCTATGCACCGAGGTTCGTTTATCGATCGAGAACCATGGTCCCCTTTGATCCTCTAGCTATCTAAACATCATTTCATTCATTTATTCTCCTATGGGATCTAGTTTGAAGAATTGTGCGTTCTTTTCAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCAACACGTTTCATGTTGCAAGACGAGTTCAATATACAGACAACAGAGTGTGATAACTGCATCATCGTGTCGTCTTCTCTCTCAAACCATTCGTTCATTAAGCTGCTTGTGCCTCAGCCTTTTCTCCCTTTAACAAGTTTGTCTTACTTTGTAGGGCTTTATGTTGTGCCTCTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGAAGAGCTTCAAGAAGCCTCGGATATAGTGACCTGTTTATCTAACCTTGTGTACTGCAGGTATGGGGTTGCATTCAATCTTCTTAACTCATATTGACATTAAAGTTCTCTTTTAAGAATTTTGAACTCGTTTGTTTTGCAGTGTATGTGCGTGCATGCAGGTATGTCCCGATTTTTTAAAAAGCTTAAAAGATGTCTACCTATAATTGGTGTATATGCATTTTCTTTCTTTTCTCATATGGCTAATCTAAATCTCTACTAGGTTCATGAAACATAACTTTCCACATTTTATATTGACTTTCATAACTCATAAACTTGAGCTTATGAAACTTACCATTTTGTTACAAATCACAAACTCACGAGTAAAAGACGCGCTACCCAAACCCAGGTTTCTACATCCTCTTTTCTGTTGAGGATTGTTTGGAGAGGAGTCCCACATCGAGTAATTACATGGTTGGTATGAGGTCTTTTGGAGAAACCAAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACGATATCATACCATTGTGGAGGTTCGTGGTTTCTAACATAGTATTAGAGTCATCCCCTTAACTGAGTTATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAGGGTGTAGTCAAAAGTGATGCAAGTGTCGAACAAAGGGTGTACTTTGTTCTTGGACTCTAAAGAAGGAGTCGAGCCCCGATTAAGGGGAGAATGTTTGAGGGCTCCATAGGCCTTAGGGGAGGCTTTATGGTGTAATTTGTTCGAGGGGAGGATTGTTGGGAGAGGAGTCCCACGTTGGCTAATTAAGGGGTTGATCATGGGGTTATAGGTAAGGAATGCATCTCCATTGGTACGAGGCTTTTCAGGGAAACCCAAAGTAAAGCCGTGAGAGCTTATGCTCAACTTGTATAGTATCATATCATTGTGGAGGTTCGTGGTTTCTAACATTTCCATCATCTAAACGCTCTTACTCTCAAACTTGATAGAACATGGCTCTTAATCAAACTTAGACACCTTTTATTTTCTTGATTATTTTTTTAGAAATTTATTTTCTTGAAATGTATCATGGAGCTAATTATTTGGTTGCTTGTGTGAGATACTTGAATTCTATATGGGAGTATCTGTAATTTCTGTTGCAAAACCATAGTATTACAGTACAATATGAATCAGTGTTATGCTTTTCTGATGATGTTACCATTGAGAAGTGCAGACACAACACAAGATGGAGTTAGACAAAAGGGATGGCAAGTTTGGACCCCAACCAGCCATGGCTGTGCCTCCTACACAGCAGATGTCTCGGATCAATCAACCGATCCCCGGTCCAGTCGGATATCCTCCTCCGATGTATGGACAACCCTTTGGACACCCACCCCCTCCATATGTTCAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCACCACCTCCCCTGGCTCAAGGCTACGCATCCCCTCCCCCAACACAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCGCCTCCTCCCCCAGGTCAAGGCTTCTCATCTCCTCCCCCGACTCAAGGCTACCCACCTCCTCCTCGTGCTGAAGACTATCCGCCACCGGCTTATCCTCTGCATCAGCCACCTGGTCAATAC

mRNA sequence

AAAAAACTCCAACTTCATCTTCTTCCTTGACCGCTAAGAAACCTGAACGTGCAAGCTCCGTTGTTGACTGTGAATATCTTTAGATTTCCATATTGATCTTCGAGATTTAGCTTCGAATCCTTTCTGAAGTGGTTCATCCGCAACCTGACCATGGCGTCGCATGCCGATTACCTTGAGAAAATGCAGCTTCGTCAGGATTACAGAAATTTCTGGCATACGGATCTCACGGGCACCATTTCTGCCAATACGCCTTATTGTTGCTTTTCTATATTCTGAGTATTTTGGTATGGTTTTTCTTATAATGCTTCTTGATTGTGTGAAAAGTGCCCCATGTGCTTCTTACCTTCTGCGAAAACGAGCTCTTTATGACGATATGTCGAGATACAAATGCTGTGGTGGTTACATGCCTTGTAGTGGCAAATGTGGAGAAGGCCACTGCCCTGAAGCTTGTCTATGCACCGAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCAACACGTTTCATGTTGCAAGACGAGTTCAATATACAGACAACAGAGTGTGATAACTGCATCATCGGCTTTATGTTGTGCCTCTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGAAGAGCTTCAAGAAGCCTCGGATATAGTGACCTGTTTATCTAACCTTGTGTACTGCAGTGTATGTGCGTGCATGCAGACACAACACAAGATGGAGTTAGACAAAAGGGATGGCAAGTTTGGACCCCAACCAGCCATGGCTGTGCCTCCTACACAGCAGATGTCTCGGATCAATCAACCGATCCCCGGTCCAGTCGGATATCCTCCTCCGATGTATGGACAACCCTTTGGACACCCACCCCCTCCATATGTTCAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCACCACCTCCCCTGGCTCAAGGCTACGCATCCCCTCCCCCAACACAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCGCCTCCTCCCCCAGGTCAAGGCTTCTCATCTCCTCCCCCGACTCAAGGCTACCCACCTCCTCCTCGTGCTGAAGACTATCCGCCACCGGCTTATCCTCTGCATCAGCCACCTGGTCAATAC

Coding sequence (CDS)

ATGCCGATTACCTTGAGAAAATGCAGCTTCGTCAGGATTACAGAAATTTCTGGCATACGGATCTCACGGGCACCATTTCTGCCAATACGCCTTATTGTTGCTTTTCTATATTCTGAGTATTTTGGTATGGTTTTTCTTATAATGCTTCTTGATTGTGTGAAAAGTGCCCCATGTGCTTCTTACCTTCTGCGAAAACGAGCTCTTTATGACGATATGTCGAGATACAAATGCTGTGGTGGTTACATGCCTTGTAGTGGCAAATGTGGAGAAGGCCACTGCCCTGAAGCTTGTCTATGCACCGAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCAACACGTTTCATGTTGCAAGACGAGTTCAATATACAGACAACAGAGTGTGATAACTGCATCATCGGCTTTATGTTGTGCCTCTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGAAGAGCTTCAAGAAGCCTCGGATATAGTGACCTGTTTATCTAACCTTGTGTACTGCAGTGTATGTGCGTGCATGCAGACACAACACAAGATGGAGTTAGACAAAAGGGATGGCAAGTTTGGACCCCAACCAGCCATGGCTGTGCCTCCTACACAGCAGATGTCTCGGATCAATCAACCGATCCCCGGTCCAGTCGGATATCCTCCTCCGATGTATGGACAACCCTTTGGACACCCACCCCCTCCATATGTTCAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCACCACCTCCCCTGGCTCAAGGCTACGCATCCCCTCCCCCAACACAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCGCCTCCTCCCCCAGGTCAAGGCTTCTCATCTCCTCCCCCGACTCAAGGCTACCCACCTCCTCCTCGTGCTGAAGACTATCCGCCACCGGCTTATCCTCTGCATCAGCCACCTGGTCAATAC

Protein sequence

MPITLRKCSFVRITEISGIRISRAPFLPIRLIVAFLYSEYFGMVFLIMLLDCVKSAPCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSVCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPPPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY

Homology

[Close]

BLAST of Carg13838 vs. NCBI nr
Match: KAG7025990.1 (hypothetical protein SDJN02_12488, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 636.3 bits (1640), Expect = 1.4e-178
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 1   MPITLRKCSFVRITEISGIRISRAPFLPIRLIVAFLYSEYFGMVFLIMLLDCVKSAPCAS 60
           MPITLRKCSFVRITEISGIRISRAPFLPIRLIVAFLYSEYFGMVFLIMLLDCVKSAPCAS
Sbjct: 1   MPITLRKCSFVRITEISGIRISRAPFLPIRLIVAFLYSEYFGMVFLIMLLDCVKSAPCAS 60

Query: 61  YLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFMLQDE 120
           YLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFMLQDE
Sbjct: 61  YLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFMLQDE 120

Query: 121 FNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSVCACM 180
           FNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSVCACM
Sbjct: 121 FNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSVCACM 180

Query: 181 QTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPPPYVQ 240
           QTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPPPYVQ
Sbjct: 181 QTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPPPYVQ 240

Query: 241 GYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQGYPPPP 300
           GYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQGYPPPP
Sbjct: 241 GYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQGYPPPP 300

Query: 301 RAEDYPPPAYPLHQPPGQY 320
           RAEDYPPPAYPLHQPPGQY
Sbjct: 301 RAEDYPPPAYPLHQPPGQY 319

[Close]

BLAST of Carg13838 vs. NCBI nr
Match: KAG6593658.1 (hypothetical protein SDJN03_13134, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 534.3 bits (1375), Expect = 7.4e-148
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP
Sbjct: 163 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 222

Query: 236 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQG 295
           PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQG
Sbjct: 223 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQG 282

Query: 296 YPPPPRAEDYPPPAYPLHQPPGQY 320
           YPPPPRAEDYPPPAYPLHQPPGQY
Sbjct: 283 YPPPPRAEDYPPPAYPLHQPPGQY 306

[Close]

BLAST of Carg13838 vs. NCBI nr
Match: XP_022964021.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 526.6 bits (1355), Expect = 1.5e-145
Identity = 264/273 (96.70%), Postives = 264/273 (96.70%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP
Sbjct: 163 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 222

Query: 236 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPT---------QGYPPPPSAQGYPPPPPGQG 295
           PPYVQGYPPPPSAQGYPPPPLAQGYASPPPT         QGYPPPPSAQGYPPPPPGQG
Sbjct: 223 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPSAQGYPPPPPGQG 282

Query: 296 FSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY 320
           FSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY
Sbjct: 283 FSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY 315

[Close]

BLAST of Carg13838 vs. NCBI nr
Match: XP_023000584.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 518.5 bits (1334), Expect = 4.2e-143
Identity = 257/264 (97.35%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCF NSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFTNSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHK+ELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHP 
Sbjct: 163 VCACMQTQHKVELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPA 222

Query: 236 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQG 295
           PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPS QGYPPPPPGQGFSSPPPTQG
Sbjct: 223 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSTQGYPPPPPGQGFSSPPPTQG 282

Query: 296 YPPPPRAEDYPPPAYPLHQPPGQY 320
           YPPP  AEDYPPPAYPLHQPP QY
Sbjct: 283 YPPPLHAEDYPPPAYPLHQPPSQY 306

[Close]

BLAST of Carg13838 vs. NCBI nr
Match: XP_023513590.1 (leucine-rich repeat extensin-like protein 2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.5 bits (1316), Expect = 5.1e-141
Identity = 259/282 (91.84%), Postives = 261/282 (92.55%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHKMELDKRDGKFGPQ AMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP
Sbjct: 163 VCACMQTQHKMELDKRDGKFGPQQAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 222

Query: 236 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPT-- 295
           PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPP  QG++SPPPT  
Sbjct: 223 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPLAQGYASPPPTQG 282

Query: 296 ----------------QGYPPPPRAEDYPPPAYPLHQPPGQY 320
                           QGYPPPPRAEDYPPPAYPLHQPPGQY
Sbjct: 283 YPPPPSAQGYPPPPPGQGYPPPPRAEDYPPPAYPLHQPPGQY 324

[Close]

BLAST of Carg13838 vs. ExPASy TrEMBL
Match: A0A6J1HHP6 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111464171 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 7.4e-146
Identity = 264/273 (96.70%), Postives = 264/273 (96.70%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP
Sbjct: 163 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 222

Query: 236 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPT---------QGYPPPPSAQGYPPPPPGQG 295
           PPYVQGYPPPPSAQGYPPPPLAQGYASPPPT         QGYPPPPSAQGYPPPPPGQG
Sbjct: 223 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPSAQGYPPPPPGQG 282

Query: 296 FSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY 320
           FSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY
Sbjct: 283 FSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY 315

[Close]

BLAST of Carg13838 vs. ExPASy TrEMBL
Match: A0A6J1KKE2 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494826 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 2.0e-143
Identity = 257/264 (97.35%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCF NSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFTNSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHK+ELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHP 
Sbjct: 163 VCACMQTQHKVELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPA 222

Query: 236 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQG 295
           PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPS QGYPPPPPGQGFSSPPPTQG
Sbjct: 223 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSTQGYPPPPPGQGFSSPPPTQG 282

Query: 296 YPPPPRAEDYPPPAYPLHQPPGQY 320
           YPPP  AEDYPPPAYPLHQPP QY
Sbjct: 283 YPPPLHAEDYPPPAYPLHQPPSQY 306

[Close]

BLAST of Carg13838 vs. ExPASy TrEMBL
Match: A0A0A0KBB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006690 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.5e-95
Identity = 192/233 (82.40%), Postives = 200/233 (85.84%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           +PC SYLLRKRALYDDMSRY CCGGYMPCSGKCGE HCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  SPCVSYLLRKRALYDDMSRYTCCGGYMPCSGKCGEKHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQ+TECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASD++TCLSNLVYCS
Sbjct: 103 MLQDEFNIQSTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDLITCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQ-PAMAVPPTQQMSRINQPIPGPVG--YPPPMYGQPFG 235
           VCACMQTQHK+E+DKRDGKF PQ P MAVP TQQMSRI+QPIP PVG   PPP+YGQPFG
Sbjct: 163 VCACMQTQHKIEMDKRDGKFEPQLPPMAVPLTQQMSRIDQPIPAPVGGYPPPPVYGQPFG 222

Query: 236 HPPPPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPP-PPPG 285
           H PPP VQGYPP P      P  LAQGY  PP  QGYPP     GYP  PPPG
Sbjct: 223 HLPPPVVQGYPPQPRP---TPTHLAQGYPHPPLFQGYPP----SGYPQHPPPG 268

[Close]

BLAST of Carg13838 vs. ExPASy TrEMBL
Match: A0A5D3BTP0 (Survival motor neuron protein-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001280 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.3e-94
Identity = 194/237 (81.86%), Postives = 199/237 (83.97%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           AP ASYLLRKRALYDDMSRY CCGGYMPCSGKCGE  CPE CLCTEVFCCFANSVASTRF
Sbjct: 43  APYASYLLRKRALYDDMSRYTCCGGYMPCSGKCGEKRCPEVCLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCII F LCLSQLACICSIIACLLGSEEL+EASD++TCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIAFTLCLSQLACICSIIACLLGSEELREASDLLTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQ-PAMAVPPTQQMSRINQPIPGPVG--YPPPMYGQPFG 235
           VCACMQTQHK+ELDKRDGKFGPQ P MA P TQQMSRI QPIP  VG   PPP+YGQPFG
Sbjct: 163 VCACMQTQHKLELDKRDGKFGPQPPPMAAPLTQQMSRIVQPIPAAVGGYPPPPVYGQPFG 222

Query: 236 HPPPPYVQGYPPPPSAQGYPPPP---LAQGYASPPPTQGYPPPPSAQGYPP-PPPGQ 286
           H PPP VQGYPP       PPPP   LAQGY  PPP QGYP P    GYPP PPPGQ
Sbjct: 223 HLPPPVVQGYPP-----ALPPPPAPHLAQGYQPPPPFQGYPQP----GYPPHPPPGQ 270

[Close]

BLAST of Carg13838 vs. ExPASy TrEMBL
Match: A0A1S3C791 (survival motor neuron protein-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497697 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.3e-94
Identity = 194/237 (81.86%), Postives = 199/237 (83.97%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           AP ASYLLRKRALYDDMSRY CCGGYMPCSGKCGE  CPE CLCTEVFCCFANSVASTRF
Sbjct: 43  APYASYLLRKRALYDDMSRYTCCGGYMPCSGKCGEKRCPEVCLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCII F LCLSQLACICSIIACLLGSEEL+EASD++TCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIAFTLCLSQLACICSIIACLLGSEELREASDLLTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQ-PAMAVPPTQQMSRINQPIPGPVG--YPPPMYGQPFG 235
           VCACMQTQHK+ELDKRDGKFGPQ P MA P TQQMSRI QPIP  VG   PPP+YGQPFG
Sbjct: 163 VCACMQTQHKLELDKRDGKFGPQPPPMAAPLTQQMSRIVQPIPAAVGGYPPPPVYGQPFG 222

Query: 236 HPPPPYVQGYPPPPSAQGYPPPP---LAQGYASPPPTQGYPPPPSAQGYPP-PPPGQ 286
           H PPP VQGYPP       PPPP   LAQGY  PPP QGYP P    GYPP PPPGQ
Sbjct: 223 HLPPPVVQGYPP-----ALPPPPAPHLAQGYQPPPPFQGYPQP----GYPPHPPPGQ 270

[Close]

BLAST of Carg13838 vs. TAIR 10
Match: AT4G23470.1 (PLAC8 family protein )

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-79
Identity = 155/219 (70.78%), Postives = 174/219 (79.45%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRY CC GYMPCSG+CGE  CP+ CL TEVFCCFANSVASTRF
Sbjct: 41  APCASYLLRKRALYDDMSRYVCCAGYMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRF 100

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           +LQDEF IQTT+CDNCIIGFM+CLSQ+ACI SI+AC++G +EL EAS I+TC S++VYC+
Sbjct: 101 LLQDEFQIQTTKCDNCIIGFMVCLSQVACIFSIVACIVGMDELSEASQILTCCSDMVYCT 160

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHKME+DKRDGKFGPQP MAVPP QQMSR +Q  P  VGYPP     P G+P 
Sbjct: 161 VCACMQTQHKMEMDKRDGKFGPQP-MAVPPAQQMSRFDQATPPAVGYPPQQGYPPSGYPQ 220

Query: 236 PPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPS 275
            P  QGYPP     GYP  P    Y+  PP   YPPPP+
Sbjct: 221 HP-PQGYPP----SGYPQNPPPSAYSQYPP-GAYPPPPA 252

[Close]

BLAST of Carg13838 vs. TAIR 10
Match: AT4G23470.3 (PLAC8 family protein )

HSP 1 Score: 288.9 bits (738), Expect = 5.0e-78
Identity = 147/200 (73.50%), Postives = 164/200 (82.00%), Query Frame = 0


Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRY CC GYMPCSG+CGE  CP+ CL TEVFCCFANSVASTRF
Sbjct: 41  APCASYLLRKRALYDDMSRYVCCAGYMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRF 100

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           +LQDEF IQTT+CDNCIIGFM+CLSQ+ACI SI+AC++G +EL EAS I+TC S++VYC+
Sbjct: 101 LLQDEFQIQTTKCDNCIIGFMVCLSQVACIFSIVACIVGMDELSEASQILTCCSDMVYCT 160

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPP 235
           VCACMQTQHKME+DKRDGKFGPQP MAVPP QQMSR +Q  P  VGYPP       G+PP
Sbjct: 161 VCACMQTQHKMEMDKRDGKFGPQP-MAVPPAQQMSRFDQATPPAVGYPPQQ-----GYPP 220

Query: 236 PPYVQGYPPPPSAQGYPPPP 256
             Y Q YPP      YPPPP
Sbjct: 221 SAYSQ-YPP----GAYPPPP 229

[Close]

BLAST of Carg13838 vs. TAIR 10
Match: AT1G63830.2 (PLAC8 family protein )

HSP 1 Score: 275.8 bits (704), Expect = 4.4e-74
Identity = 137/202 (67.82%), Postives = 160/202 (79.21%), Query Frame = 0


Query: 57  PCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFM 116
           PC SY+LR+RALY+DMSRY CC GYMPCSG+CGE  CP+ CL TEVF CF NSVASTRF+
Sbjct: 44  PCVSYMLRRRALYNDMSRYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFL 103

Query: 117 LQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSV 176
           LQDEFNIQTT+CDNCIIGFM CLSQ+ACI SI+AC++GS+EL EAS I++C +++VYC+V
Sbjct: 104 LQDEFNIQTTQCDNCIIGFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTV 163

Query: 177 CACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPP 236
           CACMQTQHK+E+DKRDG FG QP M VPP QQMSR +QP+P PVGYP         +PPP
Sbjct: 164 CACMQTQHKLEMDKRDGVFGSQP-MGVPPAQQMSRFDQPVPPPVGYPQ-------SYPPP 223

Query: 237 PYVQGYPPPPSAQGYPPPPLAQ 259
              QGYPP      YPPP   Q
Sbjct: 224 --AQGYPP----ASYPPPGYPQ 231

[Close]

BLAST of Carg13838 vs. TAIR 10
Match: AT1G63830.1 (PLAC8 family protein )

HSP 1 Score: 275.8 bits (704), Expect = 4.4e-74
Identity = 137/202 (67.82%), Postives = 160/202 (79.21%), Query Frame = 0


Query: 57  PCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFM 116
           PC SY+LR+RALY+DMSRY CC GYMPCSG+CGE  CP+ CL TEVF CF NSVASTRF+
Sbjct: 44  PCVSYMLRRRALYNDMSRYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFL 103

Query: 117 LQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSV 176
           LQDEFNIQTT+CDNCIIGFM CLSQ+ACI SI+AC++GS+EL EAS I++C +++VYC+V
Sbjct: 104 LQDEFNIQTTQCDNCIIGFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTV 163

Query: 177 CACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPP 236
           CACMQTQHK+E+DKRDG FG QP M VPP QQMSR +QP+P PVGYP         +PPP
Sbjct: 164 CACMQTQHKLEMDKRDGVFGSQP-MGVPPAQQMSRFDQPVPPPVGYPQ-------SYPPP 223

Query: 237 PYVQGYPPPPSAQGYPPPPLAQ 259
              QGYPP      YPPP   Q
Sbjct: 224 --AQGYPP----ASYPPPGYPQ 231

[Close]

BLAST of Carg13838 vs. TAIR 10
Match: AT1G63830.3 (PLAC8 family protein )

HSP 1 Score: 275.8 bits (704), Expect = 4.4e-74
Identity = 137/202 (67.82%), Postives = 160/202 (79.21%), Query Frame = 0


Query: 57  PCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFM 116
           PC SY+LR+RALY+DMSRY CC GYMPCSG+CGE  CP+ CL TEVF CF NSVASTRF+
Sbjct: 44  PCVSYMLRRRALYNDMSRYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFL 103

Query: 117 LQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSV 176
           LQDEFNIQTT+CDNCIIGFM CLSQ+ACI SI+AC++GS+EL EAS I++C +++VYC+V
Sbjct: 104 LQDEFNIQTTQCDNCIIGFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTV 163

Query: 177 CACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPP 236
           CACMQTQHK+E+DKRDG FG QP M VPP QQMSR +QP+P PVGYP         +PPP
Sbjct: 164 CACMQTQHKLEMDKRDGVFGSQP-MGVPPAQQMSRFDQPVPPPVGYPQ-------SYPPP 223

Query: 237 PYVQGYPPPPSAQGYPPPPLAQ 259
              QGYPP      YPPP   Q
Sbjct: 224 --AQGYPP----ASYPPPGYPQ 231

The following BLAST results are available for this feature:

BLAST of Carg13838 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025990.1	1.4e-178	100.00	hypothetical protein SDJN02_12488, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593658.1	7.4e-148	100.00	hypothetical protein SDJN03_13134, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022964021.1	1.5e-145	96.70	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]
XP_023000584.1	4.2e-143	97.35	leucine-rich repeat extensin-like protein 2 [Cucurbita maxima]	[more]
XP_023513590.1	5.1e-141	91.84	leucine-rich repeat extensin-like protein 2 isoform X3 [Cucurbita pepo subsp. pe...	[more]

BLAST of Carg13838 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHP6	7.4e-146	96.70	leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KKE2	2.0e-143	97.35	leucine-rich repeat extensin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0KBB6	3.5e-95	82.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006690 PE=4 SV=1	[more]
A0A5D3BTP0	2.3e-94	81.86	Survival motor neuron protein-like isoform X4 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C791	2.3e-94	81.86	survival motor neuron protein-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Carg13838 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23470.1	1.2e-79	70.78	PLAC8 family protein	[more]
AT4G23470.3	5.0e-78	73.50	PLAC8 family protein	[more]
AT1G63830.2	4.4e-74	67.82	PLAC8 family protein	[more]
AT1G63830.1	4.4e-74	67.82	PLAC8 family protein	[more]
AT1G63830.3	4.4e-74	67.82	PLAC8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..319
None	No IPR available	PANTHER	PTHR31152	PLAC8 FAMILY PROTEIN	coord: 54..272
None	No IPR available	PANTHER	PTHR31152:SF8	SUBFAMILY NOT NAMED	coord: 54..272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13838-RA	Carg13838-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane